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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  LVRM1_0191_E07

Library: LVRM1 (Liver)
Individual: M1, Meishan (Chinese)

Nucleotide sequence:   (length: 1,715)  [FASTA format sequence]
CATTTCTAAT CCTTTGGAGA ACAGAGAAGT AAAATTCAAA GGCAGTTAAA TCAGAAGTGT
TTGAAATCTG ACATCTACTC CCAAACAAGC ATTTCTCAGG GCTGCACCCA TGGCATATGG
AGGTTCCCAG GCTAGGGGTC TAATCAGAGC TGTAGCCGCT GGCCTACGCC AGGCCCACAG
CAACTCAGGA TCCAAGCCTC AATTCAACCT ACATCACAGC TGACAGCAAC ACTGGATCCT
TAACCCACTG AGAAAGGCCA GGGATTGAAC CCACAACCTC ATGGTTCCTA GTCGGATTCG
TTAACCACTG CACCACA
ATG GGAACTCTAA GTGTCCTTTC TCATGTTCAA GATGAGGACA
TAGGAGGCCC CCATACCATG TGGCTGTACC TGGCTGTCCT CGTGGGCCTG TACTACCTCC
TTCGCTGGTA CCGGGAAAGG CAGATGGTTA GCCACCTTGG GGATAAGTAT GTCTTCATCA
CGGGCTGTGA CTCGGGCTTT GGGAACCTGC TGGCGAGGCA GCTGGATGTG AGGGGCTTGA
GGGTCCTGGC TGCATGTCTG ACGGAGCAGG GGGCCCAGCA GCTGAGGAAG CAGACGTCAG
ACAGGCTGGA GACGGTGCTC TTGGACGTGA CCAAGACAGA GAGCATTGCT GCGGCCACCC
AGTGGGTGAA GGAGCGTGTC GGGGACAGAG GACTCTGGGG TCTGGTCAAC AATGCAGGCA
CTTTTCACCC ACTGTGCATC ACTGAGTGGC TGAAGACTGA GACCTGGATA CATACCCTCA
AAGTGAACCT CATTGGTGTG ACAGAGGTGA CCTTGAGCAT GCTTCCCTTG GTGAAGAAAG
CACAGGGGAG AATTGTCAAT GTCTCCAGCA TTCTGGGAAG AGTTGCTTTC TTTGGAGCAG
TCTACTCTAG CTCCAAGCAT GGAGTGGAAG CCTTTTCAGA TGTCCTGAGA TGTGAGCTTC
AGCATTTTGG GGTGAAAGTC AGCATAGTTG AACCTGGTTA CTTCAGAACA GGAATGACAG
ATGTGCAGAA GTCCTCAGAG GCAATGAAGC AAGTCTGGAA AGAAGTCCCT GCTCATATTA
AGGACACCTA TGGACAGAAG TTTTTTGATG CCTATCACGA TGTTATGAAA CAAGGGCTGT
CTAGTTGTAG CACAAACCTG AACCTGGTCA CGGACTGCAT GGAACACGCT CTGACATCTG
TGCATCCCCG CACTCGGTAC TCAGCTGGCT GGGATGCTCA ATTTTTCTTC ATCCCTCTGT
CTTATTTACC TACATCACTG GCAGACTACA TACTGACTAG ATCTTGGCCC AAACCAGTGC
AGGCAGTCTA AAGAAAATTA TTTTGGTGGC TCTTCAAACG AAGAAGACAA AAATCTGAAA
TTGTTAGTGT CTCAGTAATC TTTATGTCTA ATCCATACTT TTTATAACAA CAAGCTTTCT
TGCCTAAACT CACTTATCTG GCACTATCTG AGAACCAATA TCTTTATATT CCGTATATTA
TCCAAAGCTT ACTCCTTTAG GTGATGAAAG GTTACTATTT TAAACCATTT TTTGATGACA
GTTTATTTCC AAAATTCATC AGTCTTTCTT GCTTGCCCTA TTAAACAGAG TAGACAGAAA
ACAACTGAAC TTTTTTGGAT GCTCTTTCTT TATGTAAATA AATAGCTGTT CTGTGCTGTG
ATAAACTACT GCTCAAGGAA AAAAAAAAAA GAAAA

