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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
LVR01_0026_B11
Library: LVR01 (Liver)
Individual: LWD4, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,171)
[FASTA format sequence]
GTGTTCGTGT AGGGGAGGCT GGAAGCCGCA GGAGCGGGAG ACGGTGGAGG GGATTTTGAG
AAGAAAACTG CGGTAGCGAC CTCACTCGGT GGTACAAGAG GGGAACGCTA GTCCCTCCGA
AAGCCGGGTT ACTGCGAACG CACCAGCTGA GCCCTTAGTA CTGCAACCCC CACCCTCCTT
TGGTTTGTGG AGGAGCCTGA CCACTCTGCC TCTTATGGCC ACAATGCTGA CCGCCCGCCT
CTCCAGACCC CTGTCGCAGC TCCCAAGGAA AACCCTGAAT TTCTCTGAGA GAGAAAATGG
AGCAAGAGGC TCGCTGCTGT TTTACTCTCC CTCCTTTGTC CCTGGCAGCC GTCGGACTTA
TGCTGATTCG GTGAACCCGG TTGGCAGCAA AGCTGTCCTG GTCACAGGCT GTGACTCTGG
ATTTGGGTTC TCACTGGCCA AGCATCTGCA TTCAAAAGGC TTCCTTGTAT TTGCTGGCTG
CTTGATGAAG GACAAAGGGC ATGACGGGGT CAAGGAACTG GACAGCTTGA AGAGTGATCG
ATTAAGAACC GTCCAGCTCA ATGTCTGCAA AAGTGAAGAA GTAGAGAAAG TGGTGGAGAC
CATCCGCTCG AGCTTGCAGG ACCCTGAGAA AGGCTTGTGG GGCCTGGTTA ACAATGCAGG
CATCTCAACG TTCGGGGACG TGGAATTCAC CAGCATGGAG ACCTACAAGG AGGTGGCAGA
AGTGAACCTC TGGGGCACGG TGCGGGTGAC AAAATCCTTT CTCCCTCTCA TCCGGAGGGC
CAAAGATTTC CAAGAAACAA CAACCTCAAA ATGTCCAAGT CATCAAGGAC CCCATCTGGA
CGGGAAAGCT TGGTACTGCT CGCTGTTTTA CTACCAAGTT CCCTTGTCAC CTGGGCAAGT
CCCTTCTCCA TTTCCCACCT CACTCTCCTC ATTTAAAAAT AGCAGTAATG ACAACAATCA
TAACCATTCC TAACACGCTG TGACCCAGGC AGAACATGCT CTAAACCCAC TGCATGCTTA
ATTCTTACAA CCCTATTAAG GAGACAGCAG TATTCTTATT CCGGAAGAAC CCAAGACACA
CAGGTTTTTC ATTTGCCCAA GGTCACCCAC AACAAAGTCA AAATGAGAGA ACTTGAAAGA
CGACCTCAAA AAAAAAAAAA AAAAAAAAAA A
Deduced amino acid sequence: (length: 252) [FASTA format sequence]
MATMLTARLS RPLSQLPRKT LNFSERENGA RGSLLFYSPS FVPGSRRTYA DSVNPVGSKA
VLVTGCDSGF GFSLAKHLHS KGFLVFAGCL MKDKGHDGVK ELDSLKSDRL RTVQLNVCKS
EEVEKVVETI RSSLQDPEKG LWGLVNNAGI STFGDVEFTS METYKEVAEV NLWGTVRVTK
SFLPLIRRAK DFQETTTSKC PSHQGPHLDG KAWYCSLFYY QVPLSPGQVP SPFPTSLSSF
KNSSNDNNHN HS
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | BDH1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo sapiens]. | 287 | 1e-77 | |
|
| HSD17B2 | estradiol 17-beta-dehydrogenase 2 [Homo sapiens]. | 98.6 | 1e-20 | |
|
| HSD17B6 | 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Homo sapiens]. | 90.1 | 4e-18 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Bdh1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Mus musculus]. | 278 | 6e-75 | |
|
| Hsd17b2 | estradiol 17-beta-dehydrogenase 2 [Mus musculus]. | 108 | 8e-24 | |
|
| Rdh7 | retinol dehydrogenase 7 [Mus musculus]. | 94 | 2e-19 | |
|
| Dhrs9 | dehydrogenase/reductase SDR family member 9 precursor [Mus musculus]. | 90.1 | 3e-18 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC488037 | PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor [Canis familiaris]. | 226 | 4e-59 | |
|
| LOC489690 | PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis familiaris]. | 99.8 | 5e-21 | |
|
| LOC481118 | PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis familiaris]. | 90.1 | 4e-18 | |
|
| HSD11B2 | PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris]. | 75.5 | 9e-14 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| BDH1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Bos taurus]. | 308 | 6e-84 | |
|
| HSD17B2 | estradiol 17-beta-dehydrogenase 2 [Bos taurus]. | 105 | 1e-22 | |
|
| HSD17B6 | 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus]. | 100 | 3e-21 | |
|
| HSD11B2 | corticosteroid 11-beta-dehydrogenase isozyme 2 [Bos taurus]. | 94 | 2e-19 | |
|
| RDH16 | retinol dehydrogenase 16 [Bos taurus]. | 91.7 | 1e-18 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC100511473 | PREDICTED: d-beta-hydroxybutyrate dehydrogenase, mitochondrial-like [Sus scrofa]. | 239 | 2e-63 | |
|
| BDH1 | PREDICTED: d-beta-hydroxybutyrate dehydrogenase, mitochondrial [Sus scrofa]. | 173 | 2e-43 | |
|
| HSD17B2 | estradiol 17-beta-dehydrogenase 2 [Sus scrofa]. | 97.4 | 1e-20 | |
|
| HSD11B2 | corticosteroid 11-beta-dehydrogenase isozyme 2 [Sus scrofa]. | 94 | 1e-19 | |
|
| LOC100512656 | PREDICTED: retinol dehydrogenase 16-like [Sus scrofa]. | 87.4 | 1e-17 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07934 | 4.1 | AATGACAACAATCATAACCATTCCTAACACGCTGTGACCCAGGCAGAACATGCTCTAAAC |
Assembly member: TOP