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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0055_H01
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 2,008)
[FASTA format sequence]
GACGCTGTCC TCGCGGCGCC GCCGGCCGGC CGGAGCCTCC TCCACCGAGG GGACCCCGCA
ACCGCGGCGC CCGGGTGGCA GCGATCCCGC CACAGCCTCC CCGAGGGCCC GTCCGGAGCC
GGGGCGGGGC GGGGCGCCCT CCGCAACCAC GTGTGCCCGC CTCGCAGCGC TGCGCGCCCG
CCGCCTTTCC CGGGCTCGCC CGCGGCCCGG CCGGAGCGCC TCGCCGGAGG TTTGTCCCCG
CTCGCTCGCC GTAGCGCGCG GCCCCGCGGA GCGCAGGGCG CGCGGCCGAC ATGGGCGAGA
CCATATCCCG GAGGCTCTGG TTCCAGGGGG ACTGGGACGC GGAAATGGAA GAGCGGGCGT
TCCCCAACCC TTTCCCGGAC TACGAGGCCG CGGCCGCCGT GCCGGCGGAG GAGCCGCCAT
GTGCTCGCCC TGCGCTCACC CCGGAGGAGC TCGGCCTCCC TTTCCACAGC GACGGGAAGA
TCATTCATAA TTTCACAAGG CGGATCCAGA GCAAAATCAA AGATCTACTA CAGCAGATGG
AAGAAGGGCT GAAGACAGCT GATCCGCACG ATTGCTCTGC TTACACGGGT TGGACAGGCA
TAGCCCTTTT GTACCTTCAG TTGTACCGGG TCACATGTGA CCAGAACTAT CTGCTCCGAT
CCCTGGATTA CGTAAAAAGA ACACTTCGGA ATCTGAACGG CCGGAGGGTC ACTTTCCTCT
GTGGAGATGC CGGGCCCCTG GCCGTCGGAG CTGTGGTGTA TCACAAACTC AAAAGTGATG
GCGAGTCCCA GGAATGCATC ACAAAACTCC TGCAGCTCCA GAGAACCATC GTCTGCCGCG
ACTCGGACCT TCCCGATGAG CTGCTTTTCG GCCGCGCGGG CTACCTGTAC GCCTTGCTCT
ATGTGAACAC GGAGATGGGT CCGGGCGCCG TGTGCGAATC AGCCATCAAA GAGGTGGTCG
ATGCTATTAT TGAATCGGGC AAGACTTTGT CAAAGGAAGA AAGGAAGGCC GAGCGCTGCC
CCCTGTTGTA CCAGTGGCAC AGGAAGCAGT ACGTCGGAGC CGCCCACGGC ATGGCTGGGA
TCTACTACAT GCTAATGCAG CCAGCAGCAA AAGTGGACCA AGAAACCTTG ACAGAGATGG
TGAAGCCTAG TATTGACTAC ATGCGCCACA AAAGGTTCCG ATCCGGAAAC TACCCATCCT
CGTTAAGCAA CGAGACAGAC CGCCTGGTAC ACTGGTGCCA CGGGGCGCCC GGCGTCATCC
ACACGCTCAT GCAGGCGTAC AAGGTGTTTA AGGAGGAGAA GTACCTGAGG GACGCCGTGG
AGTGCAGCGA CGTGATTTGG CAGCGGGGCC TGCTGCGCAA GGGCTACGGC ATCTGCCACG
GGACTGCGGG CAACGGCTAC TCCTTCCTCT CCCTTTACCG CCTCACGCAG GACAAGAAGT
ACCTCTACCG AGCTTGCAAG TTTGCAGAGT GGTGTCTGGA GTACGGAGCA CATGGTTGCC
GCATTCCCGA CAGGCCCTAC TCTCTCTTCG AAGGCATGGC CGGCGCCATT CACTTCCTCT
CCGACATCCT GGCCCCCGAG ACAGCACGGT TTCCAGCATT TGAACTCGGC TCTTCAGAGA
GGGATCCAAA GGTGCAAAAA GACTCCTAAG GGACCCGACG GGACCACAGG CCGCCAGGTT
GCCTGGCGCC TGACACAGAA GCCACCGTGC ATCCCGAGGA AGGGAGGACG GAGGGAGCAG
AGCCCCGCAG ACCCCCGCCC CGCCAGCCTG CTGTGACCGT GCTCCCCTCG CTGGTGTCAG
CGTGACGTCT CCGTGTCCAG TGCTGCGTAA TGTTTGCATG TCCCTCGGTG TTTGCTCTCC
GTAGGCGTAG GTTGTTCTCA GCGGAAGCCC TTCTCTGTCC ATGAGCCCGA GCTGGCCGTG
CATGAGGGCA CACGGCAGCC CCTTCTCCGT ACCCAATAAA GCGGGGTGCT TCTGTGTTGG
