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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  OVRM1_0081_C10

Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)

Nucleotide sequence:   (length: 1,884)  [FASTA format sequence]
GCCAGTATCC TTTTCGCCCC TGGATCGTGT TCTGCTGCAC CCCGCACCCC TCATCCCGGC
CCCTCGTCCC AGTCCCTGCT TTCCAGCCCG GCCCCTGCCC CGCCCTGACC CAAACCGGCC
CAGACGCC
AT GGAGAGCTGG CCCTGGCCGT CGGGCGGCGC CTGGCTGCTC GTGGCGGCCC
GTGCGCTGCT GCAGCTGCTG CGCGCAGACC TGCGTCTGGG CCGCCCGCTG CTGGCGGCGC
TGGCGCTTCT GGCCGCGCTC GACTGGCTGT GCCAGCGCCT GCTGCCCCCG CTGGCCGCAC
TTGTCGTGCT GGCTGCCGCG GGTTGGATCG CGTTGTCCCG CTTGGCGCGG CCGCAACGCC
TGCCGGTGGC GACTCGCGCG GTGCTCATCA CCGGCTGTGA CTCTGGTTTT GGCAAAGCGA
CTGCCAAGAA GCTGGACGCC ATGGGCTTCA CAGTGCTGGC CACCGTGTTG GAGTTGGATA
GCCCTGGTGC CCAAGAGCTG CGTGCTTGCT GTTCCCCTCG TCTGAAGTTG CTGCAGATGG
ACCTGACCAA GCCAGCAGAC ATTAGCCGCG TGCGGGAGTT CACCAAGGTC CACACTGCCA
GCACAGGTCT GTGGGGCCTG GTCAACAATG CAGGCCACAA CATCCTTGTG GCAGATGCAG
AGCTGTCTCC AGTGGCCACG TACCGCAGCT GCATGGAGGT GAATTTTTTT GGTACCCTTG
AGATGACCAA AGCCCTCTTG CCACTGCTGC GCCGGTCGAG CGGTCGCATT GTGACTGTGA
GCAGTCCAGC AGGAGATATG CCATTTCCGT GCTTGTCTGC CTACGGGACC TCCAAAGCGG
CTGTGGCATT GCTCATGGAC TCTTTCAGCT GTGAACTTCA GCCCTGGGGG GTCAAGGTCA
GCGTCATCCA GCCTGCCTGC TTCAGGACGG AGGCAGTGAA AAACGTGGAC CAGTGGGAAG
AGCGCAAGCG GCAGCTGCTG GCCACTCTGC CCCAAGAGCT GCTACAGGCC TATGGTGAGG
ACTACATCGA GCACTTGAAT GGGCAATTTC TGCACTCTCT GAGCCAGGGG CTGCCAGACC
TCAGCCCGGT TGTAGATGCC ATCACTGACG CACTGCTGGC GGCTAAGCCG CGCCACCGCT
ATTACCCTGG CCATGGCCTG GGGCTCATGT ACTTCATCCA CTACTACCTG CCAGAGGGCC
TGCGACGCCG TTTCCTGCAG TCCTTCTTCA TCAGTCCCTA TGTGCCAAGA GCACTGAGGC
TTGGCCAGCC CAGCCATACC TCTGCCCAGG ATCCAGGCCC AAACCTGGGC TCTGCCCCCA
CCGCTCAATG AGCAGCGCGC ACATAGAGCG CCTCCATCAG AGGAGGTCCC ATGTCCTTGG
CCCTCCCTGG GCATTCTATC CCTCAGGTCT GCCCTAGAGC CTGGCCTAAA GGATCCCAAC
CCCACTCACT GCTGATGTCA CAGGCCAGGC CTGGTGAGGC GAAAGCTTCC CACTGAACCT
CCAGGCCTTC ACTGCTTCAT GAGCCCAAAC AGACCCTCCT GGGCACAAGG CTCCACCATG
CAGCTTGTTG AACCCAGCTG GATGGGGAGT TTAGTGCAAG ACTTAGCTGT AGCCTTTGAC
AGGATCCTGC AGACTGCCTC TACAAACTAA GGAGTGACTA GGTAGGTTGG GGACCTCCTC
AGGATTCTTT CTCGGCACCA GTGCCTCAGT GCCGTGATTT GAAGGGTGAA TTCCAACTGT
TTCTTGACTG GCTCAAGAAT GAGGGTCCTG ACCATCCACC CCAAGCTCCA CAAGCCACAG
GGACGCTGCA TACCTACTTG CCTGGTTGCC ACTTTTTAAA TAAAGACAAA TTTTTATTTC
TCCTAAAAAA AAAAAAAAAA AAAA

