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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0086_C09
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 3,389)
[FASTA format sequence]
GAGTGCGGTG CTGCAATGGC GGAATCATCT GAGTCCTTCA CGGTGGCGTC CAGCCCTGCC
CCGCGTCGCC GAGGCAGTGA TCCTCTCACC TCCAGCCCTG GGCGAAGCTC TAGGCGCACG
GATGCCCTGA CCTCCAGCCC TGGCCGAGAC CTTCCTCCTT TTGAGGATGA GTCAGAGGGA
CTGCTCGGCA CGGAGGGACC CTTGGAGGAG GAGGAAGAGG ATGGAGAGGA GCTTATCGGA
GATGGCATGG AGAGGGACTA CCGTGCCATC CCGGAGCTTG ATGTCTACGA GCCGGAGGGG
CTGGCGCTGG ACGACGAGGA CGTGGAGGAG CTGACCGCCA GTCAGAGGGA GGCTGCCGAG
CGGGCCATGC GGCAGCGCGA CCGGGAGGCG GGCCGGGGCC TGGGCCGCAT GCGCCGCGGG
CTCTTGTACG ACAGTGATGA GGAGGAGGAG GAGCGCCCCA GCCGCAAGCG GCGCCAGGTG
GAGCGGGCCA CAGAGGACGG CGAGGAGGAC GAGGAGATGA TCGAGAGCAT CGAGAACCTG
GAGGACCTGA AGGGCCACTC GGTGCGTGAG TGGGTGAGCA TGGCCGGCCC GCGGCTGGAG
ATCCACCACC GCTTCAAGAA CTTCCTGCGC ACTCATGTGG ACGGCCACGG CCACAATGTC
TTCAAGGAGC GCATCAGCGA CATGTGCAAA GAGAACCGAG AGAGCTTGGT GGTGAACTAT
GAGGACCTGG CAGCCAGGGA GCATGTGTTG GCTTACTTCC TGCCCGAGGC ACCTGCAGAG
CTACTGCAGA TCTTCGACGA GGCTGCCCTG GAAGTGGTGC TGGCCATGTA CCCCTAGTAC
GACCGCATTG CCAGCCACAT CCATGTGCGT ATCTCCCACC TGCCCCTGGT GGAGGAGCTG
CGTTCACTCA GGCAGCTGCA CCTTAACCAG CTGATCCGGA CCAGCGGGGT GGTGACCAGT
TGCACGGGCG TCCTGCCCCA GCTCAGCATG GTCAAGTACA ACTGCAACAA GTGTGGCTTC
GTGCTGGGGC CTTTCTGCCA GTCCCAGAAC CAGGAGGTGA AGCCGGGCTC CTGCCCTGAG
TGCCAGTCAG CTGGCCCCTT TGAGGTCAAC ATGGAAGAGA CCATCTACCA GAACTACCAG
CGCATCCGGA TTCAGGAGAG TCCTGGCAAG GTGGCAGCTG GCCGGCTGCC TCGCTCCAAG
GACGCCATCC TCCTGGCTGA TCTAGTGGAC AGCTGCAAGC CAGGGGATGA GATTGAATTG
ACTGGCATCT ACCACAACAA CTACGATGGG GCCCTCAACA CCGCCAATGG CTTCCCCGTC
TTTGCCACTG TCATCCTAGC CAACCATGTG GCCAAGAAAG ATAACAAGGT CGCCGTGGGT
GAGCTGACTG ATGAGGACGT GAAGATGATC ACCAGCCTCT CCAAGGACCA GCAGATCGGG
GAGAAGATCT TTGCCAGCAT CGCTCCTTCC ATCTATGGGC ATGAAGACAT CAAGCGGGGC
CTAGCGCTGG CTCTGTTTGG AGGGGAGCCC AAGAACCCAG GTGGCAAGCA CAAGGTGCGA
GGCGACATCA ACGTGCTCCT GTGTGGAGAT CCTGGCACAG CCAAGTCTCA GTTCCTCAAG
TACATCGAGA AGGTGTCCAG CCGAGCCATC TTCACCACTG GCCAGGGGGC CTCAGCCGTA
GGCCTCACGG CGTATGTTCA GCGGCACCCT GTCAGCCGGG AGTGGACCCT GGAGGCCGGG
GCCCTGGTGC TGGCAGACCG GGGAGTGTGT CTCATCGATG AATTTGACAA GATGAACGAC
CAGGATAGGA CCAGCATCCA CGAGGCCATG GAGCAGCAGA GCATTTCCAT CTCCAAGGCC
GGCATTGTCA CCTCCCTGCA GGCGCGCTGT ACCGTCATTG CTGCTGCCAA CCCCATAGGC
GGCCGCTATG ACCCCTCGCT CACCTTCTCA GAAAATGTGG ACCTCACAGA GCCCATCATT
TCCCGCTTTG ATATCCTGTG TGTGGTGAGG GACACAGTGG ACCCAGTCCA GGATGAGATG
