[Help]

[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  OVR01_0045_B03

Library: OVR01 (Ovary)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)

Nucleotide sequence:   (length: 1,235)  [FASTA format sequence]
GGCACAGTAC CCATTTGAGT GGGACTTGCC TGCTCCCCTC ACACACTGTC CTCTCCTGTT
CTCCAGC
ATG TTGCATCTGT GTTTCTCCAG AGGCTTCTGG ATGGCAGCTC TGACCATGAT
GCTGGTGGTG CTGAGCCCTC CCTTGGCTTT GGCCAGGGAC ACCCCACCGC ATTTCTTGTT
TCTGGGGAAG GCTGAGTGTC ATTTCTTCAA CGGGACGGAG CGGGTGAGGT TTCTGGACAG
ATACTTCTAT AATGGAGATG AGTACGTGCG CTTCGACAGC GACGTGGGCG AGTTCCGGGA
AGTGACCGAA TTTGGGCGGC CAGACGCCAA GTACTGGAAC AGCCAGAAGG ACTTCATGGA
GCAGAAGCGG GCGGAGGTGG ACACGGTGTG CAGACACAAC TACGAGATCT TAGAGACCTT
CCTCGTGCCG CGGCGAGCTG AGCCCAGAGT GACAGTGTAC CCTGCAAAGA CCCAGCCCCT
GCAGCACCAC AACCTCCTGG TCTGCTCTGT GACCGGGTTC TACCCAGGCC ATGTGGAGGT
CAGGTGGTTC CGGAATGGCC AGGAAGAGGC GGCGGGGGTG GTCTCCACAG GCCTGATCCC
TAATGGAGAC TGGACCTTCC AGACCATGGT GATGCTTGAA ACTGTTCCTC AGAGTGGAGA
GGTCTACACC TGCCGAGTGG AGCACCCCAG CCTGACGAGC CCCGTCACAG TGGAATGGAG
GGCACGGTCT GAATCTGCTC AGGGCAAGAT GATGAGTGGG ATCGGGGGCT TCGTCCTGGG
TCTGCTCTTT GTTGCTGTGG GGCTGTTCAT CTACTTCAAG AATCAGAAAG GACGCCCTGC
CCTTCAGCCA ACAGGCCTCC TGAGCTGAAG TGCAGATGGT GACACTCCAA GCAAGCATCC
TCTGTGCCAG CGTCTTCACA GCATGAGAAG GCTCCTGCTA TGCTCTGCGT CCTCCCCCAG
GAGAGCTCTT CCTCAGACTC TCCTTTGCTT CTGGTTCAGG GACCCTGCAG AAAAGGTCTT
TTGATGGCTT TCTCAGCCTC CCCCCTTTGA CCTGGAAGTT CCTGGCATTG ATTGCTATGC
CTATGTTCAT TTTTCTTTTT TTTTTTTCTG GTTGGTCCCT GTTGTTTTCG ACGTTACTGC
CTCCTGTGCA TCTGAACTCA TCCACTGCCC ATATTACCTT ATTATGTTTT TCTCCAATAA
ATATGGAGTG ACAAAAAAAA AAAAAAAAAA AAAAA

Deduced amino acid sequence:  (length: 266) [FASTA format sequence]
MLHLCFSRGF WMAALTMMLV VLSPPLALAR DTPPHFLFLG KAECHFFNGT ERVRFLDRYF
YNGDEYVRFD SDVGEFREVT EFGRPDAKYW NSQKDFMEQK RAEVDTVCRH NYEILETFLV
PRRAEPRVTV YPAKTQPLQH HNLLVCSVTG FYPGHVEVRW FRNGQEEAAG VVSTGLIPNG
DWTFQTMVML ETVPQSGEVY TCRVEHPSLT SPVTVEWRAR SESAQGKMMS GIGGFVLGLL
FVAVGLFIYF KNQKGRPALQ PTGLLS


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DRB1major histocompatibility complex, class II, DR beta 1 precursor [Homo sapiens]. 392e-109O
Contig/Assembly ProteinLOC100507714PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 2 [Homo sapiens]. 384e-106


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Eb1H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. 380e-105O
Contig/Assembly ProteinH2-Eb2histocompatibility 2, class II antigen E beta2 [Mus musculus]. 3054e-83
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]. 2923e-79
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus [Mus musculus]. 2585e-69
Contig/Assembly ProteinAzgp1zinc-alpha-2-glycoprotein precursor [Mus musculus]. 673e-11


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DRB1DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris]. 392e-109O
Contig/Assembly ProteinHLA-DQB1major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. 3393e-93
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta [Canis lupus familiaris]. 2856e-77O
Contig/Assembly ProteinAZGP1PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis familiaris]. 73.64e-13
Contig/Assembly ProteinLOC474869PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 11 [Canis familiaris]. 65.98e-11


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBoLA-DRB3major histocompatibility complex, class II, DRB3 [Bos taurus]. 416e-116O
Contig/Assembly ProteinLOC786695PREDICTED: major histocompatibility complex, class II, DR beta 3-like [Bos taurus]. 394e-109
Contig/Assembly ProteinBOLA-DRB2PREDICTED: histocompatibility complex, class II, DR beta 2 [Bos taurus]. 3525e-97
Contig/Assembly ProteinBOLA-DOBmajor histocompatibility complex, class II, DO beta [Bos taurus]. 2602e-69


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLA-DRB1MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa]. 476e-135
Contig/Assembly ProteinLOC100519552PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 375e-104
Contig/Assembly ProteinLOC100513292PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 364e-101
Contig/Assembly ProteinSLA-DQB1SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa]. 3131e-85
Contig/Assembly ProteinSLA-7MHC class I antigen 7 [Sus scrofa]. 73.23e-13


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-080074.1TCTGAACTCATCCACTGCCCATATTACCTTATTATGTTTTTCTCCAATAAATATGGAGTG


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003053120030531C-00284925fwd
2003082620030826C-00342625fwd
2004020420040204C-00374223fwd
2005032220050322C-00478530fwd
2006061120060611C-00538930fwd
2007080620070806C-00672030fwd
2008051520080515C-00052029fwd
2010100120101001C-01108728fwd
2011060120110601C-00096428fwd