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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVR01_0097_B09
Library: OVR01 (Ovary)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,505)
[FASTA format sequence]
CTTTCCAGCC AGGAGGCTGC AGGGTCAGAG CTCTCTCGCA GGCATGAATC AGCCTCCCCT
CCAGCCTTCG TAAAGGCTTG CTCCGCCCTG TCCGGGGTCA GAGAGACGTT CAGACGTCCA
CCCTACATAA AGCCTCGGCA CCCACCGCGC AGGAACCAAG ACTGCCTCGA GGTTGGAGGC
TGTGCACCCT CGTCCCGCCG GGGCCTTCTG GGGACAACTT GCCCCACCGG CCACTTTAAG
TCGGACACCA TGAACTCTGT TCGCACCCAC GGGCTGGTGC TTCTGCCGCT GCTCCTGGTG
GGGACTGCGC TGGGAGATGC TCCTCGGGCG TCGCCAGGAA ATTACTCGGA GATCTGCCTC
CTGCACCCAG ACGAGGGGCC CTGCCGTGCC CTGGTCCCCA GTTACTACTA CGACAGGTAC
ACGCAGAGCT GCCGAGAGTT CATGTATGGG GGCTGCGAGG GCAATGCCAA CAATTTTGAA
ACGTGGGAGG CCTGCGACGA AGCGTGCTGG AGGATAGAGA AAGTTCCCAA AATTTGCCGA
TTAGAAGTCA GTAAGAGGCA GTGTGGGGAG CTCAGAGAAG AGTATTTCTT CAATCTAAGT
TCCATGACAT GTGAAAAATT CCTATCTGGC GGGTGTCATG GCAATGCAAA TCGGTTTCTG
GATGAAGCTA CGTGTATGGG CTTCTGTGCG CCAAAGAAAA GTCCATCATT TTGCTATAGT
CCAAAAGATG AGGGACTGTG TTCTGCTAAT GTGACTCGCT ATTATTTTAA TCCAAGACAC
AAAGCCTGTG AGACCTTCAC CTATACTGGC TGTGGAGGGA ATGACAATAA TTTTGTCAGC
ATGAAGGACT GCAAACGTGC ATGTGTAAAA GCCTTGAAGA AGGAAAAGAA GATGCCAAGA
CTTCTCCTTG CCAGTAGAAG ACTAAAAATT AAGAAGAAGC AATTTTAACC ATTTTTTTTT
TCTGTATGTC ATCTTGTGAA TGCCTTTATG GTTATATCTG AAGGATAATC TGATAACATA
AGTAAACAAA TCATTAGTGA TTTATTCACC AGTTTTTATA TGTTACATGT TTTTATTTGT
GTATTTTTTA TACATAATTA GCTGCTATTC AAACATGAAT CTTTTAGCTT AAATTGACTG
TTCAACTCTT TTATGAGGTT AAACTTTTGC TGTGCGTAAG ATATAAAAGC AAATATGACT
CATCCAGTTA TTGGGGTTGC TCCCCCTGAC GTCAGAAAGA CGACACTAGC TGAAAATTTT
AAGACAGTAT AATCATATTT TTTTAACATA TTGGATCATA AAGAGGACCA GCAAATATAT
TTCATTCTGC CTATAAATGT TAGATTATAT TTTAGGCCCA AGGAAACAAA CTTGCAGATT
TACCAACACT TCAAAAAATA TTACAAGTGC TATTATGTAG ATATTGCTAC TTTACTTCCA
TTTCTGTTGT GTCATTTAAG AGATAATAAA ATAATTGTTT GAATTAAAAA AAAAAAAAAA
AAAAA
Deduced amino acid sequence: (length: 232) [FASTA format sequence]
MNSVRTHGLV LLPLLLVGTA LGDAPRASPG NYSEICLLHP DEGPCRALVP SYYYDRYTQS
CREFMYGGCE GNANNFETWE ACDEACWRIE KVPKICRLEV SKRQCGELRE EYFFNLSSMT
CEKFLSGGCH GNANRFLDEA TCMGFCAPKK SPSFCYSPKD EGLCSANVTR YYFNPRHKAC
ETFTYTGCGG NDNNFVSMKD CKRACVKALK KEKKMPRLLL ASRRLKIKKK QF
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TFPI2 | tissue factor pathway inhibitor 2 precursor [Homo sapiens]. | 343 | 3e-94 | O |
|
| TFPI | tissue factor pathway inhibitor isoform a precursor [Homo sapiens]. | 148 | 1e-35 | O |
|
| SPINT1 | kunitz-type protease inhibitor 1 isoform 2 precursor [Homo sapiens]. | 99.8 | 6e-21 | |
|
| SPINT2 | kunitz-type protease inhibitor 2 isoform b precursor [Homo sapiens]. | 67.8 | 3e-11 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tfpi2 | tissue factor pathway inhibitor 2 precursor [Mus musculus]. | 240 | 2e-63 | O |
|
| Tfpi | tissue factor pathway inhibitor isoform a precursor [Mus musculus]. | 145 | 8e-35 | |
|
| Wfdc8 | WAP four-disulfide core domain protein 8 [Mus musculus]. | 65.5 | 1e-10 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC475230 | PREDICTED: similar to Tissue factor pathway inhibitor 2 precursor (TFPI-2) (Placental protein 5) (PP5) [Canis familiaris]. | 362 | e-100 | O |
|
| TFPI | tissue factor pathway inhibitor [Canis lupus familiaris]. | 103 | 6e-22 | |
|
| LOC487501 | PREDICTED: similar to hepatocyte growth factor activator inhibitor 1 isoform 2 precursor [Canis familiaris]. | 99.8 | 6e-21 | |
|
| LOC481685 | PREDICTED: similar to AMBP protein precursor [Canis familiaris]. | 82.4 | 1e-15 | |
|
| LOC485895 | PREDICTED: similar to Tissue factor pathway inhibitor precursor (TFPI) (Lipoprotein-associated coagulation inhibitor) (LACI) (Extrinsic pathway inhibitor) (EPI) [Canis familiaris]. | 66.2 | 8e-11 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TFPI2 | tissue factor pathway inhibitor 2 precursor [Bos taurus]. | 383 | e-106 | O |
|
| TFPI | PREDICTED: tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor) isoform 2 [Bos taurus]. | 155 | 1e-37 | |
|
| TKDP1 | trophoblast Kunitz domain protein 1 precursor [Bos taurus]. | 65.5 | 1e-10 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC100520144 | PREDICTED: tissue factor pathway inhibitor 2-like [Sus scrofa]. | 620 | e-178 | |
|
| LOC100155068 | hypothetical protein LOC100155068 [Sus scrofa]. | 150 | 2e-36 | |
|
| AMBP | protein AMBP precursor [Sus scrofa]. | 82 | 8e-16 | |
|
| LOC100515207 | PREDICTED: kunitz-type protease inhibitor 2-like isoform 1 [Sus scrofa]. | 74.7 | 1e-13 | |
|
| LOC100158011 | PREDICTED: hypothetical protein LOC100158011 [Sus scrofa]. | 62.8 | 5e-10 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-11826 | 4.1 | GGCCCAAGGAAACAAACTTGCAGATTTACCAACACTTCAAAAAATATTACAAGTGCTATT |
Assembly member: TOP