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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  LVRM1_0158_E11

Library: LVRM1 (Liver)
Individual: M1, Meishan (Chinese)

Nucleotide sequence:   (length: 1,641)  [FASTA format sequence]
GTTTCTGTCC CCCGCAAAGC CGTGTGGGTG TACCTGGCGG TCCTCGTGGG CCTGTACTAC
CTCCTGCGCT GGCAGCGGGA GGGGCAGGTG GTGAGCCACC TGAGGGACAA GTATGTCTTC
ATCACGGGCT GTGACTCGGG CTTCGGGAAC CTGCTGGCCA GGCAGCTGGA CCTGCGGGGC
TTGAGGGTCC TGGCTGCATG TCTGACGGAG CAGGGGGCCC AGCAGCTGAG GAAGCAGACG
TCAGACAGGC TGGAGACGGT GCTCCTGGAC GTGACCAAGA CAGAGAGCGT CGCTGCGGCC
AAGGAGTGGG TGAAGGAGCG TGTGGGGGAC AGAGGACTCT GGGGCCTGGT GAACAATGCT
GGCATCTCCG TAATCTCTGC TCCCAATGAG TGGCTGACCA AACAGGACTC CGTGAAGATA
TTGGATGTGA ACCTGTTGGG G
ATGGTCGAC GTGACCCTGC AGCTGCTGCC CCTCGTGAGG
AAGACCAGGG GCCGTGTGGT CAACGTCTCC AGTGTCATGG GCCGGGTGTC CCTCTTTGGC
GGCGGCTACT GCCTGTCCAA GTACGGTGTT GAGGCCTTCT CGGACTCCCT CAGGAGGGAG
CTCTCCTACT TTGGGGTGAA GGTGGCTATG ATTGAGCCCG GTTTCTTCAA GACCAATGTA
ACCAAACCTG AGGCAATTTC TCAGGGCTAC AAGACAGCAT GGAATCAGGC CAGCCCAGAG
ATCAAGGATC TCTATGGGGA CACATTCCTG GCCTTATGTG AGAAAGCAGT TTGCTCAATG
GAGACAAGTT GCAATCAGGA TCTCTCCTTG GTGACTGACT GCATGGAGCA CGCCCTGACC
TCCTGCCACC CCCGCACGCG ATACTCACCT GGCTGGGACG CCAAGCTCTT CTACCTCCCC
ATGAGCTACT TGCCCACCTT CCTCGTGGAT CTCATGATAT ACTATGGTGC CCCTAGGCCT
GCTAAGGCCC TGTAACCCAA ACTGGGGTAC ATGGTAGGGG GAGCTGGGTG TGTTAGGGAG
GGGAGGCATC CATGGGAGGG AAATATAGTG GGGAGAGGGC TTCTATGTCA CCAGGGACAC
CCATCCCACC TCCTCCCCAC ATCGTCCCCA GGCTTCTCTG GGGACATGAC TCAGGACTCT
GGGGATATTA GGATAAAGAA GCAAGTTTTG TGGTGAGGAG CTGGGACCAA TAGCTCATGT
CTGTGTCTTG TTTCTTACCA GCCTCTCAGG GCCCTGGACC TTAGGCCTTC CTGCCACTCT
GAACAATCCA CACTTTGGGG AGGGCGTGAG CAGCTGGGAG GACATCAGCC CCCACCCTCT
GTCCCAGTCT GCCTCTTCTG GGTGTGCCCT GGCCCTGGCC GTCTCTCCCT CCTGTGAGCT
AGAAATGGAC ATGGACGTGA AGGCCCATCT CCCCTGAAGG TTCCTGTGGG CAGGGGTGAG
GGTGGAGAGT GGCCACCAGC CTGACACAGC AGCCTGGGTG CCAGCTCAGG AGACCTTGGC
TGGAAGGCGG TGTTCTCAGT GGGGGTCCTG AGAGAGGACA CAGAAACCAG GTTTTGTTTT
GTCTTGAAAC CATGCGTTTC CATGGATTAA ATTTTCCTTA AAATAAACAT TGACAGTTGA
AAAAAAAAAA AAAAAAAAAA A

Deduced amino acid sequence:  (length: 177) [FASTA format sequence]
MVDVTLQLLP LVRKTRGRVV NVSSVMGRVS LFGGGYCLSK YGVEAFSDSL RRELSYFGVK
VAMIEPGFFK TNVTKPEAIS QGYKTAWNQA SPEIKDLYGD TFLALCEKAV CSMETSCNQD
LSLVTDCMEH ALTSCHPRTR YSPGWDAKLF YLPMSYLPTF LVDLMIYYGA PRPAKAL


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRDH16retinol dehydrogenase 16 [Homo sapiens]. 466e-131
Contig/Assembly ProteinHSD17B617-beta-hydroxysteroid dehydrogenase type 6 precursor [Homo sapiens]. 396e-110
Contig/Assembly ProteinSDR9C7short-chain dehydrogenase/reductase family 9C member 7 [Homo sapiens]. 3328e-91
Contig/Assembly ProteinRDH511-cis retinol dehydrogenase [Homo sapiens]. 3164e-86
Contig/Assembly ProteinBDH1D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo sapiens]. 1834e-46


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRdh1retinol dehydrogenase 1 (all trans) [Mus musculus]. 456e-128
Contig/Assembly ProteinRdh16retinol dehydrogenase 16 [Mus musculus]. 449e-126
Contig/Assembly ProteinRdh7retinol dehydrogenase 7 [Mus musculus]. 449e-126
Contig/Assembly ProteinRdh5retinol dehydrogenase 5 [Mus musculus]. 3211e-87


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC474409PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Canis familiaris]. 481e-136
Contig/Assembly ProteinLOC481118PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis familiaris]. 394e-109
Contig/Assembly ProteinHSD11B2PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris]. 1365e-32


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRDH16retinol dehydrogenase 16 [Bos taurus]. 507e-143
Contig/Assembly ProteinHSD17B617-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus]. 384e-106
Contig/Assembly ProteinSDR9C7short-chain dehydrogenase/reductase family 9C member 7 [Bos taurus]. 3464e-95
Contig/Assembly ProteinDHRS9dehydrogenase/reductase SDR family member 9 precursor [Bos taurus]. 3194e-87
Contig/Assembly ProteinDHRS7Bdehydrogenase/reductase SDR family member 7B [Bos taurus]. 89.77e-18


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinRDH16retinol dehydrogenase 16 (all-trans) [Sus scrofa]. 604e-173
Contig/Assembly ProteinLOC100626199PREDICTED: retinol dehydrogenase 16-like isoform 2 [Sus scrofa]. 515e-146
Contig/Assembly ProteinLOC100512656PREDICTED: retinol dehydrogenase 16-like [Sus scrofa]. 508e-144
Contig/Assembly ProteinLOC100519057PREDICTED: dehydrogenase/reductase SDR family member 9-like, partial [Sus scrofa]. 2563e-68


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-094534.1CAGAAACCAGGTTTTGTTTTGTCTTGAAACCATGCGTTTCCATGGATTAAATTTTCCTTA


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003053120030531C-00026718fwd
2003082620030826C-00027229fwd
2004020420040204C-00029920fwd
2005032220050322C-00031029fwd
2006061120060611C-00556730fwd
2007080620070806C-00045330fwd
2008051520080515C-00084330fwd
2010100120101001C-00652829fwd
2011060120110601C-01237429fwd