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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
LVRM1_0191_E07
Library: LVRM1 (Liver)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,715)
[FASTA format sequence]
CATTTCTAAT CCTTTGGAGA ACAGAGAAGT AAAATTCAAA GGCAGTTAAA TCAGAAGTGT
TTGAAATCTG ACATCTACTC CCAAACAAGC ATTTCTCAGG GCTGCACCCA TGGCATATGG
AGGTTCCCAG GCTAGGGGTC TAATCAGAGC TGTAGCCGCT GGCCTACGCC AGGCCCACAG
CAACTCAGGA TCCAAGCCTC AATTCAACCT ACATCACAGC TGACAGCAAC ACTGGATCCT
TAACCCACTG AGAAAGGCCA GGGATTGAAC CCACAACCTC ATGGTTCCTA GTCGGATTCG
TTAACCACTG CACCACAATG GGAACTCTAA GTGTCCTTTC TCATGTTCAA GATGAGGACA
TAGGAGGCCC CCATACCATG TGGCTGTACC TGGCTGTCCT CGTGGGCCTG TACTACCTCC
TTCGCTGGTA CCGGGAAAGG CAGATGGTTA GCCACCTTGG GGATAAGTAT GTCTTCATCA
CGGGCTGTGA CTCGGGCTTT GGGAACCTGC TGGCGAGGCA GCTGGATGTG AGGGGCTTGA
GGGTCCTGGC TGCATGTCTG ACGGAGCAGG GGGCCCAGCA GCTGAGGAAG CAGACGTCAG
ACAGGCTGGA GACGGTGCTC TTGGACGTGA CCAAGACAGA GAGCATTGCT GCGGCCACCC
AGTGGGTGAA GGAGCGTGTC GGGGACAGAG GACTCTGGGG TCTGGTCAAC AATGCAGGCA
CTTTTCACCC ACTGTGCATC ACTGAGTGGC TGAAGACTGA GACCTGGATA CATACCCTCA
AAGTGAACCT CATTGGTGTG ACAGAGGTGA CCTTGAGCAT GCTTCCCTTG GTGAAGAAAG
CACAGGGGAG AATTGTCAAT GTCTCCAGCA TTCTGGGAAG AGTTGCTTTC TTTGGAGCAG
TCTACTCTAG CTCCAAGCAT GGAGTGGAAG CCTTTTCAGA TGTCCTGAGA TGTGAGCTTC
AGCATTTTGG GGTGAAAGTC AGCATAGTTG AACCTGGTTA CTTCAGAACA GGAATGACAG
ATGTGCAGAA GTCCTCAGAG GCAATGAAGC AAGTCTGGAA AGAAGTCCCT GCTCATATTA
AGGACACCTA TGGACAGAAG TTTTTTGATG CCTATCACGA TGTTATGAAA CAAGGGCTGT
CTAGTTGTAG CACAAACCTG AACCTGGTCA CGGACTGCAT GGAACACGCT CTGACATCTG
TGCATCCCCG CACTCGGTAC TCAGCTGGCT GGGATGCTCA ATTTTTCTTC ATCCCTCTGT
CTTATTTACC TACATCACTG GCAGACTACA TACTGACTAG ATCTTGGCCC AAACCAGTGC
AGGCAGTCTA AAGAAAATTA TTTTGGTGGC TCTTCAAACG AAGAAGACAA AAATCTGAAA
TTGTTAGTGT CTCAGTAATC TTTATGTCTA ATCCATACTT TTTATAACAA CAAGCTTTCT
TGCCTAAACT CACTTATCTG GCACTATCTG AGAACCAATA TCTTTATATT CCGTATATTA
TCCAAAGCTT ACTCCTTTAG GTGATGAAAG GTTACTATTT TAAACCATTT TTTGATGACA
GTTTATTTCC AAAATTCATC AGTCTTTCTT GCTTGCCCTA TTAAACAGAG TAGACAGAAA
ACAACTGAAC TTTTTTGGAT GCTCTTTCTT TATGTAAATA AATAGCTGTT CTGTGCTGTG
ATAAACTACT GCTCAAGGAA AAAAAAAAAA GAAAA
Deduced amino acid sequence: (length: 337) [FASTA format sequence]
MGTLSVLSHV QDEDIGGPHT MWLYLAVLVG LYYLLRWYRE RQMVSHLGDK YVFITGCDSG
FGNLLARQLD VRGLRVLAAC LTEQGAQQLR KQTSDRLETV LLDVTKTESI AAATQWVKER
VGDRGLWGLV NNAGTFHPLC ITEWLKTETW IHTLKVNLIG VTEVTLSMLP LVKKAQGRIV
NVSSILGRVA FFGAVYSSSK HGVEAFSDVL RCELQHFGVK VSIVEPGYFR TGMTDVQKSS
EAMKQVWKEV PAHIKDTYGQ KFFDAYHDVM KQGLSSCSTN LNLVTDCMEH ALTSVHPRTR
YSAGWDAQFF FIPLSYLPTS LADYILTRSW PKPVQAV
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
BLAST on RefSeq (Human): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| HSD17B6 | 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Homo sapiens]. | 500 | e-141 | O |
|
| RDH16 | retinol dehydrogenase 16 [Homo sapiens]. | 377 | e-104 | |
|
| SDR9C7 | short-chain dehydrogenase/reductase family 9C member 7 [Homo sapiens]. | 318 | 7e-87 | |
|
| DHRS9 | dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens]. | 297 | 2e-80 | O |
|
| BDH1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo sapiens]. | 190 | 4e-48 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| Hsd17b6 | 17-beta-hydroxysteroid dehydrogenase type 6 [Mus musculus]. | 445 | e-125 | O |
|
| Rdh7 | retinol dehydrogenase 7 [Mus musculus]. | 392 | e-109 | |
|
| Rdh1 | retinol dehydrogenase 1 (all trans) [Mus musculus]. | 392 | e-109 | |
|
| Dhrs9 | dehydrogenase/reductase SDR family member 9 precursor [Mus musculus]. | 303 | 4e-82 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LOC481118 | PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis familiaris]. | 513 | e-145 | O |
|
| LOC474409 | PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Canis familiaris]. | 394 | e-109 | O |
|
| HSD11B2 | PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris]. | 147 | 3e-35 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| HSD17B6 | 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus]. | 531 | e-151 | O |
|
| RDH16 | retinol dehydrogenase 16 [Bos taurus]. | 386 | e-107 | O |
|
| SDR9C7 | short-chain dehydrogenase/reductase family 9C member 7 [Bos taurus]. | 329 | 4e-90 | |
|
| DHRS9 | dehydrogenase/reductase SDR family member 9 precursor [Bos taurus]. | 307 | 2e-83 | |
|
| DHRS7B | dehydrogenase/reductase SDR family member 7B [Bos taurus]. | 84.3 | 3e-16 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LOC100620470 | PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform 2 [Sus scrofa]. | 649 | 0.0 | |
|
| RDH16 | retinol dehydrogenase 16 (all-trans) [Sus scrofa]. | 396 | e-110 | |
|
| LOC100512656 | PREDICTED: retinol dehydrogenase 16-like [Sus scrofa]. | 394 | e-110 | |
|
| LOC100519057 | PREDICTED: dehydrogenase/reductase SDR family member 9-like, partial [Sus scrofa]. | 243 | 2e-64 | |
Oligo-microarray probe: TOP
Probe ID | Rel. | Probe sequence |
---|
AGPOA4-07876 | 4.1 | ACTACATACTGACTAGATCTTGGCCCAAACCAGTGCAGGCAGTCTAAAGAAAATTATTTT |
Assembly member: TOP