[Help]

[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  OVR01_0084_A01

Library: OVR01 (Ovary)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)

Nucleotide sequence:   (length: 1,986)  [FASTA format sequence]
CAGGTGGGCT GGGGAAGCCA GAGACCCAGG CGCGCCACCG CCACCGATCG GGATTGGAGG
TCTGCGCAAG GACC
ATGGGT GCGTCGCTGG GCAGCGGCGC GCGGGTGGCT CTCCTGCCCC
GCCAGGCCTG CGGCGCCGTC CGGCGCTGGG CACCCCCCGC GCCCGCCCGA GACTGCCACT
CCAAGACGGG CCTGCCGCGT CCTGTGCCCC TGAAGAAGCG CGGATACGAT GTCACCAGGA
ATCCGCATCT CAACAAGGGT ATGGCCTTCA CACTTGAAGA AAGGCTGCAG CTTGGAATCC
ATGGCCTAAT CCCCCCCTGC TTCTTGAGCC AGGACGTCCA GCTCCTCCGG ATCATGAGAT
ACTACGAGCG GCAGCAGAGT GACCTGGACA AGTACATCAT TCTGATGACC CTCCAAGACC
GGAACGAGAA GCTCTTCTAC CGAGTGCTGA CGTCCGACGT GGAGAAATTC ATGCCCATCG
TGTACACGCC CACCGTGGGA CTGGCCTGTC AGCACTACGG CCTGACCTTC CGCAGGCCCC
GTGGGCTCTT TATCACCATT CATGACAAGG GCCATCTTCC AACAATGCTG AACTCTTGGC
CAGAAGATGA TATTAAGGCT GTGGTGGTGA CCGATGGGGA GCGCATCCTG GGCCTGGGAG
ACCTGGGCTG CTACGGCATG GGCATCCCCG TGGGCAAGCT GGCCCTGTAC ACGGCGTGTG
GAGGCGTCAA CCCTCGGCAG TGCCTCCCTG TCCTGCTGGA CGTCGGCACC AACAACGAGG
AGCTGCTCCG AGACCCTCTG TACATCGGCC TGAAGCACCG GCGCGTGCGC GGCCAAGATT
ACGACGACCT TCTGGACGAG TTCATGCAGG CTGTGACGGA CAAGTTTGGA ATAAATTGCC
TCATTCAGTT TGAAGACTTT GCCAACGCCA ATGCCTTCCG CCTTCTCAAC AAATACCGCA
ACAAGTACTG CATGTTCAAC GATGACATCC AAGGCACAGC CTCCGTCGCT GTGGCAGGGA
TCCTGGCTGC TCTGCGAATC ACCAAGAACA AGCTCTCCAA CCACGTGTTT GTTTTCCAAG
GTGCCGGTGA GGCAGCCATG GGCATCGCCC ACCTCCTTGT CATGGCCCTA GAGAAAGAAG
GTGTACCCAA GGCAGAGGCC ACAAGGAAGA TCTGGATGGT GGACTCCAGA GGGCTCATTG
TCAAGGGGAG GAGCCACCTG AACCATGAGA AGGAGATGTT TGCCCAGGAC CATCCTGAAG
TGAGCTCCCT CGAGGAGGTG GTGAGGCTGG TGAAGCCCAC AGCCATCATA GGTGTTGCCG
CCATCGCAGG AGCCTTCACG GAGCAGATTC TGAGGGACAT GGCCTCCTTC CACGAGCGCC
CTATCATCTT TGCCCTGAGC AACCCCACCA GCAAGGCCGA GTGCACGGCT GAGAAGTGCT
ACCGGGTCAC CGAGGGCCGA GGGATCTTTG CCAGTGGGAG TCCTTTTAAA AGCGTGACCC
TGGAAGATGG CAGGACCTTC ATTCCCGGGC AGGGAAACAA CGCCTACGTG TTCCCCGGAG
TGGCTCTGGG CGTCATCGCT GGCGGGATCC GGCACATCCC AGACGAGATC TTCCTCCTGA
CAGCAGAGCA AATTGCCCAA GAGGTCTCGG AGCAGCATCT GTCACAGGGG AGACTGTACC
CACCGCTCAG CACCATCCGA GACGTGTCTC TGAGAATCGC CATCAAAGCC CTCGACTACG
CGTACAAACA CAACCTGGCC TCCTACTACC CAGAGCCCAA GGACAAGGAG GCTTTTGTAA
GATCCCTGGT CTATACTCCA GACTATGACT CCTTTACGCT GGACAGCTAC ACTTGGCCCA
AGGAAGCCAT GAATGTTCAG AATGTCTGAT GCAATTGCAG AGGTTCATGG GGGGCTGGAT
GAAGCCCAAA GTAACACTGG AACTATAAAT GGGATCCAAA CTGGCAAAAA AAAAAAAAAA
AAAAAA

