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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0052_E12
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,225)
[FASTA format sequence]
ACTGAGTGGG AGCTGTGTTG ACTACCATTA CTTCTTCGTT TGTCCTCAAT TATGTCTGGG
ATGGTGGCTC TGCGGCTCCC CAGAGGCCTT TGGACAGCGG CCGTGACGGT GATGCTGGTG
GTGCTGGGTG CTCCGGTGGC TGAGGGCAGA GACTCTCCAC AGGATTTCGT GGTCCAGTTT
AAGGGCGAGT GCTACTTCTA CAACGGAACG CAGCGGGTGC GGCTCGTGGC CAGATACATC
TACAACCAGG AGGAGCATTT GCGCTTCGAC AGCGACGTGG GGGAGTTCCG GGCGGTGACC
CCGCTGGGGC GGCCGGAGGC CGACTCCTGG AACAGCCAGA AGGACGTCCT GGAGCAGAAG
CGGGCCGAGC TGGACACTGT GTGCAAACAC AACTACCAGA TAGAGGAAGG CACGACCCTG
CAGCGGCGAG TGCAACCTAC AGTGACTATC TCCCCATCCA AGGCAGAGGC TCTAAACCAC
CACAACCTGC TGGTCTGTGC GGTGACAGAT TTCTATCCAA GCCAGGTGAA AGTCCAGTGG
TTCCGGAATG GCCAGGAGGA GACAGCTGGC GTTGTGTCCA CTCCTCTTAT TAGGAACGGA
GACTGGACCT ACCAGGTGCT CGTGATGCTA GAGATGAATC TCCAGCGAGG AGATGTCTAC
ACCTGCCGCG TGGAGCACTC CAGCCTCCAG AACCCCATCT TGGTGGAGTG GCGGGCACAG
TCTGAATCTG CCCAGAGCAA GATGCTGAGC GGTGTCGGGG GCTTCGTGCT GGGGCTGATC
TTCCTCGGGC TGGGCCTTTT CATCCGTCAC AGGAGTCAGA AGGGGCTCGT GCGCTGAATC
CTGAAGATAC TTTGGGGTTG GTTTTTGCTC TTCTTAAATG CCTGTCTGTT CTTGCCTGGA
ATTCCCATAC CCCTGCCAGC TTGTTCCTCT CTGAGGTCAG ATCCTACAGT GACTCTGATG
CAGTCACGAG GGCGCTTCCT GTGATCCCCA CCTCAAGGCT CTGGCTGTGA AGCTTCTTCC
TGAACTGACC CCAGCGCCTC TGCCTGAGTG CAGCCAGCTG TGTCTACTCA GACCACAAGG
GATTTTCCTG TTCCTATTTC CCCTCAACAG ACTGTGCAAG AGAAGCACAT TGAAACCATT
TACCTGGCTA TAGAGTGCTT TTTTTAAAAT CATAATTAAA CATGATTATG AGTTAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAA
Deduced amino acid sequence: (length: 261) [FASTA format sequence]
MSGMVALRLP RGLWTAAVTV MLVVLGAPVA EGRDSPQDFV VQFKGECYFY NGTQRVRLVA
RYIYNQEEHL RFDSDVGEFR AVTPLGRPEA DSWNSQKDVL EQKRAELDTV CKHNYQIEEG
TTLQRRVQPT VTISPSKAEA LNHHNLLVCA VTDFYPSQVK VQWFRNGQEE TAGVVSTPLI
RNGDWTYQVL VMLEMNLQRG DVYTCRVEHS SLQNPILVEW RAQSESAQSK MLSGVGGFVL
GLIFLGLGLF IRHRSQKGLV R
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
BLAST on RefSeq (Human): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LOC100293977 | PREDICTED: HLA class II histocompatibility antigen, DQ beta 1 chain-like isoform 2 [Homo sapiens]. | 380 | e-105 | |
|
| HLA-DQB1 | HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]. | 377 | e-104 | |
|
| LOC100507709 | PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 1 [Homo sapiens]. | 301 | 1e-81 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]. | 324 | 8e-89 | O |
|
| H2-Eb1 | H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. | 306 | 3e-83 | |
|
| H2-Eb2 | histocompatibility 2, class II antigen E beta2 [Mus musculus]. | 256 | 3e-68 | |
|
| H2-Ob | histocompatibility 2, O region beta locus [Mus musculus]. | 250 | 2e-66 | |
|
| H2-Ea-ps | histocompatibility 2, class II antigen E alpha precursor [Mus musculus]. | 64.7 | 1e-10 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. | 383 | e-106 | O |
|
| HLA-DRB1 | DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris]. | 308 | 5e-84 | |
|
| HLA-DOB | major histocompatibility complex, class II, DO beta [Canis lupus familiaris]. | 270 | 2e-72 | O |
|
| DLA-DRA | MHC class II DR alpha chain [Canis lupus familiaris]. | 70.1 | 4e-12 | O |
|
| DLA-79 | MHC class Ib [Canis lupus familiaris]. | 61.2 | 2e-09 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LA-DQB | MHC cell surface glycoprotein [Bos taurus]. | 395 | e-110 | |
|
| BLA-DQB | boLa class II histocompatibility antigen, DQB*0101 beta chain precursor [Bos taurus]. | 391 | e-109 | |
|
| BOLA-DQB | major histocompatibility complex, class II, DQ beta [Bos taurus]. | 375 | e-104 | |
|
| BOLA-DYB | major histocompatibility complex, class II, DY beta [Bos taurus]. | 299 | 3e-81 | |
|
| DSB | MHC class II antigen DS beta [Bos taurus]. | 257 | 2e-68 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| SLA-DQB1 | SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa]. | 474 | e-134 | |
|
| SLA-DRB1 | MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa]. | 306 | 2e-83 | |
|
| LOC100513292 | PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. | 289 | 3e-78 | |
|
| LOC100519552 | PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. | 281 | 4e-76 | |
|
| LOC100624987 | PREDICTED: h-2 class II histocompatibility antigen, E-S beta chain-like, partial [Sus scrofa]. | 68.9 | 5e-12 | |
Oligo-microarray probe: TOP
Probe ID | Rel. | Probe sequence |
---|
AGPOA4-09633 | 4.1 | CAACAGACTGTGCAAGAGAAGCACATTGAAACCATTTACCTGGCTATAGAGTGCTTTTTT |
Assembly member: TOP