CTGGCCCGTT TTGTGGTTGG CAGCCACGTC AGACACCACC CCAGCAACAA GGAGGATGGG
GGGCTGGGCG GCACCCCAGA GCCCGCCATG CCCAACACGT ATGGCGTGGA GCCCCTGCCG
CAGGAGGTCC TGAGGAAGTA CATCATCTAC GCCAAGGAGA AGGTCCACCC GAAGCTCAAC
CAGATGGACC AGGACAAGGT GGCCAGGATG TACAGTGACC TGAGGAAAGA GTCCATGGCC
ACAGGCAGCA TCCCCATCAC AGTGCGGCAC ATTGAGTCCA TGATCCGCAT GGCTGAGGCC
CACGCGCGCA TCCACCTGCG GGACTACGTG ATGGAGGACG ATGTCAACAT GGCCATCCGC
GTGATGCTGG AGAGCTTCGT GGATACACAG AAGTTCAGCG TCATGCGCAG TATGCGGAAG
ACCTTCGCCC GCTACCTGTC CTTCCGGCGG GACAACAATG AGCTATTGCT CTTCATCCTG
AAGCAGCTGG TGGCTGAGCA GGTGGCTTAT CAGCGCAGCC GCTTTGGGGC CCAGCAGGAC
ACTATTGAAG TGCCCGAGAA GGACTTGGTG GACAAGGCTC GTCAGATCAA CATCCACAAT
CTGTCTGCCT TTTACGACAG TGAGCTCTTC AGGATGAACA AGTTCAGCCA TGATCTGAAG
CGGAAGGTGA TCCTTCAGCA GTTCTGAGCA ACGGGGTTTT TGTGTGATGC TGGCAGGTCT
GCTCAGGAAA CCAAGCCAGT CCTAGAGGGA AGGTGGTGTG GCTGGCCTGC AGCTGCATGT
TTCCTCACTC TCAAGTCCTG CTTGGTGATT TCATTTCCTC TGCTCTTGCC ATCTGGGTTA
CCACCTTTCC CAGAGCTGCT TTTTCAGCTG CCCGCCAGTG GCCCACCACC AACCTCCTTC
TGTGGGGTGG TGTGGCATGT GTTCAGGACA CCCAGGGTCT GTTCTGGGAG ATGGGGTTCA
TGAGGCAATC TTGGCATGAT GTCTCTGTCC TGCTGCCTGT ACTGCCATTG CCTGAACGAA
GAGCGAGGTC ACTTTACTTG CTGTGTGTTC TGAACTGGGT CCTGCGGTTC TCTAGGCTTT
CCTGAGTAGA GGCAGCATTT GGGTTCTTCA CAGAGGGGAC CCTGACTGGT CACATAGCCC
TGCAACCTTG GCTTCTGCCA GAGGGAAGGT TGGTTGGGGT CAGGGATGAT GACTCGTGGT
GGGGGTGATC CCAGCAAGGC CCCTGTGTGG GGTAGTCTGT CCTCCTGCCT GGCCACTTCC
CCATGCTCTT GTTTGTACAT TCACTTCTCC TTCCTGTAGT TTTAGTTTTT AATAAAATGG
AGTAAAATCT GAAAAAAAAA AAAAAAAAA
Deduced amino acid sequence: (length: 579) [FASTA format sequence]
MVKYNCNKCG FVLGPFCQSQ NQEVKPGSCP ECQSAGPFEV NMEETIYQNY QRIRIQESPG
KVAAGRLPRS KDAILLADLV DSCKPGDEIE LTGIYHNNYD GALNTANGFP VFATVILANH
VAKKDNKVAV GELTDEDVKM ITSLSKDQQI GEKIFASIAP SIYGHEDIKR GLALALFGGE
PKNPGGKHKV RGDINVLLCG DPGTAKSQFL KYIEKVSSRA IFTTGQGASA VGLTAYVQRH
PVSREWTLEA GALVLADRGV CLIDEFDKMN DQDRTSIHEA MEQQSISISK AGIVTSLQAR
CTVIAAANPI GGRYDPSLTF SENVDLTEPI ISRFDILCVV RDTVDPVQDE MLARFVVGSH
VRHHPSNKED GGLGGTPEPA MPNTYGVEPL PQEVLRKYII YAKEKVHPKL NQMDQDKVAR
MYSDLRKESM ATGSIPITVR HIESMIRMAE AHARIHLRDY VMEDDVNMAI RVMLESFVDT
QKFSVMRSMR KTFARYLSFR RDNNELLLFI LKQLVAEQVA YQRSRFGAQQ DTIEVPEKDL
VDKARQINIH NLSAFYDSEL FRMNKFSHDL KRKVILQQF
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
BLAST on RefSeq (Human): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| MCM2 | DNA replication licensing factor MCM2 [Homo sapiens]. | 1543 | 0.0 | |
|
| MCM4 | DNA replication licensing factor MCM4 [Homo sapiens]. | 338 | 2e-92 | |
