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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
LVR01_0043_A10
Library: LVR01 (Liver)
Individual: LWD4, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 2,448)
[FASTA format sequence]
TTAAGCCAAG CAGACACGCA ACAGAAGCCA GGATAGGCCA TCCTGCCCCC AGCCCCAGCT
TCTCTCTGTC TTCCACCACC ATGGGGAGCA ATCGCTGCCC CCGACTTGGG CTGGTACCCT
TGATCCTGGG CCTCTTGTCT GGAGGTGTGA GCATGACGCC ATTGCCTGAG GCCAGGCCCC
AAAGCCCCTG CTCTCTGGAG GGGATTGAGA TCAAAGGTGG CACCTTCCAC CTTCTCAAGG
AGGGTCTGGT TCTGGAGTAC GTGTGTCCTT CTGGCTTCTA CCCGTACCCG GTGCAGATTC
GCACCTGCCG ATCCTCGGGA TCCTGGAGCA CCCTGCAGAC CCAAGACAGA AAGATTGTCA
AGAGGGCCGA ATGCAAAGCA ATCCGCTGCC CCAGACCGCA GGACTTCGAG AATGGGGAGT
ATTGGCCCCG GGCCGCCTAC TACAACTTAA GTGACGAGAT CTCCTTCCAC TGCTATGACG
GTTACACTCT CCGGGGCTCT GCCAATCGCA CCTGCCAAGT GACTGGTCGG TGGGATGGGC
AAACGGCCAT CTGCGATGAT GGAGCGGGGT ACTGCCCGAA CCCAGGCATC CCCATTGGCA
CGAGGAAGGT GGGCACCCAG TACCGCCTTG AAGACAGTGT CACCTACTAC TGCAGCCGAG
GGCTCACCCT ACGTGGCTCC CAGCGGCGAA CGTGCCAGGA AGGTGGCTCT TGGAGTGGAA
CAGAGCCTTC CTGCCAAGAC TCCTTTATGT ACGACACCCC TGCAGAGGTG GCCGGGGCCT
TCCTGTCTTC CCTGACAGAG ACCATAGAAG GCGTTGATGC CGAGGATGGG CACATCCCAG
GGGACCAACA GAAGAGGAAG ATTGTCTTGG ACCCCTCGGG CCCCATGAAT ATCTACCTGG
TGCTGGATGG ATCAGACAGC ATTGGGGCAC GCAACTTCAC AGGGGCCAAG AATTGCCTCA
AAGACTTCAT TGAAAAGGTG GCAAGCTATG GGGTGAAGCC GAAATATGGT CTAGTGACAT
ATGCCACAGA CCCCAAAGTT TTGATCAGAG TGTCCAACCC AAAGAGTGCT GATGCAGACT
GGGTCACAGA ACAGCTCGAC AAAATCAGCT ATGATGACCA CAAGTTGAAG GCAGGGACTA
ACACCAAGAA GGCGCTCCTG GAAGTATACA ACATGATGAG CTGGGGAGTG AACAACTTTC
CTGATAACTG GAACCGCACC CGCCATGTCA TTGTCCTCCT GACTGATGGC TTGCACAACA
TGGGCGGGGA TCCGGTCACG GTCATTCATG ATATTCGGGA CCTGCTGAAC ATTGGTAGAA
ATCGCAAAAA CCCAAGGGAG GATTATCTGG ACATCTACGT GTTTGGGGTT GGGCCTCTGG
TGAACCAAGA GAACATCAAT GCTTTGGCTT CCAAGAAGGA CAAGGAACAA CACGTGTTCA
AACTCAAGGA CGTAGATAAC CTGGAGGATG TTTTCTTCCA AATGCTTGAT GAAAGCCGGA
GTCTGGGTCT CTGTGGCATG GTTTGGGAGC ACAAGGACGG TACTGACTAC CACAAGCAGC
CGTGGCATGC CAAGATCTCA ATCACTCGCC CTTCAAAGGG CCATGAGAGC TGTATGGGTG
CCGTGGTGTC TGAGTACTTT GTGCTGACAG CTGCACACTG TTTCACTGTG GATGACGAGA
AACACTCCAT CAAGGTCAGC CTGGGAGGGA AGAAGCAGGA GTGGGAGATA GACCAAGTCT
TATTTCACCC AAACTATGAC CTCAACGCAA AGACCGCAAA AGATATTCCT GAATTTTATG
ACTATGACGT GGCCCTGATC AGGCTCTCGA AAAAGCTGAA GTATGACCAG ACCATCAGGC
CCATTTGTCT CCCCTGCACT GAGGGATCAA ATCAAGCTCT GAGGCTTCCT CTGACAACCA
CGTGCCAGCA ACAGATGCAA GAGCTGCTGC CTGCAAAGGA TGTCAAAGCC CTGTTTGTGT
CAGAGCTGAC CAAGGATCAC AGGAAGATAC TGACTCGGAA GGAGGTTTAC ATCAAGAATG
GGGAAAGGAA AGCTGCCTGT GAGAGAGATG CTCTGCAAGC CCAAGGCTAT GACAAGGTCA
AAGTCGTCTC TGAGGTGGTC ACCCCCAGGT TCCTTTGCAC TGGCGGGGTG ATTCCCTATG
CTGACCCCAA CACTTGCAAA GGTGACTCAG GGGGCCCCCT GATTATTCAT AAGAAGAGCC
GCTTTATTCA AGTTGGCGTG ATCAGCTGGG GCGTCGTGGA TATCTGCAAG CGGCAGCAGC
AGGCACCCTC TTACGCCCGA GACTTTCACA TCAACCTCTA CAAAGTGCTG CCCTGGCTCA
AGGAGAAACT CAAAGATGAG GATCTGGGTT TTCTCTAAGG GGTTTCCTGC TGGAAAGGGA