Deduced amino acid sequence:  (length: 337) [FASTA format sequence]
MGTLSVLSHV QDEDIGGPHT MWLYLAVLVG LYYLLRWYRE RQMVSHLGDK YVFITGCDSG
FGNLLARQLD VRGLRVLAAC LTEQGAQQLR KQTSDRLETV LLDVTKTESI AAATQWVKER
VGDRGLWGLV NNAGTFHPLC ITEWLKTETW IHTLKVNLIG VTEVTLSMLP LVKKAQGRIV
NVSSILGRVA FFGAVYSSSK HGVEAFSDVL RCELQHFGVK VSIVEPGYFR TGMTDVQKSS
EAMKQVWKEV PAHIKDTYGQ KFFDAYHDVM KQGLSSCSTN LNLVTDCMEH ALTSVHPRTR
YSAGWDAQFF FIPLSYLPTS LADYILTRSW PKPVQAV


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHSD17B617-beta-hydroxysteroid dehydrogenase type 6 precursor [Homo sapiens]. 500e-141O
Contig/Assembly ProteinRDH16retinol dehydrogenase 16 [Homo sapiens]. 377e-104
Contig/Assembly ProteinSDR9C7short-chain dehydrogenase/reductase family 9C member 7 [Homo sapiens]. 3187e-87
Contig/Assembly ProteinDHRS9dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens]. 2972e-80O
Contig/Assembly ProteinBDH1D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo sapiens]. 1904e-48


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHsd17b617-beta-hydroxysteroid dehydrogenase type 6 [Mus musculus]. 445e-125O
Contig/Assembly ProteinRdh7retinol dehydrogenase 7 [Mus musculus]. 392e-109
Contig/Assembly ProteinRdh1retinol dehydrogenase 1 (all trans) [Mus musculus]. 392e-109
Contig/Assembly ProteinDhrs9dehydrogenase/reductase SDR family member 9 precursor [Mus musculus]. 3034e-82


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC481118PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis familiaris]. 513e-145O
Contig/Assembly ProteinLOC474409PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Canis familiaris]. 394e-109O
Contig/Assembly ProteinHSD11B2PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris]. 1473e-35


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHSD17B617-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus]. 531e-151O
Contig/Assembly ProteinRDH16retinol dehydrogenase 16 [Bos taurus]. 386e-107O
Contig/Assembly ProteinSDR9C7short-chain dehydrogenase/reductase family 9C member 7 [Bos taurus]. 3294e-90
Contig/Assembly ProteinDHRS9dehydrogenase/reductase SDR family member 9 precursor [Bos taurus]. 3072e-83
Contig/Assembly ProteinDHRS7Bdehydrogenase/reductase SDR family member 7B [Bos taurus]. 84.33e-16


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100620470PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform 2 [Sus scrofa]. 6490.0
Contig/Assembly ProteinRDH16retinol dehydrogenase 16 (all-trans) [Sus scrofa]. 396e-110
Contig/Assembly ProteinLOC100512656PREDICTED: retinol dehydrogenase 16-like [Sus scrofa]. 394e-110
Contig/Assembly ProteinLOC100519057PREDICTED: dehydrogenase/reductase SDR family member 9-like, partial [Sus scrofa]. 2432e-64


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-078764.1ACTACATACTGACTAGATCTTGGCCCAAACCAGTGCAGGCAGTCTAAAGAAAATTATTTT


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003082620030826C-0056992fwd
2004020420040204C-0034572fwd
2005032220050322C-0087642fwd
2006061120060611C-0090962fwd
2007080620070806C-0124462fwd
2010100120101001S-0651691fwd
2011060120110601S-0707321fwd