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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
LVRM1_0122_H12
Library: LVRM1 (Liver)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,469)
[FASTA format sequence]
GCAGACTGGT TTAAATTACC CACCAGGAAA TATGTGGCTG TAGGAGTATG CTTAATTCAT
GCTCATTGAA AGTGAGCCAG GGCTGTTTTC TCCCCCTCCC TCCTTGCCTC CCGGTTCATA
TAACCCCCGC TGCCTCCAGC CTGCCTTTGC CCACTTGACT TGCTGGCCCT GAGCACGGAG
AGGTGCAGGG AGAATCTGAG AATGGGCACG TTCTTCTCTG AGACAGGGTG GCTCTGCCTG
ACTGTCACGG CAGTGCTGGG AGCAGTAATT CTTTGCAAAC TCAAGAAGAA CCACAGGCAG
GAGGGCAGAA AGATGGTCTG CCTGGCTGGC CTCTGGGGAG GGGCTTGCCT GCTCAGCCTC
TCTCTCTTCT GGGGCTTGAT CCTCTTCTCC CTGTCATGTT TTCTCATGTA TGCTTACTTT
TCTGGCCAAG AGTTTTTACC TGTGGATCAA AAGGCGGTGC TGATCACAGG TGGCGATTCT
GGGATTGGCC ATGCTTTGTC CAAGTATCTG GATAAGCTGG GATTCACAGT ATTTGCTGGA
GTTCTGGATG AAAAGGGATC AGGAGCAGAG GAACTACGAA GAACCTGCTC CAAGCACCTG
TCTGTGCTCC AGCTGGACAT CACCAACTCG CAGCAGATAA GAGATGCTCA CAGCAAAGTG
ATGGAAAAGG TGCAGAACAG AGGACTGTGG GCTGTGGTCA ACAACGCAGG GATCCTTGGC
TTCCCAATCG ATGGGGAGCT CATTCCCATG ACCCAATACA AACGATGCAT GGCCGTGAAC
TTCTTCGGGG CCGTGGAAGT CACCAAGGCA TTTTTGCCTC TTCTTAGGAA ATCCAAGGGC
AGGCTGGTGA ACATCAGCAG CATGGCAGGA GGGGTTCCAA TGGAGAAGAT GGCGGCCTAC
AGCTCAACCA AGGCAGCTCT GACCATGTTT TCGGCAGTCA TGAGAAAAGA GCTATCCAAA
TGGGGAGTTA AAGTCTCTGT CATCCAGCCT GGAAGCTTCC AAACAAACAT CGCAGGCACG
AGTGACCTGT GGGACAAGCT GGAGAAAAAC ATCCTGGATG ACCTCACCCC TAACCTGCAG
GAGGACTACG GCCAGGACTA TATCCTTAAG CAACGCAGTT TTCTCAAGTT CATGAGCAAC
AGCTCTGAAC CGGACGTCTC CCCAGTGCTC CTGGACGTCC AGCATGCCAT CTCTGCTAAG
AGCCCCTATG CATTTTACAC GCCCGGAAAA ATGTCTTTTT TGTGGCTCTG CTTTGCTTCA
TTTAGCCCTA CTGTCCTATT TGATTACTTT AGCAAAAGCT CACATAGTTT TACAAGGGGC
ATGCCCAGAG CATTGAGCAA GGCTAACTGG AAGAATGAGG CCATGTAGGC AAATACGTGG
GAAATGATCT ATTGTTGGAA TGAAAGGGAG TTTCCTGCTT CCCATTAAAA TTGTGGTTTA
TCCTACCTTG CAAAAAAAAA AAAAAAAAA
Deduced amino acid sequence: (length: 388) [FASTA format sequence]
MGTFFSETGW LCLTVTAVLG AVILCKLKKN HRQEGRKMVC LAGLWGGACL LSLSLFWGLI
LFSLSCFLMY AYFSGQEFLP VDQKAVLITG GDSGIGHALS KYLDKLGFTV FAGVLDEKGS
GAEELRRTCS KHLSVLQLDI TNSQQIRDAH SKVMEKVQNR GLWAVVNNAG ILGFPIDGEL
IPMTQYKRCM AVNFFGAVEV TKAFLPLLRK SKGRLVNISS MAGGVPMEKM AAYSSTKAAL
TMFSAVMRKE LSKWGVKVSV IQPGSFQTNI AGTSDLWDKL EKNILDDLTP NLQEDYGQDY
ILKQRSFLKF MSNSSEPDVS PVLLDVQHAI SAKSPYAFYT PGKMSFLWLC FASFSPTVLF
DYFSKSSHSF TRGMPRALSK ANWKNEAM
SNP mapping information
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | HSD17B2 | estradiol 17-beta-dehydrogenase 2 [Homo sapiens]. | 482 | e-136 | O |
|
| HSD11B2 | corticosteroid 11-beta-dehydrogenase isozyme 2 [Homo sapiens]. | 198 | 1e-50 | |
|
| BDH1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo sapiens]. | 174 | 1e-43 | O |
|
| RDH16 | retinol dehydrogenase 16 [Homo sapiens]. | 162 | 7e-40 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Hsd17b2 | estradiol 17-beta-dehydrogenase 2 [Mus musculus]. | 435 | e-122 | O |
|
| Hsd11b2 | corticosteroid 11-beta-dehydrogenase isozyme 2 [Mus musculus]. | 208 | 1e-53 | |
|
| Bdh1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Mus musculus]. | 179 | 5e-45 | |
|
| Rdh1 | retinol dehydrogenase 1 (all trans) [Mus musculus]. | 167 | 1e-41 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC489690 | PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis familiaris]. | 507 | e-143 | O |
|
| HSD11B2 | PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris]. | 192 | 9e-49 | |
|
| LOC488037 | PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor [Canis familiaris]. | 179 | 5e-45 | |
|
| LOC474409 | PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Canis familiaris]. | 165 | 1e-40 | |
|
| LOC481118 | PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis familiaris]. | 155 | 9e-38 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| HSD17B2 | estradiol 17-beta-dehydrogenase 2 [Bos taurus]. | 561 | e-160 | O |
|
| HSD11B2 | corticosteroid 11-beta-dehydrogenase isozyme 2 [Bos taurus]. | 211 | 2e-54 | |
|
| BDH1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Bos taurus]. | 184 | 2e-46 | |
|
| HSD17B6 | 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus]. | 165 | 8e-41 | |
|
| DHRS7 | dehydrogenase/reductase SDR family member 7 [Bos taurus]. | 76.6 | 5e-14 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| HSD17B2 | estradiol 17-beta-dehydrogenase 2 [Sus scrofa]. | 713 | 0.0 | |
|
| LOC100625185 | PREDICTED: estradiol 17-beta-dehydrogenase 2-like, partial [Sus scrofa]. | 265 | 5e-71 | |
|
| LOC100626806 | PREDICTED: estradiol 17-beta-dehydrogenase 2-like [Sus scrofa]. | 263 | 2e-70 | |
|
| HSD11B2 | corticosteroid 11-beta-dehydrogenase isozyme 2 [Sus scrofa]. | 210 | 2e-54 | |
|
| LOC100626104 | PREDICTED: short-chain dehydrogenase/reductase family 9C member 7-like [Sus scrofa]. | 154 | 1e-37 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-09213 | 4.1 | CTATTGTTGGAATGAAAGGGAGTTTCCTGCTTCCCATTAAAATTGTGGTTTATCCTACCT |
Assembly member: TOP