Deduced amino acid sequence:  (length: 604) [FASTA format sequence]
MGASLGSGAR VALLPRQACG AVRRWAPPAP ARDCHSKTGL PRPVPLKKRG YDVTRNPHLN
KGMAFTLEER LQLGIHGLIP PCFLSQDVQL LRIMRYYERQ QSDLDKYIIL MTLQDRNEKL
FYRVLTSDVE KFMPIVYTPT VGLACQHYGL TFRRPRGLFI TIHDKGHLPT MLNSWPEDDI
KAVVVTDGER ILGLGDLGCY GMGIPVGKLA LYTACGGVNP RQCLPVLLDV GTNNEELLRD
PLYIGLKHRR VRGQDYDDLL DEFMQAVTDK FGINCLIQFE DFANANAFRL LNKYRNKYCM
FNDDIQGTAS VAVAGILAAL RITKNKLSNH VFVFQGAGEA AMGIAHLLVM ALEKEGVPKA
EATRKIWMVD SRGLIVKGRS HLNHEKEMFA QDHPEVSSLE EVVRLVKPTA IIGVAAIAGA
FTEQILRDMA SFHERPIIFA LSNPTSKAEC TAEKCYRVTE GRGIFASGSP FKSVTLEDGR
TFIPGQGNNA YVFPGVALGV IAGGIRHIPD EIFLLTAEQI AQEVSEQHLS QGRLYPPLST
IRDVSLRIAI KALDYAYKHN LASYYPEPKD KEAFVRSLVY TPDYDSFTLD SYTWPKEAMN
VQNV


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinME3NADP-dependent malic enzyme, mitochondrial precursor [Homo sapiens]. 10990.0
Contig/Assembly ProteinME1NADP-dependent malic enzyme [Homo sapiens]. 8150.0
Contig/Assembly ProteinME2NAD-dependent malic enzyme, mitochondrial isoform 1 precursor [Homo sapiens]. 6350.0


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMe3NADP-dependent malic enzyme, mitochondrial precursor [Mus musculus]. 10880.0
Contig/Assembly ProteinMe1NADP-dependent malic enzyme isoform 1 [Mus musculus]. 8110.0
Contig/Assembly ProteinMe2NAD-dependent malic enzyme, mitochondrial precursor [Mus musculus]. 628e-180
Contig/Assembly ProteinLOC100505264PREDICTED: NAD-dependent malic enzyme, mitochondrial-like [Mus musculus]. 582e-166


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC485151PREDICTED: similar to malic enzyme 3, NADP(+)-dependent, mitochondrial isoform 2 [Canis familiaris]. 10920.0


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinME3NADP-dependent malic enzyme, mitochondrial [Bos taurus]. 10920.0
Contig/Assembly ProteinME1NADP-dependent malic enzyme [Bos taurus]. 7820.0
Contig/Assembly ProteinME2NAD-dependent malic enzyme, mitochondrial [Bos taurus]. 6340.0
Contig/Assembly ProteinLOC100299244PREDICTED: predicted protein-like, partial [Bos taurus]. 622e-09


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinME3PREDICTED: LOW QUALITY PROTEIN: NADP-dependent malic enzyme, mitochondrial [Sus scrofa]. 11260.0
Contig/Assembly ProteinME1PREDICTED: NADP-dependent malic enzyme [Sus scrofa]. 8220.0
Contig/Assembly ProteinME2PREDICTED: NAD-dependent malic enzyme, mitochondrial [Sus scrofa]. 523e-148


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-050474.1TTCTCAACAAATACCGCAACAAGTACTGCATGTTCAACGATGACATCCAAGGCACAGCCT


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2005032220050322C-0061726fwd
2006061120060611C-0069638fwd
2007080620070806C-0083918fwd
2008051520080515C-0035592fwd
2010100120101001C-01232310fwd
2011060120110601C-00824510fwd