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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0040_A01
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 2,064)
[FASTA format sequence]
GAGCCAGGCT GTTGCTGAGC ACCCAGGATC GAGAAGAGGC AGAGGAAAGG GAAGCAGAGA
GAAGCAGCCA AGAGTTGGAG CCAGACCAGG AGGAGCCCGA GTGGAGTTGA AGTTCCTTTT
GCAGAGGCGG CAGCAAGTAA AGCAGTTGAA ACGATGCTGG CTGTCTTGGG ACTGCTCACC
TCCTTCCTTT TTTTCCTGTA TGTGACAGCT CCATCCATCA GGAAGTTCTT TGCTGGTGGG
GTTTGTAGGA CAAACATGCA GCTTCCCGGG AAGGTGGTGG TGATCACGGG TGCCAACACG
GGCATTGGCA AGGAGACAGC CAGAGAGCTC GCTCGCAGAG GAGCCCGAGT ATACATTGCC
TGCCGAGATG TACTGAAGGG GGAGTCTGCT GCCAGTGAAA TCCGAGCTGA TACAAAGAAC
TCCCAGGTGC TGGTGCGGAA ACTGGACCTC TCTGATACCA AATCCATCCG AGCCTTTGCT
GAGGGCTTTC TGACAGAGGA AAAGCAGCTC CATATTCTGA TCAACAATGC TGGAGTGATG
TTGTGTCCAT ATTCCAAGAC AGCGGATGGC TTTGAGACCC ACCTGGGAGT CAACCACCTG
GGCCACTTCC TTCTCACGCA CTTGCTCTTG GAGCAGCTGA AGGCATCTGC TCCCGCACGG
GTGGTGAACC TGTCATCCGT GGTCCACCAT GCTGGCAAGA TTCGCTTCCA CGACCTCCAG
GGTGAGAAGC ACTACAACCG GGGTTTTGCT TATTGCCACA GCAAGCTGGC CAACGTGCTC
TTTACTCGGG AACTGGCCAA GAGGCTCCAA GGCACGGGGG TCACCACGTA CGCAGTGCAC
CCAGGCATCG TCCAGTCTGA GCTGGTCCGG CATTCCTTCC TGCTGTGCCT GCTCTGGCGG
CTCTTCTCCC CCTTCCTCAA AACAGCGCGG GAGGGGGCCC AGACCAGCCT GCACTGCGCC
CTGGCCGAGG GCCTGGAGCC CCTGAGCGGC AAGTACTTCA GTGACTGCAA GAGGGCCTGG
GTGTCGCCAA GGGCCCGGAA TAACAAAACG GCCGAGCGCT TGTGGAACGT CAGCTGCGAG
CTCCTGGGAA TCCAGTGGGA GTAGAGCTGC TGGAAGATGC GCGGCTGTAT CAAGCCTGGT
CCAGGCCATA ACGCAGACCG GGGAGATGGC CCACCCCGAA GGACTGACCT GGCTGGCTGC
TGTCCCAAAC ACTTCCCTGC TTCGATTCTC CTGATCCTTG GAAAACCTCC CCACACCTAA
CCCTCTCACC AGGCTGATTC TCGGCATAAG AGGTTCATAC CTGGAGAGCA TCGTCCTTGA
AGACTTGCAG AGTTGGCCAC CTTCTCAGGG CAGGAGGACT GGGCAGATGC CAGGCTGGGC
ACAGGGATGG CAGAGGAACC TGGGAAATTG AGTCAATTTC CTCACCAATA CCAGAAACCC
CAGCCAGCAC CCTCGGGAGG TGTCAGTGTT ACATATTTTC AGGGACATAG ACTCAAACAC
CTGACCGATC TCTTTCCTCT TTGAAATATT AGTCTGCAGT CTGGACTATG TGGACTTAAA
AAATGCACAA CCCGAGAGTT AAGTTTTATG GGGGGCAAAA TTAGGACATA AGCCCAAGAG
ACAGCATCTC AGGTAGCCCT GAGAAACCAC TCTGGGGTGA GGGGGGAAGC TAGGATATGT
GAGTTTTTGC AACAAAGGGA AGATAGTAGA AACAGAAGAT TTATAGATAA CCAGATTTAC
AGAAGATTTA TACAAAACCA GTTTCTCTGG GAAGATGTAA AAGTCTGGGC TTCCCAGAGT
TCCCTTTATG GCTCAGCAGT TAAGGAACCC AACTAGGATC CATGAGGATG TGGGTTTGAT
CCCTGGCTCT GCTCAGTGGG TTAAGGATTC GGCATTGCCG TGAGCTGTGG TGTAGGTCAC
AGATGCAGCT TGCTTGGATC CCGCTTGGCA ACGGCTGTGG TGTAGGCGGG CAGGTGCAGC
TCTGATTCAA CCCCTAGCCT GGTTCCACCC TAAAAAGCAA AAAAAAAAAA AAAACAAAAA
AAACAAAAAA AAAAAAAAAA AAAA
Deduced amino acid sequence: (length: 316) [FASTA format sequence]
MLAVLGLLTS FLFFLYVTAP SIRKFFAGGV CRTNMQLPGK VVVITGANTG IGKETARELA
