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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0081_C10
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,884)
[FASTA format sequence]
GCCAGTATCC TTTTCGCCCC TGGATCGTGT TCTGCTGCAC CCCGCACCCC TCATCCCGGC
CCCTCGTCCC AGTCCCTGCT TTCCAGCCCG GCCCCTGCCC CGCCCTGACC CAAACCGGCC
CAGACGCCAT GGAGAGCTGG CCCTGGCCGT CGGGCGGCGC CTGGCTGCTC GTGGCGGCCC
GTGCGCTGCT GCAGCTGCTG CGCGCAGACC TGCGTCTGGG CCGCCCGCTG CTGGCGGCGC
TGGCGCTTCT GGCCGCGCTC GACTGGCTGT GCCAGCGCCT GCTGCCCCCG CTGGCCGCAC
TTGTCGTGCT GGCTGCCGCG GGTTGGATCG CGTTGTCCCG CTTGGCGCGG CCGCAACGCC
TGCCGGTGGC GACTCGCGCG GTGCTCATCA CCGGCTGTGA CTCTGGTTTT GGCAAAGCGA
CTGCCAAGAA GCTGGACGCC ATGGGCTTCA CAGTGCTGGC CACCGTGTTG GAGTTGGATA
GCCCTGGTGC CCAAGAGCTG CGTGCTTGCT GTTCCCCTCG TCTGAAGTTG CTGCAGATGG
ACCTGACCAA GCCAGCAGAC ATTAGCCGCG TGCGGGAGTT CACCAAGGTC CACACTGCCA
GCACAGGTCT GTGGGGCCTG GTCAACAATG CAGGCCACAA CATCCTTGTG GCAGATGCAG
AGCTGTCTCC AGTGGCCACG TACCGCAGCT GCATGGAGGT GAATTTTTTT GGTACCCTTG
AGATGACCAA AGCCCTCTTG CCACTGCTGC GCCGGTCGAG CGGTCGCATT GTGACTGTGA
GCAGTCCAGC AGGAGATATG CCATTTCCGT GCTTGTCTGC CTACGGGACC TCCAAAGCGG
CTGTGGCATT GCTCATGGAC TCTTTCAGCT GTGAACTTCA GCCCTGGGGG GTCAAGGTCA
GCGTCATCCA GCCTGCCTGC TTCAGGACGG AGGCAGTGAA AAACGTGGAC CAGTGGGAAG
AGCGCAAGCG GCAGCTGCTG GCCACTCTGC CCCAAGAGCT GCTACAGGCC TATGGTGAGG
ACTACATCGA GCACTTGAAT GGGCAATTTC TGCACTCTCT GAGCCAGGGG CTGCCAGACC
TCAGCCCGGT TGTAGATGCC ATCACTGACG CACTGCTGGC GGCTAAGCCG CGCCACCGCT
ATTACCCTGG CCATGGCCTG GGGCTCATGT ACTTCATCCA CTACTACCTG CCAGAGGGCC
TGCGACGCCG TTTCCTGCAG TCCTTCTTCA TCAGTCCCTA TGTGCCAAGA GCACTGAGGC
TTGGCCAGCC CAGCCATACC TCTGCCCAGG ATCCAGGCCC AAACCTGGGC TCTGCCCCCA
CCGCTCAATG AGCAGCGCGC ACATAGAGCG CCTCCATCAG AGGAGGTCCC ATGTCCTTGG
CCCTCCCTGG GCATTCTATC CCTCAGGTCT GCCCTAGAGC CTGGCCTAAA GGATCCCAAC
CCCACTCACT GCTGATGTCA CAGGCCAGGC CTGGTGAGGC GAAAGCTTCC CACTGAACCT
CCAGGCCTTC ACTGCTTCAT GAGCCCAAAC AGACCCTCCT GGGCACAAGG CTCCACCATG
CAGCTTGTTG AACCCAGCTG GATGGGGAGT TTAGTGCAAG ACTTAGCTGT AGCCTTTGAC
AGGATCCTGC AGACTGCCTC TACAAACTAA GGAGTGACTA GGTAGGTTGG GGACCTCCTC
AGGATTCTTT CTCGGCACCA GTGCCTCAGT GCCGTGATTT GAAGGGTGAA TTCCAACTGT
TTCTTGACTG GCTCAAGAAT GAGGGTCCTG ACCATCCACC CCAAGCTCCA CAAGCCACAG
GGACGCTGCA TACCTACTTG CCTGGTTGCC ACTTTTTAAA TAAAGACAAA TTTTTATTTC
TCCTAAAAAA AAAAAAAAAA AAAA
Deduced amino acid sequence: (length: 400) [FASTA format sequence]
MESWPWPSGG AWLLVAARAL LQLLRADLRL GRPLLAALAL LAALDWLCQR LLPPLAALVV
LAAAGWIALS RLARPQRLPV ATRAVLITGC DSGFGKATAK KLDAMGFTVL ATVLELDSPG
AQELRACCSP RLKLLQMDLT KPADISRVRE FTKVHTASTG LWGLVNNAGH NILVADAELS
PVATYRSCME VNFFGTLEMT KALLPLLRRS SGRIVTVSSP AGDMPFPCLS AYGTSKAAVA
LLMDSFSCEL QPWGVKVSVI QPACFRTEAV KNVDQWEERK RQLLATLPQE LLQAYGEDYI
