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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  LVRM1_0045_D02

Library: LVRM1 (Liver)
Individual: M1, Meishan (Chinese)

Nucleotide sequence:   (length: 2,705)  [FASTA format sequence]
AAGTCCCAAA ATGGACCATA AAGAGGTAGT TCTTCTCCTT CTCTTATTTC TGAAATCAGG
TCTCGGGGAC TCTCTGGATG ACTATGTCAA TACTCAAGGA GCTTTCCTGT TCAGTTTGTC
TCGGAAGCAG GTGGCAGCCA GGAGCGTGGA AGAATGTGCA GCCAAGTGTG AGGCGGAAAC
AAACTTCATT TGCAGGGCTT TCCAGTATCA CAGTAAAGAT CAGCAGTGTG TGGTGATGGC
TGAGAACAGC AAGACCTCTC CCATCGCTAG GATGAGAGAC GTGGTTCTAT TCGAGAAGAG
AATCTATCTC TCCGAGTGCA AGACTGGAAA TGGGAAGAAC TACAGAGGGA CCACGTCCAA
AACGAAAAGT GGTGTCATCT GTCAAAAATG GAGTGTCAGC TCTCCGCACA TACCCAAGTA
TTCACCTGAA AAGTTTCCTT TAGCGGGACT GGAGGAGAAC TACTGCAGGA ACCCAGACAA
CGATGAAAAG GGACCCTGGT GTTACACCAC TGACCCAGAG ACCCGATTCG ACTACTGCGA
CATCCCTGAG TGTGAAGATG AATGCATGCA CTGCAGTGGA GAACATTATG AGGGCAAAAT
TTCCAAGACC ATGTCGGGGA TTGAATGCCA GTCTTGGGGC TCTCAGAGCC CACATGCTCA
CGGATACCTT CCTTCCAAAT TTCCAAACAA GAATCTGAAG ATGAATTACT GCCGTAACCC
GGACGGGGAG CCCCGCCCAT GGTGCTTCAC CACGGATCCC AACAAACGCT GGGAATTCTG
TGACATCCCG AGATGCACCA CACCCCCACC AACTTCCGGG CCAACGTATC AGTGTCTGAA
GGGAAGAGGT GAAAACTACC GAGGGACAGT GTCTGTCACT GCATCTGGGC ACACCTGTCA
ACGCTGGAGT GCGCAGAGCC CCCACAAGCA CAACAGGACC CCCGAAAACT TTCCCTGCAA
AAATCTGGAG GAGAACTACT GCCGTAACCC TGATGGAGAA ACGGCTCCAT GGTGCTACAC
AACCGACAGC GAGGTGAGGT GGGATTACTG CAAGATACCG TCCTGTGGGT CCTCCACGAC
ATCCACGGAG CATCTGGATG CCCCCGTGCC ACCCGAGCAA ACCCCTGTCG CCCAGGACTG
CTACAGAGGC AATGGGGAGA GTTACCGAGG CACGTCTTCC ACAACCATCA CAGGAAGAAA
ATGTCAGTCC TGGGTATCCA TGACGCCACA CCGGCATGAG AAGACCCCAG GAAACTTCCC
AAATGCTGGC TTAACAATGA ACTACTGCAG GAACCCAGAC GCTGATAAAA GCCCTTGGTG
CTACACCACC GATCCAAGAG TGAGATGGGA GTACTGCAAC CTGAAGAAAT GCTCAGAGAC
AGAACAGCAG GTCACAAACT TTCCAGCTAT TGCGCAGGTT CCCAGTGTAG AGGATCTTTC
GGAAGACTGC ATGTTCGGGA ATGGGAAAAG GTACCGGGGC AAGAGGGCCA CTACGGTGGC
CGGCGTCCCC TGCCAGGAGT GGGCTGCCCA GGAGCCCCAC AGACACAGCA TCTTCACTCC
AGAGACAAAT CCACGGGCAG GTCTGGAGAA AAATTACTGC CGTAATCCTG ACGGCGACGA
CAACGGTCCC TGGTGCTACA CGACAAACCC ACAAAAGCTC TTTGACTACT GTGACATCCC
TCAGTGTGTA ACCTCTTCAT TTGATTGCGG GAAGCCCAAG GTGGAGCCAA AGAAGTGTCC
TGCGAGGGTG GTAGGTGGGT GCGTGTCCAT CCCACACTCC TGGCCCTGGC AAGTTAGCCT
TCGATACAGG TACAGAGGGC ACTTCTGCGG AGGCACTTTA ATATCCCCGG AGTGGGTGCT
GACTGCTAAG CACTGCCTGG AAAAGTCCTC AAGTCCTTCA TCATACAAGG TCATTTTGGG
TGCACACGAA GAGCACCACC TTGGAGAAGG AGTTCAGGAG ATAGACGTGT CCAAGCTGTT
CAAGGAGCCC TCTGGGGCGG ACATAGCCTT GCTCAAGCTG AGCAGCCCTG CCGTCATCAC
TGACCAGGTA ATCCCGGCTT GTCTGCCAAC CCCGAACTAT GTGGTCGCCG ACCGGACAGC
GTGTTACATC ACTGGCTGGG GAGAAACCAA AGGCACGTAC GGCGCTGGCT TACTCAAGGA
AGCCCGGCTG CCCGTGATTG AGAACAAAGT GTGTAATCGC TACGAGTATC TGGACGGGAA
GGTCAGCTCC AAAGAGCTGT GTGCGGGGCA TCTGGCTGGA GGCATCGACA GCTGCCAGGG
TGACAGCGGA GGGCCTCTGG TGTGCTTTGA GAAGGACAAA TACATTTTAC AAGGAGTCAC
TTCTTGGGGT CTTGGCTGTG CGCTCCCCAA TAAGCCTGGT GTGTATGTCC GTGTTTCAAG
GTTTGTTACT TGGATTGAGG AAATAATGAG AAGAAATTAA TCCGATGGGA AACAGCGGGA
AGTCTCAAGG GATCTGGAAG CTGGACCTTG CGCAGGGAAT TCAGCTCAGA AATAGTTGAC
ACTAATCTAA ATGAGGCACT GTCCTTAGCT ACCATCTACT GGCACATTTG TGTGTGTGTG
TATTGTTGTG GATAACTTTT TCCTGCCCAT GGACTGCTGG ATTCTCTAAT AATAAGGCAA
TGCAGCTATG CCACTTGTTG AAAATAAACT GTACTTCCTT TAAAAAAAAA AAAAAAAAAA
AAAAA

