[Help]

[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  OVRM1_0052_E12

Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)

Nucleotide sequence:   (length: 1,225)  [FASTA format sequence]
ACTGAGTGGG AGCTGTGTTG ACTACCATTA CTTCTTCGTT TGTCCTCAAT TATGTCTGGG
ATGGTGGCTC TGCGGCTCCC CAGAGGCCTT TGGACAGCGG CCGTGACGGT GATGCTGGTG
GTGCTGGGTG CTCCGGTGGC TGAGGGCAGA GACTCTCCAC AGGATTTCGT GGTCCAGTTT
AAGGGCGAGT GCTACTTCTA CAACGGAACG CAGCGGGTGC GGCTCGTGGC CAGATACATC
TACAACCAGG AGGAGCATTT GCGCTTCGAC AGCGACGTGG GGGAGTTCCG GGCGGTGACC
CCGCTGGGGC GGCCGGAGGC CGACTCCTGG AACAGCCAGA AGGACGTCCT GGAGCAGAAG
CGGGCCGAGC TGGACACTGT GTGCAAACAC AACTACCAGA TAGAGGAAGG CACGACCCTG
CAGCGGCGAG TGCAACCTAC AGTGACTATC TCCCCATCCA AGGCAGAGGC TCTAAACCAC
CACAACCTGC TGGTCTGTGC GGTGACAGAT TTCTATCCAA GCCAGGTGAA AGTCCAGTGG
TTCCGGAATG GCCAGGAGGA GACAGCTGGC GTTGTGTCCA CTCCTCTTAT TAGGAACGGA
GACTGGACCT ACCAGGTGCT CGTGATGCTA GAGATGAATC TCCAGCGAGG AGATGTCTAC
ACCTGCCGCG TGGAGCACTC CAGCCTCCAG AACCCCATCT TGGTGGAGTG GCGGGCACAG
TCTGAATCTG CCCAGAGCAA GATGCTGAGC GGTGTCGGGG GCTTCGTGCT GGGGCTGATC
TTCCTCGGGC TGGGCCTTTT CATCCGTCAC AGGAGTCAGA AGGGGCTCGT GCGCTGAATC
CTGAAGATAC TTTGGGGTTG GTTTTTGCTC TTCTTAAATG CCTGTCTGTT CTTGCCTGGA
ATTCCCATAC CCCTGCCAGC TTGTTCCTCT CTGAGGTCAG ATCCTACAGT GACTCTGATG
CAGTCACGAG GGCGCTTCCT GTGATCCCCA CCTCAAGGCT CTGGCTGTGA AGCTTCTTCC
TGAACTGACC CCAGCGCCTC TGCCTGAGTG CAGCCAGCTG TGTCTACTCA GACCACAAGG
GATTTTCCTG TTCCTATTTC CCCTCAACAG ACTGTGCAAG AGAAGCACAT TGAAACCATT
TACCTGGCTA TAGAGTGCTT TTTTTAAAAT CATAATTAAA CATGATTATG AGTTAAAAAA
AAAAAAAAAA AAAAAAAAAA AAAAA

Deduced amino acid sequence:  (length: 261) [FASTA format sequence]
MSGMVALRLP RGLWTAAVTV MLVVLGAPVA EGRDSPQDFV VQFKGECYFY NGTQRVRLVA
RYIYNQEEHL RFDSDVGEFR AVTPLGRPEA DSWNSQKDVL EQKRAELDTV CKHNYQIEEG
TTLQRRVQPT VTISPSKAEA LNHHNLLVCA VTDFYPSQVK VQWFRNGQEE TAGVVSTPLI
RNGDWTYQVL VMLEMNLQRG DVYTCRVEHS SLQNPILVEW RAQSESAQSK MLSGVGGFVL
GLIFLGLGLF IRHRSQKGLV R


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100293977PREDICTED: HLA class II histocompatibility antigen, DQ beta 1 chain-like isoform 2 [Homo sapiens]. 380e-105
Contig/Assembly ProteinHLA-DQB1HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]. 377e-104
Contig/Assembly ProteinLOC100507709PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 1 [Homo sapiens]. 3011e-81


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]. 3248e-89O
Contig/Assembly ProteinH2-Eb1H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. 3063e-83
Contig/Assembly ProteinH2-Eb2histocompatibility 2, class II antigen E beta2 [Mus musculus]. 2563e-68
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus [Mus musculus]. 2502e-66
Contig/Assembly ProteinH2-Ea-pshistocompatibility 2, class II antigen E alpha precursor [Mus musculus]. 64.71e-10


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DQB1major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. 383e-106O
Contig/Assembly ProteinHLA-DRB1DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris]. 3085e-84
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta [Canis lupus familiaris]. 2702e-72O
Contig/Assembly ProteinDLA-DRAMHC class II DR alpha chain [Canis lupus familiaris]. 70.14e-12O
Contig/Assembly ProteinDLA-79MHC class Ib [Canis lupus familiaris]. 61.22e-09


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLA-DQBMHC cell surface glycoprotein [Bos taurus]. 395e-110
Contig/Assembly ProteinBLA-DQBboLa class II histocompatibility antigen, DQB*0101 beta chain precursor [Bos taurus]. 391e-109
Contig/Assembly ProteinBOLA-DQBmajor histocompatibility complex, class II, DQ beta [Bos taurus]. 375e-104
Contig/Assembly ProteinBOLA-DYBmajor histocompatibility complex, class II, DY beta [Bos taurus]. 2993e-81
Contig/Assembly ProteinDSBMHC class II antigen DS beta [Bos taurus]. 2572e-68


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLA-DQB1SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa]. 474e-134
Contig/Assembly ProteinSLA-DRB1MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa]. 3062e-83
Contig/Assembly ProteinLOC100513292PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 2893e-78
Contig/Assembly ProteinLOC100519552PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 2814e-76
Contig/Assembly ProteinLOC100624987PREDICTED: h-2 class II histocompatibility antigen, E-S beta chain-like, partial [Sus scrofa]. 68.95e-12


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-096334.1CAACAGACTGTGCAAGAGAAGCACATTGAAACCATTTACCTGGCTATAGAGTGCTTTTTT


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003053120030531C-0000702fwd
2003082620030826C-0034433fwd
2004020420040204C-0037613fwd
2005032220050322C-0002103fwd
2006061120060611C-0001803fwd
2007080620070806C-0003053fwd
2008051520080515C-0005763fwd
2010100120101001C-0111383fwd
2011060120110601C-0018433fwd