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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  MLN01_0060_E10

Library: MLN01 (Mesenteric lymph nodes)
Individual: LWD2, Crossbred pig ((Landrace x Large White) x Duroc, Western)

Nucleotide sequence:   (length: 1,214)  [FASTA format sequence]
CTGAGTGGGA GCTGTGTTGA CTACCATTAC TTCTTCGTTT GTCCTCAATT ATGTCTGGGA
TGGTGGCTCT GCGGCTCCCC AGAGGCCTTT GGACAGCGGC CGTGACGGTG ATGCTGGTGG
TGCTGGGTGC TCCGGTGGCT GAGGGCAGAG ACTCTCCACA GGATTTCGTG TACCAGTTTA
AGTTCGAGTG CTACTTCTAC AACGGAACGC AGCGGGTGCG GCTCGTGGCC AGGTGGGTCT
ACAACCGGGA GGAGCACGTG CGCTTCGACA GCGACGTGGG GGAGTTCCGG GCGGTGACCC
CGCTGGGGCG GCCGGACGCC GACTACTGGA ACGGCCAGAA GGAGGTCCTG GAGCAGAAGC
GGGCCGAGCT GGACACGGTG TGTAAACACA ACTACCAGAT AGAGGAAGGC ACGACCCTGC
AGCGGCGAGT GCAACCTACA GTGACTATCT CCCCATCCAA GGCAGAGGCT CTAAACCACC
ACAACCTGCT GGTCTGTGCG GTGACAGATT TCTATCCAAG CCAGGTGAAA GTCCAGTGGT
TCCGGAATGG CCAGGAGGAG ACAGCTGGCG TTGTGTCCAC TCCTCTTATT AGGAACGGAG
ACTGGACCTA CCAGGTGCTC GTGATGCTAG AGATGAATCT CCAGCGAGGA GATGTCTACA
CCTGCCGCGT GGAGCACTCC AGCCTCCAGA GCCCCATCTT GGTGGAGTGG CGGGCACAGT
CTGAATCTGC CCAGAGCAAG ATGCTGAGCG GTGTCGGGGG CTTCGTGCTG GGGCTGATCT
TCCTCGGGCT GGGCCTTTTC ATCCGTCACA GGAGTCAGAA GGGGCTCGTG CGCTGAATCC
TGAAGATACT TTGGGGTTGG TTTTTGCTCT TCTTAAATGT CTGTCTGTTC TTGCCTGGAA
TTCCCATCCC CCCTGCCAGC TTGTCCTCTC TGAGGTCAGA TCCTACAGTG ACTCTGATGC
AGTCACCAGG GCGCTTCCTG TGATCCCCAC CTCAAGGCTC TGGCTGTGAA GCTTCTTCCT
GAACTGACCC CAGCGCCTCT GCCTGAGCGC AGCCAGCTGT GTCTACTCAG ACCACAAGGG
ATTTTCCTGT TCCTATTTCC CCTCAACAGA CTGTGCAAGA GAAGCACATT GAAACCATTT
AACTGGCTAT AGAGTGCTTT TTTAAAAATC ATAATTAAAC ATGATTATGA GTTAAAAAAA
AAAAAAAAAA AAAA

Deduced amino acid sequence:  (length: 261) [FASTA format sequence]
MSGMVALRLP RGLWTAAVTV MLVVLGAPVA EGRDSPQDFV YQFKFECYFY NGTQRVRLVA
RWVYNREEHV RFDSDVGEFR AVTPLGRPDA DYWNGQKEVL EQKRAELDTV CKHNYQIEEG
TTLQRRVQPT VTISPSKAEA LNHHNLLVCA VTDFYPSQVK VQWFRNGQEE TAGVVSTPLI
RNGDWTYQVL VMLEMNLQRG DVYTCRVEHS SLQSPILVEW RAQSESAQSK MLSGVGGFVL
GLIFLGLGLF IRHRSQKGLV R


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100293977PREDICTED: HLA class II histocompatibility antigen, DQ beta 1 chain-like isoform 2 [Homo sapiens]. 382e-106
Contig/Assembly ProteinHLA-DQB1HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]. 380e-105
Contig/Assembly ProteinLOC100507714PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 1 [Homo sapiens]. 2993e-81


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]. 3301e-90O
Contig/Assembly ProteinH2-Eb1H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. 3017e-82
Contig/Assembly ProteinH2-Eb2histocompatibility 2, class II antigen E beta2 [Mus musculus]. 2556e-68
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus [Mus musculus]. 2441e-64
Contig/Assembly ProteinH2-Q6histocompatibility 2, Q region locus 6 [Mus musculus]. 62.85e-10


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DQB1major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. 388e-108O
Contig/Assembly ProteinHLA-DRB1DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris]. 3102e-84
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta [Canis lupus familiaris]. 2688e-72O
Contig/Assembly ProteinLOC607827PREDICTED: similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) [Canis familiaris]. 74.72e-13O
Contig/Assembly ProteinDLA-79PREDICTED: MHC class Ib [Canis familiaris]. 59.37e-09


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLA-DQBMHC cell surface glycoprotein [Bos taurus]. 392e-109
Contig/Assembly ProteinBLA-DQBboLa class II histocompatibility antigen, DQB*0101 beta chain precursor [Bos taurus]. 386e-107
Contig/Assembly ProteinBOLA-DQBmajor histocompatibility complex, class II, DQ beta [Bos taurus]. 371e-103
Contig/Assembly ProteinBOLA-DYBmajor histocompatibility complex, class II, DY beta [Bos taurus]. 2962e-80
Contig/Assembly ProteinDSBMHC class II antigen DS beta [Bos taurus]. 2555e-68


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLA-DQB1SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa]. 459e-129
Contig/Assembly ProteinSLA-DRB1MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa]. 3116e-85
Contig/Assembly ProteinLOC100513292PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 2884e-78
Contig/Assembly ProteinLOC100519552PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 2886e-78
Contig/Assembly ProteinSLA-DRAMHC class II DR-alpha [Sus scrofa]. 68.29e-12


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-061604.1CTGTGCAAGAGAAGCACATTGAAACCATTTAACTGGCTATAGAGTGCTTTTTTAAAAATC


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003082620030826C-00344421fwd
2004020420040204C-00376220fwd
2005032220050322C-00020847fwd
2006061120060611C-00017950fwd
2007080620070806C-00030450fwd
2008051520080515C-00057553fwd
2010100120101001C-01113552fwd
2011060120110601C-00184152fwd