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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
MLN01_0060_E10
Library: MLN01 (Mesenteric lymph nodes)
Individual: LWD2, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,214)
[FASTA format sequence]
CTGAGTGGGA GCTGTGTTGA CTACCATTAC TTCTTCGTTT GTCCTCAATT ATGTCTGGGA
TGGTGGCTCT GCGGCTCCCC AGAGGCCTTT GGACAGCGGC CGTGACGGTG ATGCTGGTGG
TGCTGGGTGC TCCGGTGGCT GAGGGCAGAG ACTCTCCACA GGATTTCGTG TACCAGTTTA
AGTTCGAGTG CTACTTCTAC AACGGAACGC AGCGGGTGCG GCTCGTGGCC AGGTGGGTCT
ACAACCGGGA GGAGCACGTG CGCTTCGACA GCGACGTGGG GGAGTTCCGG GCGGTGACCC
CGCTGGGGCG GCCGGACGCC GACTACTGGA ACGGCCAGAA GGAGGTCCTG GAGCAGAAGC
GGGCCGAGCT GGACACGGTG TGTAAACACA ACTACCAGAT AGAGGAAGGC ACGACCCTGC
AGCGGCGAGT GCAACCTACA GTGACTATCT CCCCATCCAA GGCAGAGGCT CTAAACCACC
ACAACCTGCT GGTCTGTGCG GTGACAGATT TCTATCCAAG CCAGGTGAAA GTCCAGTGGT
TCCGGAATGG CCAGGAGGAG ACAGCTGGCG TTGTGTCCAC TCCTCTTATT AGGAACGGAG
ACTGGACCTA CCAGGTGCTC GTGATGCTAG AGATGAATCT CCAGCGAGGA GATGTCTACA
CCTGCCGCGT GGAGCACTCC AGCCTCCAGA GCCCCATCTT GGTGGAGTGG CGGGCACAGT
CTGAATCTGC CCAGAGCAAG ATGCTGAGCG GTGTCGGGGG CTTCGTGCTG GGGCTGATCT
TCCTCGGGCT GGGCCTTTTC ATCCGTCACA GGAGTCAGAA GGGGCTCGTG CGCTGAATCC
TGAAGATACT TTGGGGTTGG TTTTTGCTCT TCTTAAATGT CTGTCTGTTC TTGCCTGGAA
TTCCCATCCC CCCTGCCAGC TTGTCCTCTC TGAGGTCAGA TCCTACAGTG ACTCTGATGC
AGTCACCAGG GCGCTTCCTG TGATCCCCAC CTCAAGGCTC TGGCTGTGAA GCTTCTTCCT
GAACTGACCC CAGCGCCTCT GCCTGAGCGC AGCCAGCTGT GTCTACTCAG ACCACAAGGG
ATTTTCCTGT TCCTATTTCC CCTCAACAGA CTGTGCAAGA GAAGCACATT GAAACCATTT
AACTGGCTAT AGAGTGCTTT TTTAAAAATC ATAATTAAAC ATGATTATGA GTTAAAAAAA
AAAAAAAAAA AAAA
Deduced amino acid sequence: (length: 261) [FASTA format sequence]
MSGMVALRLP RGLWTAAVTV MLVVLGAPVA EGRDSPQDFV YQFKFECYFY NGTQRVRLVA
RWVYNREEHV RFDSDVGEFR AVTPLGRPDA DYWNGQKEVL EQKRAELDTV CKHNYQIEEG
TTLQRRVQPT VTISPSKAEA LNHHNLLVCA VTDFYPSQVK VQWFRNGQEE TAGVVSTPLI
RNGDWTYQVL VMLEMNLQRG DVYTCRVEHS SLQSPILVEW RAQSESAQSK MLSGVGGFVL
GLIFLGLGLF IRHRSQKGLV R
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
BLAST on RefSeq (Human): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LOC100293977 | PREDICTED: HLA class II histocompatibility antigen, DQ beta 1 chain-like isoform 2 [Homo sapiens]. | 382 | e-106 | |
|
| HLA-DQB1 | HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]. | 380 | e-105 | |
|
| LOC100507714 | PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 1 [Homo sapiens]. | 299 | 3e-81 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]. | 330 | 1e-90 | O |
|
| H2-Eb1 | H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. | 301 | 7e-82 | |
|
| H2-Eb2 | histocompatibility 2, class II antigen E beta2 [Mus musculus]. | 255 | 6e-68 | |
|
| H2-Ob | histocompatibility 2, O region beta locus [Mus musculus]. | 244 | 1e-64 | |
|
| H2-Q6 | histocompatibility 2, Q region locus 6 [Mus musculus]. | 62.8 | 5e-10 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. | 388 | e-108 | O |
|
| HLA-DRB1 | DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris]. | 310 | 2e-84 | |
|
| HLA-DOB | major histocompatibility complex, class II, DO beta [Canis lupus familiaris]. | 268 | 8e-72 | O |
|
| LOC607827 | PREDICTED: similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) [Canis familiaris]. | 74.7 | 2e-13 | O |
|
| DLA-79 | PREDICTED: MHC class Ib [Canis familiaris]. | 59.3 | 7e-09 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LA-DQB | MHC cell surface glycoprotein [Bos taurus]. | 392 | e-109 | |
|
| BLA-DQB | boLa class II histocompatibility antigen, DQB*0101 beta chain precursor [Bos taurus]. | 386 | e-107 | |
|
| BOLA-DQB | major histocompatibility complex, class II, DQ beta [Bos taurus]. | 371 | e-103 | |
|
| BOLA-DYB | major histocompatibility complex, class II, DY beta [Bos taurus]. | 296 | 2e-80 | |
|
| DSB | MHC class II antigen DS beta [Bos taurus]. | 255 | 5e-68 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| SLA-DQB1 | SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa]. | 459 | e-129 | |
|
| SLA-DRB1 | MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa]. | 311 | 6e-85 | |
|
| LOC100513292 | PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. | 288 | 4e-78 | |
|
| LOC100519552 | PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. | 288 | 6e-78 | |
|
| SLA-DRA | MHC class II DR-alpha [Sus scrofa]. | 68.2 | 9e-12 | |
Oligo-microarray probe: TOP
Probe ID | Rel. | Probe sequence |
---|
AGPOA4-06160 | 4.1 | CTGTGCAAGAGAAGCACATTGAAACCATTTAACTGGCTATAGAGTGCTTTTTTAAAAATC |
Assembly member: TOP