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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  LNG01_0065_F02

Library: LNG01 (Lung)
Individual: LWD3, Crossbred pig ((Landrace x Large White) x Duroc, Western)

Nucleotide sequence:   (length: 1,115)  [FASTA format sequence]
ACAGAATGAC AGAGGTGGCA GGCAGGTCCA GCAGCCCATC TACTCTTGGT ACAAAGTCTA
GGGGAAGATA ATCACAGCAC TGTGGCGGGG GAAGTGGGGG GAGAGAAGGG CGTGGACGGC
TTCCCTTTGT TCAGCTGGGC CACTGCCCAC TTGGCAGATA GGACCTGTGG GAGCTCCCCC
CCCACCCCGT TCCACCCTCA TAAAAGAACC CCAGAGCCCT GCCCTGGGCC ATTGTTGAGG
CCACAGCAGC ATC
ATGGCAG ACCGCTCCGG GCACCTGGCA GCCCTGATCC TCCTCGGAGC
AGCTGTATGT GTGGCACAGC CCCGTGGCCG GATCCTGGGT GGCCAGGAGG CCAAGTCCCA
CGAGAGACCC TACATGGCAT CGGTGCAGGT GAACGGCAAG CACGTGTGCG GAGGCTTCCT
GGTGTCTGAG CAGTGGGTGC TGAGTGCAGC ACACTGCCTG GAGGACGTGG CCGAGGGGAA
GCTGCAGGTT CTCCTGGGTG CGCACTCCCT GTCACAGCCC GAGCCCTCGA AGCGCCTGTA
CGACGTGCTC CGCGCCGTGC CCCACCCAGA CAGCCAGCCT GACACCATCG ACCATGATCT
CCTCCTGCTG AAGCTCTCCG AGAAGGCCGA GCTGGGCCCT GCCGTGCAGC CCCTTGCCTG
GCAACGAGAG GACCACGAGG TTCCGGCAGG CACGCTCTGC GACGTGGCCG GCTGGGGAGT
GGTCAGTCAC ACTGGCCGCC GGCCCGACCG TCTGCAGCAC CTGCTCCTAC CGGTGCTGGA
CCGCACCACC TGCAACCTGC GCACATACCA CGATGGCACC ATCACCGAGC GCATGATGTG
CGCGGAGAGC AACCGTCGGG ACAGCTGCAA GGGCGACTCC GGAGGCCCGC TGGTGTGCGG
GGGTGTGGCC GAGGGAGTGG TTACCTCAGG CTCCCGAGTC TGCGGCAACC GCAAGAAACC
CGGCATCTAC ACGCGCTTGG CGAGCTACGT GGCCTGGATC GACGGAGTGA TGGCTGACAG
CGCAGCCGCC TAAGGAGGAC CTAAGGGACA GGGCGGTGGT CACCAGGCTT AGCAATAAAG
TCATCCATTC CTGCAAAAAA AAAAAAAAAA AAAAA

Deduced amino acid sequence:  (length: 259) [FASTA format sequence]
MADRSGHLAA LILLGAAVCV AQPRGRILGG QEAKSHERPY MASVQVNGKH VCGGFLVSEQ
WVLSAAHCLE DVAEGKLQVL LGAHSLSQPE PSKRLYDVLR AVPHPDSQPD TIDHDLLLLK
LSEKAELGPA VQPLAWQRED HEVPAGTLCD VAGWGVVSHT GRRPDRLQHL LLPVLDRTTC
NLRTYHDGTI TERMMCAESN RRDSCKGDSG GPLVCGGVAE GVVTSGSRVC GNRKKPGIYT
RLASYVAWID GVMADSAAA


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCFDcomplement factor D preproprotein [Homo sapiens]. 404e-112O
Contig/Assembly ProteinGZMMgranzyme M precursor [Homo sapiens]. 1664e-41
Contig/Assembly ProteinPRSS57serine protease 57 precursor [Homo sapiens]. 1665e-41
Contig/Assembly ProteinGZMKgranzyme K precursor [Homo sapiens]. 1658e-41
Contig/Assembly ProteinKLK8kallikrein-8 isoform 1 preproprotein [Homo sapiens]. 1457e-35


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCfdcomplement factor D precursor [Mus musculus]. 3293e-90O
Contig/Assembly ProteinPrss57serine protease 57 precursor [Mus musculus]. 1824e-46
Contig/Assembly ProteinGzmkgranzyme K precursor [Mus musculus]. 1655e-41
Contig/Assembly ProteinGzmmgranzyme M [Mus musculus]. 1595e-39
Contig/Assembly ProteinKlk6kallikrein related-peptidase 6 precursor [Mus musculus]. 1493e-36


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC485095PREDICTED: similar to Complement factor D precursor (C3 convertase activator) (Properdin factor D) (Adipsin) [Canis familiaris]. 387e-107O
Contig/Assembly ProteinLOC489200PREDICTED: similar to Granzyme K precursor (Granzyme-3) (NK-tryptase-2) (NK-TRYP-2) [Canis familiaris]. 1627e-40
Contig/Assembly ProteinLOC485099PREDICTED: similar to protease, serine-like 1 [Canis familiaris]. 1611e-39
Contig/Assembly ProteinKLK8kallikrein-8 isoform a [Canis lupus familiaris]. 1563e-38
Contig/Assembly ProteinLOC611100PREDICTED: similar to chymotrypsin-like [Canis familiaris]. 1411e-33


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCFDcomplement factor D precursor [Bos taurus]. 428e-120O
Contig/Assembly ProteinLOC100337227PREDICTED: complement factor D-like [Bos taurus]. 2093e-54
Contig/Assembly ProteinPRSSL1PREDICTED: granzyme M-like [Bos taurus]. 1687e-42
Contig/Assembly ProteinLOC786126PREDICTED: duodenase-1-like [Bos taurus]. 1541e-37


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC396877PREDICTED: complement factor D [Sus scrofa]. 482e-136
Contig/Assembly ProteinGZMKgranzyme K [Sus scrofa]. 1793e-45
Contig/Assembly ProteinGZMMgranzyme M [Sus scrofa]. 1592e-39
Contig/Assembly ProteinLOC100620458PREDICTED: granzyme A-like [Sus scrofa]. 1493e-36
Contig/Assembly ProteinLOC100621609PREDICTED: chymotrypsin-like protease CTRL-1-like [Sus scrofa]. 1386e-33


Oligo-microarray probe:      TOP


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003053120030531C-00307321fwd
2003082620030826C-00018370fwd
2004020420040204C-00384167fwd
2005032220050322C-000302104fwd
2006061120060611C-005548107fwd
2007080620070806C-006951109fwd
2008051520080515C-000814110fwd
2010100120101001C-0064822fwd
2011060120110601C-0122712fwd