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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
LNG01_0065_F02
Library: LNG01 (Lung)
Individual: LWD3, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,115)
[FASTA format sequence]
ACAGAATGAC AGAGGTGGCA GGCAGGTCCA GCAGCCCATC TACTCTTGGT ACAAAGTCTA
GGGGAAGATA ATCACAGCAC TGTGGCGGGG GAAGTGGGGG GAGAGAAGGG CGTGGACGGC
TTCCCTTTGT TCAGCTGGGC CACTGCCCAC TTGGCAGATA GGACCTGTGG GAGCTCCCCC
CCCACCCCGT TCCACCCTCA TAAAAGAACC CCAGAGCCCT GCCCTGGGCC ATTGTTGAGG
CCACAGCAGC ATCATGGCAG ACCGCTCCGG GCACCTGGCA GCCCTGATCC TCCTCGGAGC
AGCTGTATGT GTGGCACAGC CCCGTGGCCG GATCCTGGGT GGCCAGGAGG CCAAGTCCCA
CGAGAGACCC TACATGGCAT CGGTGCAGGT GAACGGCAAG CACGTGTGCG GAGGCTTCCT
GGTGTCTGAG CAGTGGGTGC TGAGTGCAGC ACACTGCCTG GAGGACGTGG CCGAGGGGAA
GCTGCAGGTT CTCCTGGGTG CGCACTCCCT GTCACAGCCC GAGCCCTCGA AGCGCCTGTA
CGACGTGCTC CGCGCCGTGC CCCACCCAGA CAGCCAGCCT GACACCATCG ACCATGATCT
CCTCCTGCTG AAGCTCTCCG AGAAGGCCGA GCTGGGCCCT GCCGTGCAGC CCCTTGCCTG
GCAACGAGAG GACCACGAGG TTCCGGCAGG CACGCTCTGC GACGTGGCCG GCTGGGGAGT
GGTCAGTCAC ACTGGCCGCC GGCCCGACCG TCTGCAGCAC CTGCTCCTAC CGGTGCTGGA
CCGCACCACC TGCAACCTGC GCACATACCA CGATGGCACC ATCACCGAGC GCATGATGTG
CGCGGAGAGC AACCGTCGGG ACAGCTGCAA GGGCGACTCC GGAGGCCCGC TGGTGTGCGG
GGGTGTGGCC GAGGGAGTGG TTACCTCAGG CTCCCGAGTC TGCGGCAACC GCAAGAAACC
CGGCATCTAC ACGCGCTTGG CGAGCTACGT GGCCTGGATC GACGGAGTGA TGGCTGACAG
CGCAGCCGCC TAAGGAGGAC CTAAGGGACA GGGCGGTGGT CACCAGGCTT AGCAATAAAG
TCATCCATTC CTGCAAAAAA AAAAAAAAAA AAAAA
Deduced amino acid sequence: (length: 259) [FASTA format sequence]
MADRSGHLAA LILLGAAVCV AQPRGRILGG QEAKSHERPY MASVQVNGKH VCGGFLVSEQ
WVLSAAHCLE DVAEGKLQVL LGAHSLSQPE PSKRLYDVLR AVPHPDSQPD TIDHDLLLLK
LSEKAELGPA VQPLAWQRED HEVPAGTLCD VAGWGVVSHT GRRPDRLQHL LLPVLDRTTC
NLRTYHDGTI TERMMCAESN RRDSCKGDSG GPLVCGGVAE GVVTSGSRVC GNRKKPGIYT
RLASYVAWID GVMADSAAA
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
BLAST on RefSeq (Human): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| CFD | complement factor D preproprotein [Homo sapiens]. | 404 | e-112 | O |
|
| GZMM | granzyme M precursor [Homo sapiens]. | 166 | 4e-41 | |
|
| PRSS57 | serine protease 57 precursor [Homo sapiens]. | 166 | 5e-41 | |
|
| GZMK | granzyme K precursor [Homo sapiens]. | 165 | 8e-41 | |
|
| KLK8 | kallikrein-8 isoform 1 preproprotein [Homo sapiens]. | 145 | 7e-35 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| Cfd | complement factor D precursor [Mus musculus]. | 329 | 3e-90 | O |
|
| Prss57 | serine protease 57 precursor [Mus musculus]. | 182 | 4e-46 | |
|
| Gzmk | granzyme K precursor [Mus musculus]. | 165 | 5e-41 | |
|
| Gzmm | granzyme M [Mus musculus]. | 159 | 5e-39 | |
|
| Klk6 | kallikrein related-peptidase 6 precursor [Mus musculus]. | 149 | 3e-36 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LOC485095 | PREDICTED: similar to Complement factor D precursor (C3 convertase activator) (Properdin factor D) (Adipsin) [Canis familiaris]. | 387 | e-107 | O |
|
| LOC489200 | PREDICTED: similar to Granzyme K precursor (Granzyme-3) (NK-tryptase-2) (NK-TRYP-2) [Canis familiaris]. | 162 | 7e-40 | |
|
| LOC485099 | PREDICTED: similar to protease, serine-like 1 [Canis familiaris]. | 161 | 1e-39 | |
|
| KLK8 | kallikrein-8 isoform a [Canis lupus familiaris]. | 156 | 3e-38 | |
|
| LOC611100 | PREDICTED: similar to chymotrypsin-like [Canis familiaris]. | 141 | 1e-33 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| CFD | complement factor D precursor [Bos taurus]. | 428 | e-120 | O |
|
| LOC100337227 | PREDICTED: complement factor D-like [Bos taurus]. | 209 | 3e-54 | |
|
| PRSSL1 | PREDICTED: granzyme M-like [Bos taurus]. | 168 | 7e-42 | |
|
| LOC786126 | PREDICTED: duodenase-1-like [Bos taurus]. | 154 | 1e-37 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LOC396877 | PREDICTED: complement factor D [Sus scrofa]. | 482 | e-136 | |
|
| GZMK | granzyme K [Sus scrofa]. | 179 | 3e-45 | |
|
| GZMM | granzyme M [Sus scrofa]. | 159 | 2e-39 | |
|
| LOC100620458 | PREDICTED: granzyme A-like [Sus scrofa]. | 149 | 3e-36 | |
|
| LOC100621609 | PREDICTED: chymotrypsin-like protease CTRL-1-like [Sus scrofa]. | 138 | 6e-33 | |
Oligo-microarray probe: TOP
Assembly member: TOP