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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0044_F04
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 2,137)
[FASTA format sequence]
TTGCCTTCCA TAGACAGAAC CCTTGGGCTT CTCCTCTGCT CTCTCCTCCT AAGGAAGAAA
AATCAATATA ACAAAGAAAT TTTATCCCTT CTTCATGAGC CATAGAAAAT AGTGCTGGGA
TTATTTTAAT GCTAAGATGA TATGATATAT GTTACAACAT ATGATGATGT ACTGATGTGT
ATAAGCGGAC TTTAAACCTC ATAGCATCCC TGCCCACTGC TGCCTGGGGT CAGTCAGTTT
TGAGACCATG ACCTGGTTTC TCACTTAGCA TTCCAGATGC CCACCCTCAC GAACTGTCAC
TCAGCCTCGC CCTTGTGCCT TGTTTCAGGT GTCCACTGTG ACAGCGTGTG TGCTGAGGGT
CGCTGGGGCC CCAACTGCTC CCTGCCCTGC TACTGTAAAA ACGGGGCTTC GTGCTCCCCG
GATGACGGCA TCTGTGAGTG TGCACCGGGG TTCCGAGGCA CCACCTGTCA GCGGAGTAAG
TGTCTCTTTA GGGGACAGCT TCCATCTTCC CTTCTCAGAT CCCCTGTTCT GCCCCTCAAT
TCACAGTTCT GTTGCCGTTG AGGGCAGGGA GAGCATCATA GGTCATTCTG TTCTTGGCAG
AGCTGTCCTC CCTCCATAGC CCTGCCCCAA AGGCTTCATT CTTTCCAACC TTTGGGACTC
ACCTGACAGA TGGGGCATTA GCTCTTTCTT CTCTGTAATG ATTTTATTGC CTCTCTGGCA
GCGCCATCGG TTTCTCAGTC CTGCCTTAAA CCTTGCAAAT GGTGTTCCAG AAATCCACTG
ACCTGTGACT GTTTTATTCA GCTATTTTGG CATTGGTCTT ACCTCAATTA CCAGAAGTCA
ACATCAGCCA AACCTTGCGG CAAAGCATGC ATCCTGTGGT AGTCTGAAAG CCAGTGCTCT
GGGGAAAATA GGCTTGTGGT ATTGAAAATG GGGGCTGTTG ACACTGGTCA GGAGACTTTT
TGAATTAGGG AGCAATCCGT AACATTTCAA GAAACCTTTT AGGGAGAGTA ATCAAGAAAG
GAATACATGA TTAATTATAG TGTACCGTAT TCTGTTTTTT AAATTACTTT TTTTTAATTA
AGAGTTCTAT GCTGTCCTTC CATACTTAAA TCCAAATAGT GTTGGAAAGA ATCTAATTAT
GAAGCATCTT GTTTCTTCTC TTTTTAATCA CAATCATTAA CCTGGACCAT TTTAAGGAGA
AACAATCTTT TAATTCTGAC TGTACATACA TTTATTGCCA GTAATGACTC TTAAAGAATA
AAAGATTAAC ATTGGCTTGA GAGTATTTAT TTGGGCCTTG CTAGTATTTA GAATTTTATT
TCTTTTTTAT TTGCTCAACA AAAATTCTTC AAGCCCCTGC TCTATGCCAG ACTTCGAGCT
AATTGGGGCC ATAAATAGGA AAATAAAGAG AACGAAGACA TTTGCCTGCC CTCAAGCAAT
TCAGAGTTTA CTGGCTTCTT TTCATTATTA AAGAGCGCTC TTGTTCCTTT TGTTCTTGTT
TTATACTTGG AAAATTCTCA GCATCCTTAA AAAGAATTTC TTTAACCCCA AAGTTGAACT
AGATCCTTAC ATGGTATATG AAAGAAACAC ATCTTAGGGA AGAGAAATGT CTAATGCCTT
TCTGTTTTCA GTCTGCTCCC CTGGATTTTA TGGGCATCGC TGCAGCCAGA CGTGCCCGCA
GTGTGTGCAC AGCAGTGGGC CCTGCCACCA CATCACAGGC CTGTGTGACT GCTTGCCTGG
CTTCACAGGC GCCCTCTGCA ATGAAGGTAG GGTGCACAGG CTTTGGGAGA AAAATGTGGT
GGTGAGCAAG CCCCATGCAG CTGTCCTCAG GCTTCCCAAA GGATGCGTTT TCGGCTAGCG
GCTAGCCACG CCTTCTGGTC TGCAGCTTCT GTAAAGATGA CTGAGCTTTG AAAAATCTGG
CTTGCCACTC TAAATCTCTT TATTCTCTGA GCTGTGCTGG TCTTCACTTT TAATTGGAAA
CAGCCTTCCA TGAAAAATCA ATATGCGGAG AGATTTTGAC TCCCTGAGCA AGAAGCCATG
AAGATTTCTA GCAATTCGGT GATGTCTCCT GGTTTGTGAT GCCTTAATGA GGATCTTTGG
CTTCAGACAT TTGTAAAAAA AAAAAAAAAA AAAAAAA
Deduced amino acid sequence: (length: 94) [FASTA format sequence]
MPTLTNCHSA SPLCLVSGVH CDSVCAEGRW GPNCSLPCYC KNGASCSPDD GICECAPGFR
