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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0071_C04
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,404)
[FASTA format sequence]
ACTCACTCGA CACCGACGCC GCTGCCGCCG TAGGCCCCTC CACGCCCACA CCCCCTACCC
ACTGCCCAGC CATGGAGGCC ATCAAGAAGA AGATGCAGAT GCTGAAGCTG GACAAGGAGA
ACGCCATCGA CCGGGCCGAG CAGGCGGAGT CGGATAAGAA AGCTGCTGAG GAGAAGTGCA
AGCAGGTGGA GGAGGAGCTG ACGCACCTCC AGAAGAAGCT GAAGGGGACA GAGGATGAGC
TGGACAAATA CTCCGAGAAC CTGAAGGACG CGCAGGAAAA GCTGGAGTTG AGCGAGAAGA
AAGCCTCCGA CGCCGAAGGG GATGTAGCAG CTCTCAATCG GCGCATCCAA CTCGTTGAGG
AGGAGTTGGA CAGGGCTCAG GAACGACTGG CCACAGCCCT GCAGAAGCTT GAGGAGGCAG
AAAAGGCTGC AGATGAGAGC GAGAGAGGAA TGAAGGTGAT AGAAAACCGG GCCATGAAAG
ATGAGGAGAA GATGGAGATT CAGGAGATGC AGCTCAAAGA GGCCAAGCAC ATTGCCGAGG
AGGCCGACCG CAAATACGAG GAGGTAGCTC GTAAGTTGGT CATCCTGGAG GGCGAGCTGG
AGAGGGCAGA GGAGCGTGCC GAGGTGTCTG AACTAAAATG TGGTGACCTG GAAGAAGAAC
TCAAGAATGT CACCAACAAC CTGAAGTCGC TAGAGGCTGC ATCTGAAAAG TATTCTGAAA
AGGAGGATAA ATATGAAGAA GAGATTAAAC TTCTGTCTGA CAAACTGAAA GAGGCTGAGA
CCCGTGCTGA ATTTGCAGAG AGAACAGTTG CAAAACTGGA AAAGGCCATC GATGACCTGG
AAGAAAAACT TGCCCAGGCC AAAGAAGAGA ACGTGGGCTT ACATCAGACA CTGGATCAGA
CACTAAACGA ACTAAACTGT ATATAACCAA AACAGAAGAG TCTCGTTCCA TCAGAAACTC
CAGAGCTACG TGTTTTTCTC TTCTCTTGTA AGAAGTTTCT TTTGTTATTG CCTCTTTGCT
TTGCTGGAAA TGTCAAGCAA ATTATGAATA CGTGACCAAG TATTTTGTAT CAGAAAAGCT
TTGAGCACCA GTTAAATCTA TTCCTTCCTT TTTTTCAAGT GGCACCAGCT TTTTCAGCTC
TATTTTTATC CTTAAATTGC ATTTATTCCT AAAGTAGGCA GGGTATTTCA TATTGAGCAT
ACTCTCTTAA GACTGAGGGC ATTTGGTTCC TGGGAGAATA GACAACCCCA CACTTTAAAA
ATACAGACTC CAATGTCTAG TCATGGGTCA ATTTAAAAAG TTGAAGAATA TCCACTGCTG
GTCACACTAT AGGAGGCCAG GGACCATCAC ATTAAAATGA GTGGGGATTT TCCAGCCAGA
GTAAAAAAAA AAAAAAAAAA AAAA
Deduced amino acid sequence: (length: 284) [FASTA format sequence]
MEAIKKKMQM LKLDKENAID RAEQAESDKK AAEEKCKQVE EELTHLQKKL KGTEDELDKY
SENLKDAQEK LELSEKKASD AEGDVAALNR RIQLVEEELD RAQERLATAL QKLEEAEKAA
DESERGMKVI ENRAMKDEEK MEIQEMQLKE AKHIAEEADR KYEEVARKLV ILEGELERAE
ERAEVSELKC GDLEEELKNV TNNLKSLEAA SEKYSEKEDK YEEEIKLLSD KLKEAETRAE
FAERTVAKLE KAIDDLEEKL AQAKEENVGL HQTLDQTLNE LNCI
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TPM4 | tropomyosin alpha-4 chain isoform 1 [Homo sapiens]. | 377 | e-104 | |
|
| TPM1 | tropomyosin alpha-1 chain isoform 3 [Homo sapiens]. | 322 | 5e-88 | |
|
| TPM2 | tropomyosin beta chain isoform 2 [Homo sapiens]. | 302 | 4e-82 | O |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tpm1 | tropomyosin alpha-1 chain isoform 3 [Mus musculus]. | 322 | 4e-88 | O |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC609879 | PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis familiaris]. | 381 | e-106 | O |
|
| TPM1 | PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis familiaris]. | 323 | 3e-88 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Bos taurus]. | 378 | e-105 | O |
|
| TPM3 | tropomyosin alpha-3 chain [Bos taurus]. | 297 | 2e-80 | O |
|
| TPM1 | tropomyosin alpha-1 chain [Bos taurus]. | 296 | 2e-80 | O |
|
| TPM2 | tropomyosin beta chain [Bos taurus]. | 278 | 1e-74 | O |
|
| LOC784223 | PREDICTED: tropomyosin 4 [Bos taurus]. | 154 | 2e-37 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM2 | tropomyosin beta chain [Sus scrofa]. | 297 | 8e-81 | |
|
| LOC100620599 | PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa]. | 296 | 2e-80 | |
|
| TPM1 | tropomyosin alpha-1 chain [Sus scrofa]. | 292 | 3e-79 | |
|
| TPM4 | tropomyosin alpha-4 chain [Sus scrofa]. | 241 | 5e-64 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07957 | 4.1 | AAGAATATCCACTGCTGGTCACACTATAGGAGGCCAGGGACCATCACATTAAAATGAGTG |
Assembly member: TOP