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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
LNG01_0056_E06
Library: LNG01 (Lung)
Individual: LWD3, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,142)
[FASTA format sequence]
CCCGTCCCGG CTCCTCCCGC TTGCCGCCGC AGTGACAGGG AAGCCGGGCC CGGTGGCAGA
GAGGAAGTGC GGGGCCGCCG CGCCGAGCCC GTCCCCGCCG AGGCCGGCTC CCCCAGGCGG
CTCGGGTGAC AGTGTCGCGG CCGCCGGGCG CAGCGCGGGG CACGCGCCGG GCAGAGCCAA
GGGCCAGGCG GACGCTTCAG CAGAGACGCG GGGAAAATGG CTGATGACTT TGGCTTCTTC
TCGTCATCGG AGAGCGGGGC CCCTGAGGTT GCCGAGGAGG ACCCGGCGGC TGCCTTCCTG
GCCCAGCAGG AGAGTGAAAT CGCGGGCATA GAGAATGACG AGGGCTTCGG GGCACCTGCC
GGCAGCCAGG CGGCCCTCGC GCAGCCGGGA CCAGCGAGTG GGGGTCCTGA GGACATGGGG
ACCACAGTCA ATGGAGATGT GTTTCAGGAT GCTAACGGTC CAGCTGATGG CTACGCTGCC
ATTGCCCAGG CGGACAGACT GACTCAGGAA CCCGAGAGCA TCCGCAAGTG GAGAGAGGAG
CAGCGGAAAC GGCTGCAAGA GCTGGATGCT GCCTCCAAAG TGACGGAACA AGAGTGGCGG
GAGAAGGCCA AGAAGGACTT GGAGGAATGG GACCAGCGCC AGAGTGAGCA AGTTGAGAAG
AACAAGATCA ATAACCGGGC ATCCGAGGAG GCTTTTGTGA AGGAATCCAA GGAGGAGACC
CCAGGTACAG AGTGGGAGAA GGTGGCCCAG CTGTGTGACT TCAACCCCAA GAGCAGCAAG
CAATGCAAAG ACGTGTCCCG CCTGCGCTCG GTGCTCATGT CCCTGAAGCA GACACCACTG
TCCCGCTAGG AGCCTGTCAC CAGCATGGCC GCCAAGCGGG GGCAGGGCCG GGCAGAGTAG
GAGCAGCTGC TTCGGCCAGG GTGGGGAAAA CGCCTCCTGT GGCTGCTACA CAGCCTATCC
CGTTCCTCCC CATCTCCCAG GGCTGGGAAG AGGGACGTTC ACCCCTCTCG CCCATCACTC
CCTCACAGCC CTATGGCCCA GCCCCTCACA TGTCCTCTCA GTCCACAAAA TTGACTGTCC
CTCCTGATGT ATTTTTTTTT TTCTTGGCTT AAAGGGTGTG TTGTTAAAAA AAAAAAAAAA
AA
Deduced amino acid sequence: (length: 210) [FASTA format sequence]
MADDFGFFSS SESGAPEVAE EDPAAAFLAQ QESEIAGIEN DEGFGAPAGS QAALAQPGPA
SGGPEDMGTT VNGDVFQDAN GPADGYAAIA QADRLTQEPE SIRKWREEQR KRLQELDAAS
KVTEQEWREK AKKDLEEWDQ RQSEQVEKNK INNRASEEAF VKESKEETPG TEWEKVAQLC
DFNPKSSKQC KDVSRLRSVL MSLKQTPLSR
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | CLTB | clathrin light chain B isoform a [Homo sapiens]. | 352 | 3e-97 | O |
|
| CLTA | clathrin light chain A isoform a [Homo sapiens]. | 236 | 2e-62 | O |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Cltb | clathrin light chain B [Mus musculus]. | 343 | 2e-94 | O |
|
| Clta | clathrin light chain A isoform a [Mus musculus]. | 235 | 4e-62 | O |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC489104 | PREDICTED: similar to clathrin, light polypeptide isoform a isoform 5 [Canis familiaris]. | 355 | 6e-98 | O |
|
| LOC474765 | PREDICTED: similar to clathrin, light polypeptide A isoform a isoform 7 [Canis familiaris]. | 192 | 7e-49 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CLTB | clathrin light chain B [Bos taurus]. | 353 | 1e-97 | O |
|
| CLTA | clathrin light chain A [Bos taurus]. | 218 | 8e-57 | O |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC100525860 | PREDICTED: clathrin light chain B-like isoform 2 [Sus scrofa]. | 363 | e-100 | |
|
| CLTA | PREDICTED: clathrin light chain A isoform 1 [Sus scrofa]. | 237 | 8e-63 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07290 | 4.1 | AGTTGAGAAGAACAAGATCAATAACCGGGCATCCGAGGAGGCTTTTGTGAAGGAATCCAA |
Assembly member: TOP