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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
MLN01_0005_E06
Library: MLN01 (Mesenteric lymph nodes)
Individual: LWD2, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,147)
[FASTA format sequence]
GACTGGACAG TACCCATTTG AGTGGGACTT GCCTGCTCCC CTCACACACT GTCCTCTCCT
GTTCTCCAGC ATGTTGCATC TGTGTTTCTC CAGAGGCTTC TGGATGGCAG CTCTGACCAT
GATGCTGGTG GTGCTGAGCC CTCCCTTGGC TTTGGCCAGG GACACCCCAC CGCATTTCTT
GTTTCTGGGG AAGGCTGAGT GTCATTTCTT CAACGGGACG GAGCGGGTGC GGTTGCTGGA
CAGATACTTC TATAACGGAG ATGAGTACGT GCGCTTCGAC AGCGACGTGG GCGAGTTCCG
GGAAGTGACC GAATTTGGGC GGCCTTCAGC CAAGTACTGG AACAGCCAGA AGGACTTCAT
GGAGCAGAAG CGGGCGGAGG TGGACACGGT GTGCAGACAC AACTACGAGA TCTCAGAGAC
CTTCCTCGTG CCGCGGCGAG CTGAGCCCAG AGTGACGGTG TACCCTGCAA AGACCCAGCC
CCTGCAGCAC CACAACCTCC TGGTCTGCTC TGTGACCGGG TTCTACCCAG GCCATGTGGA
GACCATGGTG ATGCTTGAAA CGGTTCCTCA GAGTGGAGAG GTCTACACCT GCCGAGTGGA
GCACCCCAGC CTGACGAGCC CCGTACAGTG GAATGGAGGG CACGGTCTGA ATCTGCTCAG
GGCAAGATGA TGAGTGGGAT CGGGGGCTTC GTCCTGGGTC TGCTCTTTGT TGCTGTGGGG
CTGTTCATCT ACTTCAAGAA TCAGAAAGGA CGCCCTGCCC TTCAGCCAAC AGGCCTCCTG
AGCTGAAGTG CAGATGGTGA CACTCCAAGC AAGCATCCTC TGTGCCAGCG TCTTCACAGC
ATGAGAAGGC TCCTGCTATG CTCTGCGTCC TCCCCCAGGA GAGCTCTTCC TCAGACTCTC
CTCTGCTCCT GGTTCAGGGA CCCTGCAGAA AACGTCTTTT GATGGCTTTC TCAACCTCCC
CCCTTTGACC TGGAAGTTCC TGGCATTGAT TGCTATGCCT ATGTTCATTT TTCTTTTTTT
TTTTTCTGGT TGGTCCCTGT TGTTTTCGAC GTTACTGCCT CCTGTGCATC TGAACTCATC
CACTGCCCAT ATTACCTTAT TATGTTTTTC TCCAATAAAT ATGGAGTGAC AAAAAAAAAA
AAAAAAA
Deduced amino acid sequence: (length: 199) [FASTA format sequence]
MLHLCFSRGF WMAALTMMLV VLSPPLALAR DTPPHFLFLG KAECHFFNGT ERVRLLDRYF
YNGDEYVRFD SDVGEFREVT EFGRPSAKYW NSQKDFMEQK RAEVDTVCRH NYEISETFLV
PRRAEPRVTV YPAKTQPLQH HNLLVCSVTG FYPGHVETMV MLETVPQSGE VYTCRVEHPS
LTSPVQWNGG HGLNLLRAR
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | HLA-DRB1 | major histocompatibility complex, class II, DR beta 1 precursor [Homo sapiens]. | 265 | 5e-71 | O |
|
| LOC100507714 | PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 2 [Homo sapiens]. | 259 | 4e-69 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| H2-Eb1 | H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. | 263 | 1e-70 | O |
|
| H2-Eb2 | histocompatibility 2, class II antigen E beta2 [Mus musculus]. | 212 | 1e-59 | |
|
| H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]. | 191 | 9e-49 | |
|
| H2-Ob | histocompatibility 2, O region beta locus [Mus musculus]. | 175 | 4e-45 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| HLA-DRB1 | DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris]. | 266 | 1e-83 | O |
|
| HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. | 240 | 3e-70 | O |
|
| HLA-DOB | major histocompatibility complex, class II, DO beta [Canis lupus familiaris]. | 194 | 7e-52 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| BoLA-DRB3 | major histocompatibility complex, class II, DRB3 [Bos taurus]. | 283 | 2e-76 | O |
|
| LOC786695 | PREDICTED: major histocompatibility complex, class II, DR beta 3-like [Bos taurus]. | 274 | 1e-73 | |
|
| BOLA-DRB2 | PREDICTED: histocompatibility complex, class II, DR beta 2 [Bos taurus]. | 238 | 1e-62 | |
|
| BOLA-DOB | major histocompatibility complex, class II, DO beta [Bos taurus]. | 173 | 3e-45 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| SLA-DRB1 | MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa]. | 330 | e-107 | |
|
| LOC100513292 | PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. | 262 | 3e-70 | |
|
| LOC100519552 | PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. | 251 | 1e-75 | |
|
| SLA-DQB1 | SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa]. | 219 | 5e-62 | |
|
| LOC100520439 | PREDICTED: HLA class II histocompatibility antigen, DO beta chain-like [Sus scrofa]. | 182 | 1e-48 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-05192 | 4.1 | TGAACTCATCCACTGCCCATATTACCTTATTATGTTTTTCTCCAATAAATATGGAGTGAC |
Assembly member: TOP