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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  MLN01_0050_C02

Library: MLN01 (Mesenteric lymph nodes)
Individual: LWD2, Crossbred pig ((Landrace x Large White) x Duroc, Western)

Nucleotide sequence:   (length: 1,391)  [FASTA format sequence]
TTTGGTTTGG CCAAAAAGTA CAGAGACAAC AGGACAAGGC AACACATACC ATACAGAGAA
GATAAAAATC TCACTGGCAC TGCCCGATAC GCTAGCATCA ATGCACATCT TGGTATTGAA
CAGAGTCGCC GAGATGAC
AT GGAATCATTA GGATATGTTT TGATGTATTT TAATAGAACC
AGTCTGCCAT GGCAAGGACT CAAGGCTGCA ACAAAGAAGC AGAAATATGA AAAAATTAGC
GAAAAGAAGA TGTCCACACC TGTGGAAGTT TTGTGTAAGG GGTTTCCTGC AGAATTTGCC
ATGTACTTAA ACTATTGTCG TGGGCTGCGC TTTGAGGAAG CCCCGGATTA CATGTACCTG
AGACAGCTAT TCCGCATTCT TTTCAGGACC CTGAATCACC AATATGACTA CACATTTGAC
TGGACAATGT TAAAGCAGAA AGCAGCACAG CAAGCAGCCT CTTCAAGTGG GCAGGGTCAG
CAGGCCCAAA CCCCCACAGG TTTCTAAGCA TGAATCGAGG AACAGAAGCA GCAGAGCAGA
TGATCGGAGC AGCATTTGTT TCTCCCCAAA TCTAGACATT TTAGTTCATA TGTACACTAG
CCAGTGGCTG TGGACAACCA TTTCCTTGGT GTAAAGAACT TCATTTCGGT ATAAACTGGC
TCTGGGCAGC GCTGGCGATA CTGCGTCCCG AGTTGTAGCC GCTGTAATTG TGAATATTAA
CTGAGATAGT GAGACATGGT GTCCAGTTTT CTATTGCATT TTTTCAAGTG GAAAAGTTAA
CTGAGTGGTT GACACACACA AATTGGTGGA CGGATTGTGC ATATGCCAAT TGTTTTGTTG
AAACCTTTTC TTTTGAACTA TACTGCTTTG AGATCTCACT TCAGAAGAAC GGCATGAACA
GTCTTCAGCC GCAGTTGTGA TGGTTGTAAA TGCTCGCAGC TGTGCGTTCT TAGGGTTTCT
TCATCCCTGG GGTTTGCAAG TTGTTCACTT AAAACATTCT TAACATGGTT GGCTTCTTGT
GTGCAAGCCA GCTGATATGG TAGCAACCAA AGATTCCAGT GTTTGAGCAT ATGAAAGACT
CTGCCTGCTT ACCTGTGCTA GAAATAACAG CATCTAAAGT GAAGACTTAA GAAAAACTTA
GTGACTACTA GATTATCCGT AGGACTCTGC ATTAACTCTA TAATGTTCTT GGTATTAAAA
AAAGCATATT TGTCACAGAA ATTTAGTTAA CATCTTACAA CTGAACATGT GTGTATGTTG
CTTAGATAAA TGTAATCACT GTAAACATCT ATATGATCTG GGATTTTGTT TTTATTTTGA
AATGGGAGCT CTTTTTTGTT TACAAGTTCA TTAAAAACTA AAAACTGTTT CTGTAAAAAA
AAAAAAAAAA A

Deduced amino acid sequence:  (length: 122) [FASTA format sequence]
MESLGYVLMY FNRTSLPWQG LKAATKKQKY EKISEKKMST PVEVLCKGFP AEFAMYLNYC
RGLRFEEAPD YMYLRQLFRI LFRTLNHQYD YTFDWTMLKQ KAAQQAASSS GQGQQAQTPT
GF


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCSNK1A1casein kinase I isoform alpha isoform 1 [Homo sapiens]. 2764e-74
Contig/Assembly ProteinCSNK1A1Lcasein kinase I isoform alpha-like [Homo sapiens]. 2625e-70
Contig/Assembly ProteinCSNK1Dcasein kinase I isoform delta isoform 2 [Homo sapiens]. 2233e-58
Contig/Assembly ProteinCSNK1G3casein kinase I isoform gamma-3 isoform 4 [Homo sapiens]. 1664e-41


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCsnk1a1casein kinase I isoform alpha [Mus musculus]. 2787e-75
Contig/Assembly ProteinCsnk1dcasein kinase I isoform delta isoform 1 [Mus musculus]. 2233e-58
Contig/Assembly ProteinCsnk1ecasein kinase I isoform epsilon [Mus musculus]. 2226e-58
Contig/Assembly ProteinTtbk2tau-tubulin kinase 2 isoform 2 [Mus musculus]. 66.64e-11


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC479331PREDICTED: similar to casein kinase 1, alpha 1 isoform 15 [Canis familiaris]. 2789e-75


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCSNK1A1casein kinase I isoform alpha [Bos taurus]. 2788e-75
Contig/Assembly ProteinLOC100300748PREDICTED: casein kinase I alpha-like [Bos taurus]. 2694e-72
Contig/Assembly ProteinLOC613515PREDICTED: casein kinase I-like [Bos taurus]. 2358e-62
Contig/Assembly ProteinCSNK1G1casein kinase I isoform gamma-1 [Bos taurus]. 1711e-42


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCSNK1A1PREDICTED: casein kinase I isoform alpha [Sus scrofa]. 2763e-74
Contig/Assembly ProteinCSNK1EPREDICTED: casein kinase I isoform epsilon isoform 2 [Sus scrofa]. 2224e-58
Contig/Assembly ProteinTTBK2PREDICTED: tau-tubulin kinase 2 [Sus scrofa]. 67.42e-11


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-100924.1CTTAGTGACTACTAGATTATCCGTAGGACTCTGCATTAACTCTATAATGTTCTTGGTATT


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003082620030826C-0052363fwd
2004020420040204C-0055343fwd
2005032220050322C-00545618fwd
2006061120060611C-00097020fwd
2007080620070806C-00110521fwd
2008051520080515C-0051495fwd
2010100120101001C-00220034fwd
2011060120110601C-00260935fwd