Deduced amino acid sequence:  (length: 400) [FASTA format sequence]
MESWPWPSGG AWLLVAARAL LQLLRADLRL GRPLLAALAL LAALDWLCQR LLPPLAALVV
LAAAGWIALS RLARPQRLPV ATRAVLITGC DSGFGKATAK KLDAMGFTVL ATVLELDSPG
AQELRACCSP RLKLLQMDLT KPADISRVRE FTKVHTASTG LWGLVNNAGH NILVADAELS
PVATYRSCME VNFFGTLEMT KALLPLLRRS SGRIVTVSSP AGDMPFPCLS AYGTSKAAVA
LLMDSFSCEL QPWGVKVSVI QPACFRTEAV KNVDQWEERK RQLLATLPQE LLQAYGEDYI
EHLNGQFLHS LSQGLPDLSP VVDAITDALL AAKPRHRYYP GHGLGLMYFI HYYLPEGLRR
RFLQSFFISP YVPRALRLGQ PSHTSAQDPG PNLGSAPTAQ


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHSD11B2corticosteroid 11-beta-dehydrogenase isozyme 2 [Homo sapiens]. 578e-165O
Contig/Assembly ProteinHSD17B2estradiol 17-beta-dehydrogenase 2 [Homo sapiens]. 2404e-63
Contig/Assembly ProteinBDH1D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo sapiens]. 1736e-43O
Contig/Assembly ProteinDHRS9dehydrogenase/reductase SDR family member 9 precursor [Homo sapiens]. 1544e-37


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHsd11b2corticosteroid 11-beta-dehydrogenase isozyme 2 [Mus musculus]. 542e-154O
Contig/Assembly ProteinHsd17b2estradiol 17-beta-dehydrogenase 2 [Mus musculus]. 2397e-63
Contig/Assembly ProteinBdh1D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Mus musculus]. 1595e-39
Contig/Assembly ProteinRdh1retinol dehydrogenase 1 (all trans) [Mus musculus]. 1504e-36


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHSD11B2PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris]. 516e-146O
Contig/Assembly ProteinLOC489690PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis familiaris]. 2182e-56
Contig/Assembly ProteinLOC488037PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor [Canis familiaris]. 1721e-42
Contig/Assembly ProteinLOC481099PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH) [Canis familiaris]. 1597e-39
Contig/Assembly ProteinLOC488391PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase [Canis familiaris]. 1466e-35


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHSD11B2corticosteroid 11-beta-dehydrogenase isozyme 2 [Bos taurus]. 607e-173O
Contig/Assembly ProteinHSD17B2estradiol 17-beta-dehydrogenase 2 [Bos taurus]. 2212e-57
Contig/Assembly ProteinBDH1D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Bos taurus]. 1735e-43
Contig/Assembly ProteinHSD17B617-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus]. 1604e-39
Contig/Assembly ProteinHSD17B1PREDICTED: hydroxysteroid (17-beta) dehydrogenase 1-like [Bos taurus]. 844e-16


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHSD11B2corticosteroid 11-beta-dehydrogenase isozyme 2 [Sus scrofa]. 6920.0O
Contig/Assembly ProteinHSD17B2estradiol 17-beta-dehydrogenase 2 [Sus scrofa]. 2094e-54
Contig/Assembly ProteinLOC100620470PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform 2 [Sus scrofa]. 1642e-40
Contig/Assembly ProteinLOC100626199PREDICTED: retinol dehydrogenase 16-like isoform 2 [Sus scrofa]. 1441e-34


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-067074.1GCTGCATACCTACTTGCCTGGTTGCCACTTTTTAAATAAAGACAAATTTTTATTTCTCCT


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003053120030531S-0142041fwd
2003082620030826C-0025872fwd
2005032220050322C-0025334fwd
2006061120060611C-0019087fwd
2007080620070806C-0021177fwd
2008051520080515C-00210224fwd
2010100120101001C-00185765fwd
2011060120110601C-00740265fwd