EHLNGQFLHS LSQGLPDLSP VVDAITDALL AAKPRHRYYP GHGLGLMYFI HYYLPEGLRR
RFLQSFFISP YVPRALRLGQ PSHTSAQDPG PNLGSAPTAQ
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
BLAST on RefSeq (Human): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| HSD11B2 | corticosteroid 11-beta-dehydrogenase isozyme 2 [Homo sapiens]. | 578 | e-165 | O |
|
| HSD17B2 | estradiol 17-beta-dehydrogenase 2 [Homo sapiens]. | 240 | 4e-63 | |
|
| BDH1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo sapiens]. | 173 | 6e-43 | O |
|
| DHRS9 | dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens]. | 154 | 4e-37 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| Hsd11b2 | corticosteroid 11-beta-dehydrogenase isozyme 2 [Mus musculus]. | 542 | e-154 | O |
|
| Hsd17b2 | estradiol 17-beta-dehydrogenase 2 [Mus musculus]. | 239 | 7e-63 | |
|
| Bdh1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Mus musculus]. | 159 | 5e-39 | |
|
| Rdh1 | retinol dehydrogenase 1 (all trans) [Mus musculus]. | 150 | 4e-36 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| HSD11B2 | PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris]. | 516 | e-146 | O |
|
| LOC489690 | PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis familiaris]. | 218 | 2e-56 | |
|
| LOC488037 | PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor [Canis familiaris]. | 172 | 1e-42 | |
|
| LOC481099 | PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH) [Canis familiaris]. | 159 | 7e-39 | |
|
| LOC488391 | PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase [Canis familiaris]. | 146 | 6e-35 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| HSD11B2 | corticosteroid 11-beta-dehydrogenase isozyme 2 [Bos taurus]. | 607 | e-173 | O |
|
| HSD17B2 | estradiol 17-beta-dehydrogenase 2 [Bos taurus]. | 221 | 2e-57 | |
|
| BDH1 | D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Bos taurus]. | 173 | 5e-43 | |
|
| HSD17B6 | 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus]. | 160 | 4e-39 | |
|
| HSD17B1 | PREDICTED: hydroxysteroid (17-beta) dehydrogenase 1-like [Bos taurus]. | 84 | 4e-16 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| HSD11B2 | corticosteroid 11-beta-dehydrogenase isozyme 2 [Sus scrofa]. | 692 | 0.0 | O |
|
| HSD17B2 | estradiol 17-beta-dehydrogenase 2 [Sus scrofa]. | 209 | 4e-54 | |
|
| LOC100620470 | PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform 2 [Sus scrofa]. | 164 | 2e-40 | |
|
| LOC100626199 | PREDICTED: retinol dehydrogenase 16-like isoform 2 [Sus scrofa]. | 144 | 1e-34 | |
Oligo-microarray probe: TOP
Probe ID | Rel. | Probe sequence |
---|
AGPOA4-06707 | 4.1 | GCTGCATACCTACTTGCCTGGTTGCCACTTTTTAAATAAAGACAAATTTTTATTTCTCCT |
Assembly member: TOP