GTTCQRSKCL FRGQLPSSLL RSPVLPLNSQ FCCR
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | MEGF10 | multiple epidermal growth factor-like domains protein 10 precursor [Homo sapiens]. | 123 | 6e-28 | |
|
| MEGF11 | multiple epidermal growth factor-like domains protein 11 precursor [Homo sapiens]. | 92.8 | 1e-18 | |
|
| PEAR1 | platelet endothelial aggregation receptor 1 precursor [Homo sapiens]. | 75.5 | 2e-13 | |
|
| MEGF6 | multiple epidermal growth factor-like domains protein 6 precursor [Homo sapiens]. | 63.9 | 6e-10 | |
|
| LAMA5 | laminin subunit alpha-5 precursor [Homo sapiens]. | 52.4 | 2e-06 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Megf10 | multiple epidermal growth factor-like domains protein 10 precursor [Mus musculus]. | 123 | 5e-28 | |
|
| Megf11 | multiple epidermal growth factor-like domains protein 11 isoform 1 [Mus musculus]. | 92.8 | 9e-19 | |
|
| Pear1 | platelet endothelial aggregation receptor 1 precursor [Mus musculus]. | 70.9 | 4e-12 | |
|
| Scarf1 | scavenger receptor class F member 1 [Mus musculus]. | 56.2 | 1e-07 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC474665 | PREDICTED: similar to MEGF10 protein [Canis familiaris]. | 125 | 2e-28 | |
|
| LOC487609 | PREDICTED: similar to MEGF11 protein [Canis familiaris]. | 94 | 5e-19 | |
|
| LOC490403 | PREDICTED: similar to MEGF10 protein [Canis familiaris]. | 74.3 | 4e-13 | |
|
| LOC489619 | PREDICTED: similar to EGF-like-domain, multiple 3 [Canis familiaris]. | 63.9 | 6e-10 | |
|
| LOC482535 | PREDICTED: similar to tyrosine kinase with immunoglobulin-like and EGF-like domains 1 [Canis familiaris]. | 54.3 | 5e-07 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| MEGF10 | multiple EGF-like-domains 10 [Bos taurus]. | 125 | 2e-28 | |
|
| LOC100336680 | PREDICTED: MEGF11 protein-like [Bos taurus]. | 95.9 | 1e-19 | |
|
| NAGPA | N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase [Bos taurus]. | 60.5 | 6e-09 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| MEGF10 | PREDICTED: multiple epidermal growth factor-like domains protein 10 [Sus scrofa]. | 123 | 4e-28 | |
|
| LOC100515463 | PREDICTED: multiple epidermal growth factor-like domains protein 11-like [Sus scrofa]. | 95.9 | 8e-20 | |
|
| PEAR1 | PREDICTED: platelet endothelial aggregation receptor 1 [Sus scrofa]. | 74.3 | 2e-13 | |
|
| LOC100624571 | PREDICTED: multiple epidermal growth factor-like domains protein 6-like [Sus scrofa]. | 64.3 | 3e-10 | |
|
| TEK | PREDICTED: angiopoietin-1 receptor [Sus scrofa]. | 51.6 | 2e-06 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-12406 | 4.1 | CAATTCGGTGATGTCTCCTGGTTTGTGATGCCTTAATGAGGATCTTTGGCTTCAGACATT |
Assembly member: TOP