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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
LVRM1_0158_E11
Library: LVRM1 (Liver)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,641)
[FASTA format sequence]
GTTTCTGTCC CCCGCAAAGC CGTGTGGGTG TACCTGGCGG TCCTCGTGGG CCTGTACTAC
CTCCTGCGCT GGCAGCGGGA GGGGCAGGTG GTGAGCCACC TGAGGGACAA GTATGTCTTC
ATCACGGGCT GTGACTCGGG CTTCGGGAAC CTGCTGGCCA GGCAGCTGGA CCTGCGGGGC
TTGAGGGTCC TGGCTGCATG TCTGACGGAG CAGGGGGCCC AGCAGCTGAG GAAGCAGACG
TCAGACAGGC TGGAGACGGT GCTCCTGGAC GTGACCAAGA CAGAGAGCGT CGCTGCGGCC
AAGGAGTGGG TGAAGGAGCG TGTGGGGGAC AGAGGACTCT GGGGCCTGGT GAACAATGCT
GGCATCTCCG TAATCTCTGC TCCCAATGAG TGGCTGACCA AACAGGACTC CGTGAAGATA
TTGGATGTGA ACCTGTTGGG GATGGTCGAC GTGACCCTGC AGCTGCTGCC CCTCGTGAGG
AAGACCAGGG GCCGTGTGGT CAACGTCTCC AGTGTCATGG GCCGGGTGTC CCTCTTTGGC
GGCGGCTACT GCCTGTCCAA GTACGGTGTT GAGGCCTTCT CGGACTCCCT CAGGAGGGAG
CTCTCCTACT TTGGGGTGAA GGTGGCTATG ATTGAGCCCG GTTTCTTCAA GACCAATGTA
ACCAAACCTG AGGCAATTTC TCAGGGCTAC AAGACAGCAT GGAATCAGGC CAGCCCAGAG
ATCAAGGATC TCTATGGGGA CACATTCCTG GCCTTATGTG AGAAAGCAGT TTGCTCAATG
GAGACAAGTT GCAATCAGGA TCTCTCCTTG GTGACTGACT GCATGGAGCA CGCCCTGACC
TCCTGCCACC CCCGCACGCG ATACTCACCT GGCTGGGACG CCAAGCTCTT CTACCTCCCC
ATGAGCTACT TGCCCACCTT CCTCGTGGAT CTCATGATAT ACTATGGTGC CCCTAGGCCT
GCTAAGGCCC TGTAACCCAA ACTGGGGTAC ATGGTAGGGG GAGCTGGGTG TGTTAGGGAG
GGGAGGCATC CATGGGAGGG AAATATAGTG GGGAGAGGGC TTCTATGTCA CCAGGGACAC
CCATCCCACC TCCTCCCCAC ATCGTCCCCA GGCTTCTCTG GGGACATGAC TCAGGACTCT
GGGGATATTA GGATAAAGAA GCAAGTTTTG TGGTGAGGAG CTGGGACCAA TAGCTCATGT
CTGTGTCTTG TTTCTTACCA GCCTCTCAGG GCCCTGGACC TTAGGCCTTC CTGCCACTCT
GAACAATCCA CACTTTGGGG AGGGCGTGAG CAGCTGGGAG GACATCAGCC CCCACCCTCT
GTCCCAGTCT GCCTCTTCTG GGTGTGCCCT GGCCCTGGCC GTCTCTCCCT CCTGTGAGCT
AGAAATGGAC ATGGACGTGA AGGCCCATCT CCCCTGAAGG TTCCTGTGGG CAGGGGTGAG
GGTGGAGAGT GGCCACCAGC CTGACACAGC AGCCTGGGTG CCAGCTCAGG AGACCTTGGC
TGGAAGGCGG TGTTCTCAGT GGGGGTCCTG AGAGAGGACA CAGAAACCAG GTTTTGTTTT
GTCTTGAAAC CATGCGTTTC CATGGATTAA ATTTTCCTTA AAATAAACAT TGACAGTTGA
AAAAAAAAAA AAAAAAAAAA A
Deduced amino acid sequence: (length: 177) [FASTA format sequence]
MVDVTLQLLP LVRKTRGRVV NVSSVMGRVS LFGGGYCLSK YGVEAFSDSL RRELSYFGVK
VAMIEPGFFK TNVTKPEAIS QGYKTAWNQA SPEIKDLYGD TFLALCEKAV CSMETSCNQD
LSLVTDCMEH ALTSCHPRTR YSPGWDAKLF YLPMSYLPTF LVDLMIYYGA PRPAKAL
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
BLAST on RefSeq (Human): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| RDH16 | retinol dehydrogenase 16 [Homo sapiens]. | 466 | e-131 | |
|
| HSD17B6 | 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Homo sapiens]. | 396 | e-110 | |
|
| SDR9C7 | short-chain dehydrogenase/reductase family 9C member 7 [Homo sapiens]. | 332 | 8e-91 | |
|
| RDH5 | 11-cis retinol dehydrogenase [Homo sapiens]. | 316 | 4e-86 | |
|
| BDH1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo sapiens]. | 183 | 4e-46 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| Rdh1 | retinol dehydrogenase 1 (all trans) [Mus musculus]. | 456 | e-128 | |
|
| Rdh16 | retinol dehydrogenase 16 [Mus musculus]. | 449 | e-126 | |
|
| Rdh7 | retinol dehydrogenase 7 [Mus musculus]. | 449 | e-126 | |
|
| Rdh5 | retinol dehydrogenase 5 [Mus musculus]. | 321 | 1e-87 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LOC474409 | PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Canis familiaris]. | 481 | e-136 | |
|
| LOC481118 | PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis familiaris]. | 394 | e-109 | |
|
| HSD11B2 | PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris]. | 136 | 5e-32 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| RDH16 | retinol dehydrogenase 16 [Bos taurus]. | 507 | e-143 | |
|
| HSD17B6 | 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus]. | 384 | e-106 | |
|
| SDR9C7 | short-chain dehydrogenase/reductase family 9C member 7 [Bos taurus]. | 346 | 4e-95 | |
|
| DHRS9 | dehydrogenase/reductase SDR family member 9 precursor [Bos taurus]. | 319 | 4e-87 | |
|
| DHRS7B | dehydrogenase/reductase SDR family member 7B [Bos taurus]. | 89.7 | 7e-18 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| RDH16 | retinol dehydrogenase 16 (all-trans) [Sus scrofa]. | 604 | e-173 | |
|
| LOC100626199 | PREDICTED: retinol dehydrogenase 16-like isoform 2 [Sus scrofa]. | 515 | e-146 | |
|
| LOC100512656 | PREDICTED: retinol dehydrogenase 16-like [Sus scrofa]. | 508 | e-144 | |
|
| LOC100519057 | PREDICTED: dehydrogenase/reductase SDR family member 9-like, partial [Sus scrofa]. | 256 | 3e-68 | |
Oligo-microarray probe: TOP
Probe ID | Rel. | Probe sequence |
---|
AGPOA4-09453 | 4.1 | CAGAAACCAGGTTTTGTTTTGTCTTGAAACCATGCGTTTCCATGGATTAAATTTTCCTTA |
Assembly member: TOP