Deduced amino acid sequence:  (length: 809) [FASTA format sequence]
MDHKEVVLLL LLFLKSGLGD SLDDYVNTQG AFLFSLSRKQ VAARSVEECA AKCEAETNFI
CRAFQYHSKD QQCVVMAENS KTSPIARMRD VVLFEKRIYL SECKTGNGKN YRGTTSKTKS
GVICQKWSVS SPHIPKYSPE KFPLAGLEEN YCRNPDNDEK GPWCYTTDPE TRFDYCDIPE
CEDECMHCSG EHYEGKISKT MSGIECQSWG SQSPHAHGYL PSKFPNKNLK MNYCRNPDGE
PRPWCFTTDP NKRWEFCDIP RCTTPPPTSG PTYQCLKGRG ENYRGTVSVT ASGHTCQRWS
AQSPHKHNRT PENFPCKNLE ENYCRNPDGE TAPWCYTTDS EVRWDYCKIP SCGSSTTSTE
HLDAPVPPEQ TPVAQDCYRG NGESYRGTSS TTITGRKCQS WVSMTPHRHE KTPGNFPNAG
LTMNYCRNPD ADKSPWCYTT DPRVRWEYCN LKKCSETEQQ VTNFPAIAQV PSVEDLSEDC
MFGNGKRYRG KRATTVAGVP CQEWAAQEPH RHSIFTPETN PRAGLEKNYC RNPDGDDNGP
WCYTTNPQKL FDYCDIPQCV TSSFDCGKPK VEPKKCPARV VGGCVSIPHS WPWQVSLRYR
YRGHFCGGTL ISPEWVLTAK HCLEKSSSPS SYKVILGAHE EHHLGEGVQE IDVSKLFKEP
SGADIALLKL SSPAVITDQV IPACLPTPNY VVADRTACYI TGWGETKGTY GAGLLKEARL
PVIENKVCNR YEYLDGKVSS KELCAGHLAG GIDSCQGDSG GPLVCFEKDK YILQGVTSWG
LGCALPNKPG VYVRVSRFVT WIEEIMRRN