|
| MCM5 | DNA replication licensing factor MCM5 [Homo sapiens]. | 325 | 2e-88 | |
|
| MCM8 | DNA replication licensing factor MCM8 isoform 2 [Homo sapiens]. | 295 | 2e-79 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| Mcm2 | DNA replication licensing factor MCM2 [Mus musculus]. | 1508 | 0.0 | |
|
| Mcm4 | DNA replication licensing factor MCM4 [Mus musculus]. | 333 | 5e-91 | |
|
| Mcm6 | DNA replication licensing factor MCM6 [Mus musculus]. | 322 | 1e-87 | |
|
| Mcm7 | DNA replication licensing factor MCM7 [Mus musculus]. | 319 | 8e-87 | |
|
| Mcm5 | DNA replication licensing factor MCM5 [Mus musculus]. | 317 | 5e-86 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LOC484622 | PREDICTED: similar to minichromosome maintenance protein 2 [Canis familiaris]. | 1543 | 0.0 | |
|
| LOC477871 | PREDICTED: similar to minichromosome maintenance protein 4 [Canis familiaris]. | 338 | 3e-92 | |
|
| LOC476131 | PREDICTED: similar to DNA replication licensing factor MCM6 (P105MCM) [Canis familiaris]. | 321 | 3e-87 | |
|
| LOC479737 | PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47 homolog) (P1.1-MCM3) isoform 5 [Canis familiaris]. | 320 | 6e-87 | |
|
| LOC610519 | PREDICTED: similar to DNA replication licensing factor MCM5 (CDC46 homolog) (P1-CDC46) [Canis familiaris]. | 295 | 2e-79 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| MCM2 | PREDICTED: minichromosome maintenance complex component 2 isoform 3 [Bos taurus]. | 1436 | 0.0 | O |
|
| MCM4 | DNA replication licensing factor MCM4 [Bos taurus]. | 342 | 2e-93 | |
|
| MCM5 | DNA replication licensing factor MCM5 [Bos taurus]. | 328 | 3e-89 | |
|
| MCM8 | DNA replication licensing factor MCM8 [Bos taurus]. | 294 | 3e-79 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| MCM2 | PREDICTED: DNA replication licensing factor MCM2 [Sus scrofa]. | 1053 | 0.0 | |
|
| MCM3 | PREDICTED: DNA replication licensing factor MCM3 [Sus scrofa]. | 308 | 1e-83 | |
|
| MCM8 | PREDICTED: DNA replication licensing factor MCM8 [Sus scrofa]. | 297 | 2e-80 | |
|
| LOC100624405 | PREDICTED: DNA replication licensing factor MCM2-like [Sus scrofa]. | 291 | 2e-78 | |
|
| MCM7 | PREDICTED: DNA replication licensing factor MCM2, partial [Sus scrofa]. | 256 | 6e-68 | |
Oligo-microarray probe: TOP
Probe ID | Rel. | Probe sequence |
---|
AGPOA4-03153 | 4.1 | TCTGTCTGCCTTTTACGACAGTGAGCTCTTCAGGATGAACAAGTTCAGCCATGATCTGAA |
Assembly member: TOP