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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
LVR01_0062_H12
Library: LVR01 (Liver)
Individual: LWD4, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,212)
[FASTA format sequence]
CGGTGGCCGG CGTCCCCTGC CAGGAGTGGG CTGCCCAGGA GCCCCACAGA CACAGCATCT
TCACTCCAGG GACAAATCCA CGGGCAGGTC TGGAGAAAAA TTACTGCCGT AATCCTGACG
GTGACGACAA CGGTCCCTGG TGCTACACGA CAAACCCACA AAAGCTCTTT GACTACTGCG
ACGTCCCTCA GTGTGTAACC TCTTCATTTG ATTGCGGGAA GCCCAAGGTG GAGCCAAAGA
AGTGTCCTGC GAGGGTGGTA GGTGGGTGCG TGTCCATCCC ACACTCCTGG CCCTGGCAAA
TTAGCCTTCG ATACAGGTAC AGAGGGCACT TCTGCGGAGG CACTTTAATA TCCCCGGAGT
GGGTGCTGAC TGCTAAGCAC TGCCTGGAAA AGTCCTCAAG TCCTTCATCA TACAAGGTCA
TTTTGGGTGC ACACGAAGAG CACCGCCTTG GAGAAGGAGT TCAGGAGATA GACGTGTCCA
AGCTGTTCAA GGAGCCCTCT GGGGCGGACA TAGCCTTGCT CAAGCTGAGC AGCCCTGCCG
TCATCACTGA CAAGGTAATC CCGGCTTGTC TGCCAACCCC GAACTATGTG GTCGCCGACC
GGACAGCGTG TTACATCACT GGCTGGGGAG AAACCAAAGG CACGTACGGC GCTGGCTTAC
TCAAGGAAGC CCGGCTGCCC GTGATTGAGA ACAAAGTGTG TAATCGCTAC GAGTATCTGG
ATGGGAAGGT CAGCTCCAAA GAGCTGTGTG CGGGGCATCT GGCTGGAGGC ATCGACAGCT
GCCAGGGTGA CAGCGGAGGG CCTCTGGTGT GCTTTGAGAA GGACAAATAC ATTTTACAAG
GAGTCACTTC TTGGGGTCTT GGCTGTGCGC TCCCCAATAA GCCTGGTGTG TGTGTCCGTG
TTTCAAGGTT TGTTACTTGG ATTGAGGAAA TAATGAGAAG AAATTAATCC GATGGGAAAC
AGCGGGAAGT CTCAAGGGAT CTGGAAGCTG GACCTTGCGC AGGGAATTCA GCTCAGAAAT
AATTGACACT AATCTAAATG AGGCACTGTC CTTAGCTACC ATCTACTGGC ACATTTGTGT
GTGTGTGTAT TGTTGTGGAT AACTTTTTCC TGCCCATGGA CTGCTGGATT CTCTAATAAT
AAGGCAATGC AGCTATGCCA CTTGTTGAAA ATAAACTGTA CTTCCTTTAA CGTTTAAAAA
AAAAAAAAAA AA
Deduced amino acid sequence: (length: 70) [FASTA format sequence]
MGRSAPKSCV RGIWLEASTA ARVTAEGLWC ALRRTNTFYK ESLLGVLAVR SPISLVCVSV
FQGLLLGLRK
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | PLG | plasminogen isoform 1 precursor [Homo sapiens]. | 572 | e-163 | |
|
| LPA | apolipoprotein(a) precursor [Homo sapiens]. | 521 | e-148 | |
|
| MST1 | hepatocyte growth factor-like protein precursor [Homo sapiens]. | 240 | 2e-63 | |
|
| HGF | hepatocyte growth factor isoform 3 precursor [Homo sapiens]. | 210 | 2e-54 | |
|
| TMPRSS13 | transmembrane protease serine 13 isoform 1 [Homo sapiens]. | 184 | 1e-46 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Plg | plasminogen [Mus musculus]. | 547 | e-156 | |
|
| Mst1 | hepatocyte growth factor-like protein [Mus musculus]. | 243 | 2e-64 | |
|
| Hgf | hepatocyte growth factor precursor [Mus musculus]. | 213 | 3e-55 | |
|
| Hpn | serine protease hepsin isoform 2 [Mus musculus]. | 196 | 4e-50 | |
|
| Tmprss13 | transmembrane protease serine 13 [Mus musculus]. | 184 | 2e-46 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| PLG | PREDICTED: similar to Plasminogen precursor [Canis familiaris]. | 575 | e-164 | |
|
| LOC484768 | PREDICTED: similar to macrophage stimulating 1 (hepatocyte growth factor-like) [Canis familiaris]. | 248 | 8e-66 | |
|
| HGF | hepatocyte growth factor precursor [Canis lupus familiaris]. | 209 | 3e-54 | |
|
| LOC484583 | PREDICTED: similar to Serine protease hepsin (Transmembrane protease, serine 1) [Canis familiaris]. | 202 | 7e-52 | |
|
| LOC490057 | PREDICTED: similar to marapsin [Canis familiaris]. | 177 | 2e-44 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| PLG | plasminogen precursor [Bos taurus]. | 530 | e-150 | |
|
| MST1 | hepatocyte growth factor-like protein [Bos taurus]. | 248 | 6e-66 | |
|
| HGF | hepatocyte growth factor precursor [Bos taurus]. | 209 | 5e-54 | |
|
| HPN | serine protease hepsin [Bos taurus]. | 196 | 5e-50 | |
|
| CTRB1 | chymotrypsinogen B [Bos taurus]. | 183 | 3e-46 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| PLG | plasminogen precursor [Sus scrofa]. | 650 | 0.0 | |
|
| LOC100626310 | PREDICTED: hepatocyte growth factor-like protein-like [Sus scrofa]. | 259 | 3e-69 | |
|
| MST1 | PREDICTED: hepatocyte growth factor-like protein [Sus scrofa]. | 259 | 3e-69 | |
|
| LOC100623361 | PREDICTED: hepatocyte growth factor-like protein-like [Sus scrofa]. | 259 | 3e-69 | |
|
| PLAT | tissue-type plasminogen activator precursor [Sus scrofa]. | 177 | 8e-45 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-08190 | 4.1 | TGGATTCTCTAATAATAAGGCAATGCAGCTATGCCACTTGTTGAAAATAAACTGTACTTC |
Assembly member: TOP