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPLGplasminogen isoform 1 precursor [Homo sapiens]. 14160.0O
Contig/Assembly ProteinLPAapolipoprotein(a) precursor [Homo sapiens]. 9880.0
Contig/Assembly ProteinHGFhepatocyte growth factor isoform 1 preproprotein [Homo sapiens]. 507e-143
Contig/Assembly ProteinHPNserine protease hepsin [Homo sapiens]. 2091e-53


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPlgplasminogen [Mus musculus]. 13760.0O
Contig/Assembly ProteinHgfhepatocyte growth factor precursor [Mus musculus]. 509e-144
Contig/Assembly ProteinMst1hepatocyte growth factor-like protein [Mus musculus]. 501e-141
Contig/Assembly ProteinPlattissue-type plasminogen activator preproprotein [Mus musculus]. 2374e-62
Contig/Assembly ProteinTmprss3transmembrane protease serine 3 isoform 2 [Mus musculus]. 1973e-50


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPLGPREDICTED: similar to Plasminogen precursor [Canis familiaris]. 14430.0O
Contig/Assembly ProteinHGFhepatocyte growth factor precursor [Canis lupus familiaris]. 503e-142
Contig/Assembly ProteinLOC484768PREDICTED: similar to macrophage stimulating 1 (hepatocyte growth factor-like) [Canis familiaris]. 491e-138
Contig/Assembly ProteinLOC482840PREDICTED: similar to Tissue-type plasminogen activator precursor (tPA) (t-PA) (t-plasminogen activator) [Canis familiaris]. 2583e-68
Contig/Assembly ProteinHGFACPREDICTED: hepatocyte growth factor activator isoform 1 [Canis familiaris]. 1907e-48


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPLGplasminogen precursor [Bos taurus]. 14220.0O
Contig/Assembly ProteinHGFhepatocyte growth factor precursor [Bos taurus]. 499e-141O
Contig/Assembly ProteinMST1hepatocyte growth factor-like protein [Bos taurus]. 429e-120O
Contig/Assembly ProteinPLATtissue-type plasminogen activator precursor [Bos taurus]. 2412e-63O
Contig/Assembly ProteinTMPRSS13PREDICTED: transmembrane protease, serine 13 [Bos taurus]. 1952e-49


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinPLGplasminogen precursor [Sus scrofa]. 16980.0
Contig/Assembly ProteinLOC100525120PREDICTED: hepatocyte growth factor-like [Sus scrofa]. 504e-142
Contig/Assembly ProteinMST1PREDICTED: hepatocyte growth factor-like protein [Sus scrofa]. 501e-142
Contig/Assembly ProteinLOC100623361PREDICTED: hepatocyte growth factor-like protein-like [Sus scrofa]. 501e-142
Contig/Assembly ProteinPLAUurokinase-type plasminogen activator [Sus scrofa]. 1881e-47


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-086814.1CTGGATTCTCTAATAATAAGGCAATGCAGCTATGCCACTTGTTGAAAATAAACTGTACTT


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003082620030826S-0075421fwd
2004020420040204S-0075041fwd
2005032220050322S-0144231fwd
2006061120060611S-0220171fwd
2007080620070806S-0368691fwd
2010100120101001S-0611441fwd
2011060120110601S-0667201fwd