RRGARVYIAC RDVLKGESAA SEIRADTKNS QVLVRKLDLS DTKSIRAFAE GFLTEEKQLH
ILINNAGVML CPYSKTADGF ETHLGVNHLG HFLLTHLLLE QLKASAPARV VNLSSVVHHA
GKIRFHDLQG EKHYNRGFAY CHSKLANVLF TRELAKRLQG TGVTTYAVHP GIVQSELVRH
SFLLCLLWRL FSPFLKTARE GAQTSLHCAL AEGLEPLSGK YFSDCKRAWV SPRARNNKTA
ERLWNVSCEL LGIQWE
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | RDH12 | retinol dehydrogenase 12 [Homo sapiens]. | 554 | e-157 | |
|
| RDH11 | retinol dehydrogenase 11 [Homo sapiens]. | 429 | e-120 | |
|
| RDH13 | retinol dehydrogenase 13 isoform 1 [Homo sapiens]. | 261 | 1e-69 | |
|
| RDH14 | retinol dehydrogenase 14 [Homo sapiens]. | 248 | 1e-65 | |
|
| RDH16 | retinol dehydrogenase 16 [Homo sapiens]. | 68.2 | 3e-11 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Rdh12 | retinol dehydrogenase 12 [Mus musculus]. | 513 | e-145 | |
|
| Rdh11 | retinol dehydrogenase 11 [Mus musculus]. | 417 | e-116 | |
|
| Rdh13 | retinol dehydrogenase 13 [Mus musculus]. | 258 | 2e-68 | |
|
| Rdh14 | retinol dehydrogenase 14 [Mus musculus]. | 249 | 4e-66 | |
|
| Cbr3 | carbonyl reductase 3 [Mus musculus]. | 62.8 | 1e-09 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC490744 | PREDICTED: similar to retinol dehydrogenase 12 (all-trans and 9-cis) [Canis familiaris]. | 528 | e-150 | |
|
| LOC480366 | PREDICTED: similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12) [Canis familiaris]. | 402 | e-112 | |
|
| LOC611373 | PREDICTED: similar to Retinol dehydrogenase 13 [Canis familiaris]. | 270 | 4e-72 | |
|
| LOC482983 | PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis) isoform 1 [Canis familiaris]. | 248 | 2e-65 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| RDH12 | retinol dehydrogenase 12 [Bos taurus]. | 553 | e-157 | |
|
| RDH11 | PREDICTED: retinol dehydrogenase 11-like [Bos taurus]. | 410 | e-114 | |
|
| RDH13 | retinol dehydrogenase 13 [Bos taurus]. | 263 | 3e-70 | |
|
| DHRS12 | dehydrogenase/reductase SDR family member 12 [Bos taurus]. | 108 | 1e-23 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| RDH12 | retinol dehydrogenase 12 [Sus scrofa]. | 595 | e-170 | |
|
| LOC100154684 | PREDICTED: retinol dehydrogenase 11 [Sus scrofa]. | 424 | e-119 | |
|
| LOC100516970 | PREDICTED: retinol dehydrogenase 14-like [Sus scrofa]. | 251 | 8e-67 | |
|
| LOC100513982 | PREDICTED: retinol dehydrogenase 12-like [Sus scrofa]. | 106 | 6e-23 | |
|
| LOC100519057 | PREDICTED: dehydrogenase/reductase SDR family member 9-like, partial [Sus scrofa]. | 59.7 | 6e-09 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-00028 | 4.1 | TTTACAGAAGATTTATACAAAACCAGTTTCTCTGGGAAGATGTAAAAGTCTGGGCTTCCC |
Assembly member: TOP