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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
LVRM1_0081_G06
Library: LVRM1 (Liver)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,625)
[FASTA format sequence]
GCCATGTGGG TGTACCTGGC GGTCCTCGTG GGCCTGTACT ACCTCCTGCG CTGGCAGCGG
GAGAGGCAGG TGGTGAGCCA CCTGAGGGAC AAGTATGTCT TCATCACGGG CTGTGACTCG
GGCTTCGGGA ACCTGCTGGC CAGGCAGCTG GACCTGCGGG GCTTGAGGGT CCTGGCTGCA
TGTCTGACGG AGCAGGGGGC CCAGCAGCTG AGGAAGCAGA CGTCAGACAG GCTGGAGACG
GTGCTCCTGG ACGTGACCAA GACAGAGAGC GTCGCTGCGG CCAAGGAGTG GGTGAAGGAG
CGTGTGGGGG ACAGAGGACT CTGGGGCCTG GTGAACAATG CTGGCATCTC CGTAATCTCT
GCTCCCAATG AGTGGCTGAC CAAACAGGAC TTCGTGAAGA TATTGGATGT GAACCTGTTG
GGGATGGTCG ACGTGACCCT GCAGCTGCTG CCCCTCGTGA GGAAGACCAG GGGCCGTGTG
GTCAACGTCT CCAGTGTCAT GGGCCGGGTG TCCCTCTTTG GCGGCGGCTA CTGCCTGTCC
AAGTACGGTG TTGAGGCCTT CTCAGACTCC CTCAGGAGGG AGCTCTCCTA CTTTGGGGTG
AAGGTGGCTA TGATTGAGCC CGGTTTCTTC AAGACCAATG TAACCAAACC TGAGGCAATT
TCTCAGGGCT ACAAGACAGC ATGGAATCAG GCCAGCCCAG AGATCAAGGA TCTCTATGGG
GACACATTCC TGGCCTTATG TGAGAAAGCA GTTTGCTCAA TGGAGACAAG TTGCAATCAG
GATCTCTCCT TGGTGACTGA CTGCATGGAG CACGCCCTGA CCTCCTGCCA CCCCCGCACG
CGATACTCAC CTGGCTGGGA CGCCAAGCTC TTCTACCTCC CCATGAGCTA CTTGCCCACC
TTCCTCGTGG ATCTCATGAT ATACTATGGT GCCCCTAGGC CTGCTAAGGC CCTGTAACCC
AAACTGGGGT ACATGGTAGG GGGAGCTGGG TGTGTTAGGG AGGGGAGGCA TCCATGGGAG
GGAAATATAG TGGGGAGAGG GCTTCTATGT CACCAGGGAC ACCCATCCCA CCTCCTCCCC
ACATCGTCCC CAGGCTTCTC TGGGGACATG ACTCAGGACT CTGGGGATAT TAGGATAAAG
AAGCAAGTTT TGTGGTGAGG AGCTGGGACC AATAGCTCAT GTCTGTGTCT TGTTTCTTAC
CAGCCTCTCA GGGCCCTGGA CCTTAGGCCT TCCTGCCACT CTGAACAATC CACACTTTGG
GGAGGGCGTG AGCAGCTGGG AGGACATCAG CCCCCACCCT CTGTCCCAGT CTGCCTCTTC
TGGGTGTGCC CTGGCCCTGG CCGTCTCTCC CTCCTGTGAG CTAGAAATGG ACATGGACGT
GAAGGCCCAT CTCCCCTGAA GGTTCCTGTG GGCAGGGGTG AGGGTGGAGA GTGGCCACCA
GCCTGACACA GCAGCCTGGG TGCCAGCTCA GGAGACCTTG GCTGGAAGGC GGTGTTCTCA
GTGGGGGTCC TGAGAGAGGA CACAGAAACC AGGTTTTGTT TTGTCTTGAA ACCATGCGTT
TCCATGGATT AAATTTTCCT TAAAATAAAC ATTGACAGTT GACCCAGAAA AAAAAAAAAA
AAAAA
Deduced amino acid sequence: (length: 317) [FASTA format sequence]
MWVYLAVLVG LYYLLRWQRE RQVVSHLRDK YVFITGCDSG FGNLLARQLD LRGLRVLAAC
LTEQGAQQLR KQTSDRLETV LLDVTKTESV AAAKEWVKER VGDRGLWGLV NNAGISVISA
PNEWLTKQDF VKILDVNLLG MVDVTLQLLP LVRKTRGRVV NVSSVMGRVS LFGGGYCLSK
YGVEAFSDSL RRELSYFGVK VAMIEPGFFK TNVTKPEAIS QGYKTAWNQA SPEIKDLYGD
TFLALCEKAV CSMETSCNQD LSLVTDCMEH ALTSCHPRTR YSPGWDAKLF YLPMSYLPTF
LVDLMIYYGA PRPAKAL
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | RDH16 | retinol dehydrogenase 16 [Homo sapiens]. | 473 | e-133 | O |
|
| HSD17B6 | 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Homo sapiens]. | 397 | e-110 | |
|
| SDR9C7 | short-chain dehydrogenase/reductase family 9C member 7 [Homo sapiens]. | 335 | 9e-92 | |
|
| RDH5 | 11-cis retinol dehydrogenase [Homo sapiens]. | 320 | 3e-87 | |
|
| BDH1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo sapiens]. | 185 | 9e-47 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Rdh1 | retinol dehydrogenase 1 (all trans) [Mus musculus]. | 463 | e-130 | |
|
| Rdh16 | retinol dehydrogenase 16 [Mus musculus]. | 456 | e-128 | |
|
| Rdh7 | retinol dehydrogenase 7 [Mus musculus]. | 456 | e-128 | |
|
| Rdh5 | retinol dehydrogenase 5 [Mus musculus]. | 324 | 1e-88 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC474409 | PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Canis familiaris]. | 488 | e-138 | O |
|
| LOC481118 | PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis familiaris]. | 400 | e-111 | O |
|
| HSD11B2 | PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris]. | 139 | 6e-33 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| RDH16 | retinol dehydrogenase 16 [Bos taurus]. | 514 | e-145 | O |
|
| HSD17B6 | 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus]. | 389 | e-108 | |
|
| SDR9C7 | short-chain dehydrogenase/reductase family 9C member 7 [Bos taurus]. | 349 | 5e-96 | |
|
| DHRS9 | dehydrogenase/reductase SDR family member 9 precursor [Bos taurus]. | 324 | 2e-88 | |
|
| DHRS7B | dehydrogenase/reductase SDR family member 7B [Bos taurus]. | 90.5 | 4e-18 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| RDH16 | retinol dehydrogenase 16 (all-trans) [Sus scrofa]. | 611 | e-175 | |
|
| LOC100626199 | PREDICTED: retinol dehydrogenase 16-like isoform 2 [Sus scrofa]. | 522 | e-148 | |
|
| LOC100512656 | PREDICTED: retinol dehydrogenase 16-like [Sus scrofa]. | 514 | e-146 | |
|
| LOC100519057 | PREDICTED: dehydrogenase/reductase SDR family member 9-like, partial [Sus scrofa]. | 261 | 1e-69 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-08935 | 4.1 | GAAACCATGCGTTTCCATGGATTAAATTTTCCTTAAAATAAACATTGACAGTTGACCCAG |
Assembly member: TOP