CAGACAGGAA AAAAAAAAAA AAAAAAAA
Deduced amino acid sequence: (length: 452) [FASTA format sequence]
MGETISRRLW FQGDWDAEME ERAFPNPFPD YEAAAAVPAE EPPCARPALT PEELGLPFHS
DGKIIHNFTR RIQSKIKDLL QQMEEGLKTA DPHDCSAYTG WTGIALLYLQ LYRVTCDQNY
LLRSLDYVKR TLRNLNGRRV TFLCGDAGPL AVGAVVYHKL KSDGESQECI TKLLQLQRTI
VCRDSDLPDE LLFGRAGYLY ALLYVNTEMG PGAVCESAIK EVVDAIIESG KTLSKEERKA
ERCPLLYQWH RKQYVGAAHG MAGIYYMLMQ PAAKVDQETL TEMVKPSIDY MRHKRFRSGN
YPSSLSNETD RLVHWCHGAP GVIHTLMQAY KVFKEEKYLR DAVECSDVIW QRGLLRKGYG
ICHGTAGNGY SFLSLYRLTQ DKKYLYRACK FAEWCLEYGA HGCRIPDRPY SLFEGMAGAI
HFLSDILAPE TARFPAFELG SSERDPKVQK DS
SNP mapping information
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | LANCL2 | lanC-like protein 2 [Homo sapiens]. | 795 | 0.0 | O |
|
| LANCL1 | lanC-like protein 1 [Homo sapiens]. | 487 | e-137 | O |
|
| LANCL3 | lanC-like protein 3 isoform 2 [Homo sapiens]. | 207 | 2e-53 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Lancl2 | lanC-like protein 2 [Mus musculus]. | 764 | 0.0 | O |
|
| Lancl1 | lanC-like protein 1 [Mus musculus]. | 485 | e-137 | |
|
| Lancl3 | lanC-like protein 3 [Mus musculus]. | 207 | 2e-53 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC483240 | PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin sensitivity protein) [Canis familiaris]. | 755 | 0.0 | O |
|
| LOC478897 | PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte membrane protein) (p40) [Canis familiaris]. | 484 | e-136 | O |
|
| LOC491823 | PREDICTED: similar to LanC lantibiotic synthetase component C-like 3 [Canis familiaris]. | 209 | 6e-54 | O |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LANCL2 | lanC-like protein 2 [Bos taurus]. | 816 | 0.0 | O |
|
| LANCL1 | lanC-like protein 1 [Bos taurus]. | 488 | e-137 | O |
|
| LANCL3 | lanC-like protein 3 [Bos taurus]. | 209 | 7e-54 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC100620078 | PREDICTED: lanC-like protein 2-like, partial [Sus scrofa]. | 783 | 0.0 | |
|
| LOC100153701 | PREDICTED: lanC-like protein 1 [Sus scrofa]. | 463 | e-130 | |
|
| LOC100626898 | PREDICTED: lanC-like protein 3-like [Sus scrofa]. | 186 | 4e-47 | |
|
| LOC100625232 | PREDICTED: lanC-like protein 1-like [Sus scrofa]. | 104 | 2e-22 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-12535 | 4.1 | TTTCCAGCATTTGAACTCGGCTCTTCAGAGAGGGATCCAAAGGTGCAAAAAGACTCCTAA |
Assembly member: TOP