CATGAGATCA AATTAAAACA GCTGCGACAA CAAAAAAAAA AAAAAAAA
Deduced amino acid sequence: (length: 765) [FASTA format sequence]
MGSNRCPRLG LVPLILGLLS GGVSMTPLPE ARPQSPCSLE GIEIKGGTFH LLKEGLVLEY
VCPSGFYPYP VQIRTCRSSG SWSTLQTQDR KIVKRAECKA IRCPRPQDFE NGEYWPRAAY
YNLSDEISFH CYDGYTLRGS ANRTCQVTGR WDGQTAICDD GAGYCPNPGI PIGTRKVGTQ
YRLEDSVTYY CSRGLTLRGS QRRTCQEGGS WSGTEPSCQD SFMYDTPAEV AGAFLSSLTE
TIEGVDAEDG HIPGDQQKRK IVLDPSGPMN IYLVLDGSDS IGARNFTGAK NCLKDFIEKV
ASYGVKPKYG LVTYATDPKV LIRVSNPKSA DADWVTEQLD KISYDDHKLK AGTNTKKALL
EVYNMMSWGV NNFPDNWNRT RHVIVLLTDG LHNMGGDPVT VIHDIRDLLN IGRNRKNPRE
DYLDIYVFGV GPLVNQENIN ALASKKDKEQ HVFKLKDVDN LEDVFFQMLD ESRSLGLCGM
VWEHKDGTDY HKQPWHAKIS ITRPSKGHES CMGAVVSEYF VLTAAHCFTV DDEKHSIKVS
LGGKKQEWEI DQVLFHPNYD LNAKTAKDIP EFYDYDVALI RLSKKLKYDQ TIRPICLPCT
EGSNQALRLP LTTTCQQQMQ ELLPAKDVKA LFVSELTKDH RKILTRKEVY IKNGERKAAC
ERDALQAQGY DKVKVVSEVV TPRFLCTGGV IPYADPNTCK GDSGGPLIIH KKSRFIQVGV
ISWGVVDICK RQQQAPSYAR DFHINLYKVL PWLKEKLKDE DLGFL
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | CFB | complement factor B preproprotein [Homo sapiens]. | 1263 | 0.0 | |
|
| C2 | complement C2 isoform 1 preproprotein [Homo sapiens]. | 513 | e-145 | |
|
| CSMD2 | CUB and sushi domain-containing protein 2 [Homo sapiens]. | 84.3 | 5e-16 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Cfb | complement factor B isoform 1 [Mus musculus]. | 1234 | 0.0 | |
|
| C2 | complement C2 precursor [Mus musculus]. | 499 | e-141 | |
|
| Csmd3 | CUB and sushi domain-containing protein 3 [Mus musculus]. | 102 | 1e-21 | |
|
| Proc | vitamin K-dependent protein C [Mus musculus]. | 84.7 | 3e-16 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC474853 | PREDICTED: similar to Complement factor B precursor (C3/C5 convertase) (Properdin factor B) (Glycine-rich beta glycoprotein) (GBG) (PBF2) isoform 1 [Canis familiaris]. | 1293 | 0.0 | |
|
| LOC612401 | PREDICTED: similar to epidermis-specific serine protease-like protein [Canis familiaris]. | 71.2 | 4e-12 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CFB | complement factor B precursor [Bos taurus]. | 1348 | 0.0 | |
|
| C2 | complement C2 precursor [Bos taurus]. | 519 | e-147 | |
|
| SVEP1 | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1, partial [Bos taurus]. | 94.7 | 3e-19 | |
|
| LOC100336077 | PREDICTED: protease, serine, 21-like [Bos taurus]. | 71.6 | 3e-12 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| CFB | complement factor B [Sus scrofa]. | 1547 | 0.0 | |
|
| C2 | complement C2 [Sus scrofa]. | 517 | e-146 | |
|
| CSMD3 | PREDICTED: CUB and sushi domain-containing protein 3, partial [Sus scrofa]. | 93.6 | 5e-19 | |
|
| SVEP1 | PREDICTED: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Sus scrofa]. | 92.8 | 8e-19 | |
|
| SELE | E-selectin [Sus scrofa]. | 69.7 | 7e-12 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-08037 | 4.1 | TTTTCTCTAAGGGGTTTCCTGCTGGAAAGGGACATGAGATCAAATTAAAACAGCTGCGAC |
Assembly member: TOP