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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  LVRM1_0011_B10

Library: LVRM1 (Liver)
Individual: M1, Meishan (Chinese)

Nucleotide sequence:   (length: 1,227)  [FASTA format sequence]
CCTCCCATCC CGTTTCCTCG GCCGCTCCGC TCCCTGGCGT GACTCGGCAC TGAGAGCCCC
GGGAGAAGAC GCCACGGTCG CCACCTCCTG TGTCCAGGCC TCGGCCTTCC TGAGTCTACC
CCCGTCCCCT CCCGGGTCGT CTTCTCCTTC AGTTTTGAAA CCGGTGGCGT CGCGGCCACC
TTGCCAGGCT CTCTGAGAAT GGTAGGTGTA AAGCCGGTCG GGAGTGACCC GGATTTCCAG
CCGGAGCTGA GCGGCGCGGG CTCCAGACTC GCTGTGGTCA AATTCACCAT GCGAGGGTGT
GGACCATGTT TAAGGATTGC CCCAGCATTC AGTTCTATGA GTAATAAGTA TCCACAAGCA
GTTTTCTTGG AAGTAGATGT ACATCAGTGT CAGGGAACTG CTGCCACCAA CAACATATCA
GCGACACCTA CATTTTTGTT TTTCCGAAAC AAAGTGAGAA TTGATCAGTA TCAAGGAGCA
GATGCCGTGG GATTAGAAGA AAAAATCAAG CAGCACTTAG AAAACGACCC TGGAAGCAAT
GAGGACACAG ATATTCCAAA AGGCTATATG GATTTAATGC CTTTTATTAA CAAAGCTGGC
TGTGAATGTC TTAATGAAAG TGACGAGCAT GGATTTGACA ACTGTTTACG AAAAGACATG
ACCTTCCTGG AATCTGATTG TGATGAACAG CTACTTATTA CTGTGGCATT CAATCAGCCT
GTTAAGCTTT ACTCAATGAA ATTTCAAGGG CCAGATAATG GTCAGGGTCC TAAATATGTA
AAAATTTTTA TCAATCTACC CCGATCTATG GATTTTGAAG AGGCAGAAAG AAGCGAACCA
ACTCAAGCTC TGGAACTAAC AGAGGATGAT ATTAAAGAAG ATGGTATTGT TCCACTTCGT
TATGTTAAGT TTCAGAATGT TAACAGTGTA ACTATATTTG TTCAGTCCAA TCAAGGTGAA
GAAGAAACAA CAAGAATTTC ATATTTTACT TTTATTGGGA CTCCGGTCCA GGCAACAAAT
ATGAATGACT TCAAACGAGT AGTTGGCAAA AAAGGAGAAA GCCACTGAGG TACAAAAGAC
ACTGGAAGAC CGTATTGCAA TCAGATCTAC AGCTCCTGGA TAATTGCTTG ATTCTCGCCA
GAGACTTTTC AATATTTCAT TCATTGCCAT TACCAATAAA TCATTGCTTT TGTTCGGATG
GTAAAAAAAA AAAAAAAAAA AAAAAAA

Deduced amino acid sequence:  (length: 289) [FASTA format sequence]
MVGVKPVGSD PDFQPELSGA GSRLAVVKFT MRGCGPCLRI APAFSSMSNK YPQAVFLEVD
VHQCQGTAAT NNISATPTFL FFRNKVRIDQ YQGADAVGLE EKIKQHLEND PGSNEDTDIP
KGYMDLMPFI NKAGCECLNE SDEHGFDNCL RKDMTFLESD CDEQLLITVA FNQPVKLYSM
KFQGPDNGQG PKYVKIFINL PRSMDFEEAE RSEPTQALEL TEDDIKEDGI VPLRYVKFQN
VNSVTIFVQS NQGEEETTRI SYFTFIGTPV QATNMNDFKR VVGKKGESH

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		TXNL1	thioredoxin-like protein 1 [Homo sapiens].	589	e-168	O
		TXN	thioredoxin [Homo sapiens].	85.9	7e-17	O
		TXNDC2	thioredoxin domain-containing protein 2 isoform 1 [Homo sapiens].	73.9	3e-13
		TXNDC8	thioredoxin domain-containing protein 8 [Homo sapiens].	65.1	1e-10

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Txnl1	thioredoxin-like protein 1 [Mus musculus].	587	e-168	O
		Txn1	thioredoxin [Mus musculus].	85.1	1e-16	O
		Txndc2	thioredoxin domain-containing protein 2 isoform 1 [Mus musculus].	71.6	1e-12
		Txndc8	thioredoxin domain-containing protein 8 [Mus musculus].	65.5	8e-11

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC483970	PREDICTED: similar to Thioredoxin-like protein 1 (32 kDa thioredoxin-related protein) [Canis familiaris].	523	e-148	O
		LOC474798	PREDICTED: similar to Thioredoxin (ATL-derived factor) (ADF) (Surface associated sulphydryl protein) (SASP) [Canis familiaris].	83.2	5e-16
		LOC490552	PREDICTED: similar to Thioredoxin domain containing protein 2 (Spermatid-specific thioredoxin-1) (Sptrx-1) [Canis familiaris].	73.9	3e-13
		LOC477869	PREDICTED: similar to Thioredoxin-like 2 protein (PKC-interacting cousin of thioredoxin) (PKCq-interacting protein) (PKC-theta-interacting protein) [Canis familiaris].	63.2	5e-10
		LOC612304	PREDICTED: similar to thioredoxin family Trp26 [Canis familiaris].	59.3	7e-09

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		TXNL1	thioredoxin-like protein 1 [Bos taurus].	589	e-168
		TXN	thioredoxin [Bos taurus].	87	3e-17	O
		TXNDC8	thioredoxin domain-containing protein 8 [Bos taurus].	79.3	6e-15
		PITHD1	PITH domain-containing protein 1 [Bos taurus].	59.3	7e-09
		GLRX3	glutaredoxin-3 [Bos taurus].	58.5	1e-08

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		LOC100512385	PREDICTED: thioredoxin-like protein 1-like, partial [Sus scrofa].	325	3e-89
		TXN	thioredoxin [Sus scrofa].	85.9	4e-17
		LOC100623715	PREDICTED: thioredoxin domain-containing protein 2-like [Sus scrofa].	67.4	2e-11
		TXNDC8	thioredoxin domain-containing protein 8 [Sus scrofa].	63.2	3e-10
		LOC100627028	PREDICTED: thioredoxin-like [Sus scrofa].	61.6	9e-10

Oligo-microarray probe:      TOP

Probe ID	Rel.	Probe sequence
AGPOA4-08464	4.1	GGATAATTGCTTGATTCTCGCCAGAGACTTTTCAATATTTCATTCATTGCCATTACCAAT

Assembly member:      TOP

Release	Contig/Singlet	Clones	Direction
20030531	20030531C-000521	11	fwd
20030826	20030826C-003999	12	fwd
20040204	20040204C-004566	9	fwd
20050322	20050322C-005468	19	fwd
20060611	20060611C-006111	25	fwd
20070806	20070806C-000999	25	fwd
20080515	20080515C-001903	27	fwd
20101001	20101001C-007101	32	fwd
20110601	20110601C-007774	37	fwd