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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVR01_0045_B03
Library: OVR01 (Ovary) Individual: LWD1 , Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence :
(length: 1,235)
[FASTA format sequence] GGCACAGTAC CCATTTGAGT GGGACTTGCC TGCTCCCCTC ACACACTGTC CTCTCCTGTT CTCCAGC ATG TTGCATCTGT GTTTCTCCAG AGGCTTCTGG ATGGCAGCTC TGACCATGAT GCTGGTGGTG CTGAGCCCTC CCTTGGCTTT GGCCAGGGAC ACCCCACCGC ATTTCTTGTT TCTGGGGAAG GCTGAGTGTC ATTTCTTCAA CGGGACGGAG CGGGTGAGGT TTCTGGACAG ATACTTCTAT AATGGAGATG AGTACGTGCG CTTCGACAGC GACGTGGGCG AGTTCCGGGA AGTGACCGAA TTTGGGCGGC CAGACGCCAA GTACTGGAAC AGCCAGAAGG ACTTCATGGA GCAGAAGCGG GCGGAGGTGG ACACGGTGTG CAGACACAAC TACGAGATCT TAGAGACCTT CCTCGTGCCG CGGCGAGCTG AGCCCAGAGT GACAGTGTAC CCTGCAAAGA CCCAGCCCCT GCAGCACCAC AACCTCCTGG TCTGCTCTGT GACCGGGTTC TACCCAGGCC ATGTGGAGGT CAGGTGGTTC CGGAATGGCC AGGAAGAGGC GGCGGGGGTG GTCTCCACAG GCCTGATCCC TAATGGAGAC TGGACCTTCC AGACCATGGT GATGCTTGAA ACTGTTCCTC AGAGTGGAGA GGTCTACACC TGCCGAGTGG AGCACCCCAG CCTGACGAGC CCCGTCACAG TGGAATGGAG GGCACGGTCT GAATCTGCTC AGGGCAAGAT GATGAGTGGG ATCGGGGGCT TCGTCCTGGG TCTGCTCTTT GTTGCTGTGG GGCTGTTCAT CTACTTCAAG AATCAGAAAG GACGCCCTGC CCTTCAGCCA ACAGGCCTCC TGAGCTGAAG TGCAGATGGT GACACTCCAA GCAAGCATCC TCTGTGCCAG CGTCTTCACA GCATGAGAAG GCTCCTGCTA TGCTCTGCGT CCTCCCCCAG GAGAGCTCTT CCTCAGACTC TCCTTTGCTT CTGGTTCAGG GACCCTGCAG AAAAGGTCTT TTGATGGCTT TCTCAGCCTC CCCCCTTTGA CCTGGAAGTT CCTGGCATTG ATTGCTATGC CTATGTTCAT TTTTCTTTTT TTTTTTTCTG GTTGGTCCCT GTTGTTTTCG ACGTTACTGC CTCCTGTGCA TCTGAACTCA TCCACTGCCC ATATTACCTT ATTATGTTTT TCTCCAATAA ATATGGAGTG ACAAAAAAAA AAAAAAAAAA AAAAA
Deduced amino acid sequence : (length: 266) [FASTA format sequence] MLHLCFSRGF WMAALTMMLV VLSPPLALAR DTPPHFLFLG KAECHFFNGT ERVRFLDRYF YNGDEYVRFD SDVGEFREVT EFGRPDAKYW NSQKDFMEQK RAEVDTVCRH NYEILETFLV PRRAEPRVTV YPAKTQPLQH HNLLVCSVTG FYPGHVEVRW FRNGQEEAAG VVSTGLIPNG DWTFQTMVML ETVPQSGEVY TCRVEHPSLT SPVTVEWRAR SESAQGKMMS GIGGFVLGLL FVAVGLFIYF KNQKGRPALQ PTGLLS
SNP mapping information
SNP ID Rel. Chr. Location (cM)
BLAST on RefSeq (Human) : TOP
Locus Definition Score E value FL
HLA-DRB1 major histocompatibility complex, class II, DR beta 1 precursor [Homo sapiens]. 392 e-109 O
LOC100507714 PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 2 [Homo sapiens]. 384 e-106
BLAST on RefSeq (Mouse) : TOP
Locus Definition Score E value FL
H2-Eb1 H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. 380 e-105 O
H2-Eb2 histocompatibility 2, class II antigen E beta2 [Mus musculus]. 305 4e-83
H2-Ab1 histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]. 292 3e-79
H2-Ob histocompatibility 2, O region beta locus [Mus musculus]. 258 5e-69
Azgp1 zinc-alpha-2-glycoprotein precursor [Mus musculus]. 67 3e-11
BLAST on RefSeq (Dog) : TOP
Locus Definition Score E value FL
HLA-DRB1 DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris]. 392 e-109 O
HLA-DQB1 major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. 339 3e-93
HLA-DOB major histocompatibility complex, class II, DO beta [Canis lupus familiaris]. 285 6e-77 O
AZGP1 PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis familiaris]. 73.6 4e-13
LOC474869 PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 11 [Canis familiaris]. 65.9 8e-11
BLAST on RefSeq (Cattle) : TOP
Locus Definition Score E value FL
BoLA-DRB3 major histocompatibility complex, class II, DRB3 [Bos taurus]. 416 e-116 O
LOC786695 PREDICTED: major histocompatibility complex, class II, DR beta 3-like [Bos taurus]. 394 e-109
BOLA-DRB2 PREDICTED: histocompatibility complex, class II, DR beta 2 [Bos taurus]. 352 5e-97
BOLA-DOB major histocompatibility complex, class II, DO beta [Bos taurus]. 260 2e-69
BLAST on RefSeq (Pig) : TOP
Locus Definition Score E value FL
SLA-DRB1 MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa]. 476 e-135
LOC100519552 PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 375 e-104
LOC100513292 PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 364 e-101
SLA-DQB1 SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa]. 313 1e-85
SLA-7 MHC class I antigen 7 [Sus scrofa]. 73.2 3e-13
Oligo-microarray probe : TOP
Probe ID Rel. Probe sequence AGPOA4-08007 4.1 TCTGAACTCATCCACTGCCCATATTACCTTATTATGTTTTTCTCCAATAAATATGGAGTG
Assembly member : TOP