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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0046_A04
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,345)
[FASTA format sequence]
GGGGCGGCCC CCCGGCGTAG GCAAAGGCTC GGGGGCCGGG GCGCGGCTGC TGCAGCTCTT
GCAAGAGCAG AGCCGAGCCG AGCGCCCGCC GCTGCCCGCC GCCCGCTGCG TGCGCCTCCG
CGCCATGGCT GGCCTCAACT CCCTGGAGGC GGTGAGACGC AAGATCCAGG CCCTGCAGCA
GCAGGCGGAC GAGGCAGAGG ATCGCGCGCA GGGCCTGCAG CGGGAGCTGG ACGGCGAGCG
CGAGCGGCGG GAGAAAGCCG AAGGGGATGT AGCAGCTCTC AATCGGCGCA TCCAACTCGT
TGAGGAGGAG TTGGACAGGG CTCAGGAACG ACTGGCCACA GCCCTGCAGA AGCTTGAGGA
GGCAGAAAAG GCTGCAGATG AGAGCGAGAG AGGAATGAAG GTGATAGAAA GCCGGGCCAT
GAAAGATGAG GAGAAGATGG AGATTCAGGA GATGCAGCTC AAAGAGGCCA AGCACATTGC
CGAGGAGGCC GACCGCAAAT ACGAGGAGGT AGCTCGTAAG TTGGTCATCC TGGAGGGCGA
GCTGGAGAGG GCAGAGGAGC GTGCCGAGGT GTCTGAACTA AAATGTGGTG ACCTGGAAGA
AGAACTCAAG AATGTCACCA ACAACCTGAA GTCGCTAGAG GCTGCATCTG AAAAGTATTC
TGAAAAGGAG GATAAATATG AAGAAGAGAT TAAACTTCTG TCTGACAAAC TGAAAGAGGC
TGAGACCCGT GCTGAATTTG CAGAGAGAAC AGTTGCAAAA CTGGAAAAGA CCATCGATGA
CCTGGAAGAA AAACTTGCCC AGGCCAAAGA AGAGAACGTG GGCTTACATC AGACACTGGA
TCAGACACTA AACGAACTAA ACTGTATATA ACCAAAACAG AAGAGTCTCG TTCCATCAGA
AACTCCAGAG CTACGTGTTT TTCTCTTCTC TTGTAAGAAG TTTCTTTTGT TATTGCCTCT
TTGCTTTGCT GGAAATGTCA AGCAAATTAT GAATACGTGA CCAAATATTT TGTATCAGAA
AAGCTTTGAG CACCAGTTAA ATCTATTCCT TCCTTTTTTT CAAGTGGCAC CAGCTTTTTC
AGCTCTATTT TTATCCTTAA ATTGCATTTA TTCCTAAAGT AGGCAGGGTA TTTCATATTG
AGCATACTCT CTTAAGACTG AGGGCATTTG GTTCCTGGGA GAATAGACAA CCCCACACTT
TAAAAATACA GACTCCAATG TCTAGTCATG GGTCAATTTA AAAAGTTGAA GAATATCCAC
TGCTGGTCAC ACTATAGGAG GCCAGGGACC ATCACATTAA AATGAGTGGG GATTTTCCAG
CCAGAGTAAA AAAAAAAAAA AAAAA
Deduced amino acid sequence: (length: 248) [FASTA format sequence]
MAGLNSLEAV RRKIQALQQQ ADEAEDRAQG LQRELDGERE RREKAEGDVA ALNRRIQLVE
EELDRAQERL ATALQKLEEA EKAADESERG MKVIESRAMK DEEKMEIQEM QLKEAKHIAE
EADRKYEEVA RKLVILEGEL ERAEERAEVS ELKCGDLEEE LKNVTNNLKS LEAASEKYSE
KEDKYEEEIK LLSDKLKEAE TRAEFAERTV AKLEKTIDDL EEKLAQAKEE NVGLHQTLDQ
TLNELNCI
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TPM4 | tropomyosin alpha-4 chain isoform 2 [Homo sapiens]. | 278 | 1e-74 | O |
|
| TPM3 | tropomyosin alpha-3 chain isoform 4 [Homo sapiens]. | 210 | 2e-54 | |
|
| TPM1 | tropomyosin alpha-1 chain isoform 6 [Homo sapiens]. | 202 | 6e-52 | O |
|
| TPM2 | tropomyosin beta chain isoform 2 [Homo sapiens]. | 182 | 8e-46 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tpm4 | tropomyosin alpha-4 chain [Mus musculus]. | 268 | 7e-72 | O |
|
| Tpm1 | tropomyosin alpha-1 chain isoform 6 [Mus musculus]. | 226 | 4e-59 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC609879 | PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis familiaris]. | 233 | 2e-61 | |
|
| TPM1 | PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 19 [Canis familiaris]. | 226 | 4e-59 | |
|
| LOC480137 | PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis familiaris]. | 202 | 8e-52 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Bos taurus]. | 233 | 2e-61 | O |
|
| TPM3 | PREDICTED: tropomyosin 4-like [Bos taurus]. | 190 | 2e-48 | |
|
| TPM3 | tropomyosin alpha-3 chain [Bos taurus]. | 174 | 1e-43 | |
|
| LOC784223 | PREDICTED: tropomyosin 4 [Bos taurus]. | 161 | 1e-39 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Sus scrofa]. | 278 | 7e-75 | O |
|
| TPM3 | tropomyosin alpha-3 chain [Sus scrofa]. | 194 | 9e-50 | O |
|
| TPM2 | tropomyosin beta chain [Sus scrofa]. | 175 | 5e-44 | |
|
| LOC100620599 | PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa]. | 173 | 2e-43 | |
|
| TPM1 | tropomyosin alpha-1 chain [Sus scrofa]. | 173 | 2e-43 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07957 | 4.1 | AAGAATATCCACTGCTGGTCACACTATAGGAGGCCAGGGACCATCACATTAAAATGAGTG |
Assembly member: TOP