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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0094_A06
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,394)
[FASTA format sequence]
CTCGACACCG ACGCCGCTGC CGCCGCAGGC CCCTCCACGC CCACACCCCC TACCCACTGC
CCAGCCATGG AGGCCATCAA GAAGAAGATG CAGATGCTGA AGCTGGACAA GGAGAACGCC
ATCGACCGGG CCGAGCAGGC GGAGTCGGAT AAGAAAGCTG CTGAGGAGAA GTGCAAGCAG
GTGGAGGAGG AGCTGACGCA CCTCCAGAAG AAGCTGAAGG GGACAGAGGA TGAGCTGGAC
AAATACTCCG AGAACCTGAA GGACGCGCAG GAAAAGCTGG AGTTGAGCGA GAAGAAAGCC
TCCGACGCCG AAGGGGATGT AGCAGCTCTC AATCGGCGCA TCCAACTCGT TGAGGAGGAG
TTGGACAGGG CTCAGGAACG ACTGGCCACA GCCCTGCAGA AGCTTGAGGA GGCAGAAAAG
GCTGCAGATG AGAGCGAGAG AGGAATGAAG GTGATAGAAA ACCGGGCCAT GAAAGATGAG
GAGAAGATGG AGATTCAGGA GATGCAGCTC AAAGAGGCCA AGCACATTGC CGAGGAGGCC
GACCGCAAAT ACGAGGAGGT AGCTCGTAAG TTGGTCATCC TGGAGGGCGA GCTGGAGAGG
GCAGAGGAGC GTGCCGAGGT GTCTGAACTA AAATGTGGTG ACCTGGAAGA AGAACTCAAG
AATGTCACCA ACAACCTGAA GTCGCTAGAG GCTGCATCTG AAAAGTATTC TGAAAAGGAG
GATAAATACG AAGAAGAGAT TAAACTTCTG TCTGACAAAC TGAAAGAGGC TGAGACCCGT
GCTGAATTTG CAGAGAGAAC AGTTGCAAAA CTGGAAAAGA CCATCGATGA CCTGGAAGAA
AAACTTGCCC AGGCCAAAGA AGAGAACGTG GGCTTACATC AGACACTGGA TCAGACACTA
AACGAACTAA ACTGTATATA ACCAAAACAG AAGAGTCTCG TTCCATCAGA AACTCCAGAG
CTACGTGTTT TTCTCTTCTC TTGTAAGAAG TTTCTTTTGT TATTGCCTCT TTGCTTTGCT
GGAAATGTCA AGCAAATTAT GAATACGTGA CCAAATATTT TGTATCAGAA AAGCTTTGAG
CACCAGTTAA ATCTATTCCT TCCTTTTTTT CAAGTGGCAC CAGCTTTTTC AGCTCTATTT
TTATCCTTAA ATTGCATTTA TTCCTAAAGT AGGCAGGGTA TTTCATATTG AGCATACTCT
CTTAAGACTG AGGGCATTTG GTTCCTGGGA GAATAGACAA CCCCACACTT TAAAAATACA
GACTCCAATG TCTAGTCATG GGTCAATTTA AAAAGTTGAA GAATATCCAC TGCTGGTCAC
ACTATAGGAG GCCAGGGACC ATCACATTAA AATGAGTGGG GATTTTCCAG CCAGAGTAAA
AAAAAAAAAA AAAA
Deduced amino acid sequence: (length: 284) [FASTA format sequence]
MEAIKKKMQM LKLDKENAID RAEQAESDKK AAEEKCKQVE EELTHLQKKL KGTEDELDKY
SENLKDAQEK LELSEKKASD AEGDVAALNR RIQLVEEELD RAQERLATAL QKLEEAEKAA
DESERGMKVI ENRAMKDEEK MEIQEMQLKE AKHIAEEADR KYEEVARKLV ILEGELERAE
ERAEVSELKC GDLEEELKNV TNNLKSLEAA SEKYSEKEDK YEEEIKLLSD KLKEAETRAE
FAERTVAKLE KTIDDLEEKL AQAKEENVGL HQTLDQTLNE LNCI
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TPM4 | tropomyosin alpha-4 chain isoform 1 [Homo sapiens]. | 379 | e-105 | |
|
| TPM1 | tropomyosin alpha-1 chain isoform 3 [Homo sapiens]. | 322 | 5e-88 | O |
|
| TPM2 | tropomyosin beta chain isoform 2 [Homo sapiens]. | 304 | 1e-82 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tpm1 | tropomyosin alpha-1 chain isoform 3 [Mus musculus]. | 322 | 4e-88 | O |
|
| Tpm2 | tropomyosin beta chain [Mus musculus]. | 298 | 5e-81 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC609879 | PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis familiaris]. | 383 | e-106 | O |
|
| LOC481598 | PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 15 [Canis familiaris]. | 325 | 8e-89 | |
|
| TPM1 | PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin) isoform 6 [Canis familiaris]. | 300 | 3e-81 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Bos taurus]. | 380 | e-105 | O |
|
| TPM3 | tropomyosin alpha-3 chain [Bos taurus]. | 299 | 5e-81 | O |
|
| TPM1 | tropomyosin alpha-1 chain [Bos taurus]. | 296 | 2e-80 | O |
|
| TPM2 | tropomyosin beta chain [Bos taurus]. | 280 | 3e-75 | O |
|
| LOC784223 | PREDICTED: tropomyosin 4 [Bos taurus]. | 155 | 6e-38 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM2 | tropomyosin beta chain [Sus scrofa]. | 299 | 2e-81 | |
|
| LOC100620599 | PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa]. | 298 | 6e-81 | |
|
| TPM1 | tropomyosin alpha-1 chain [Sus scrofa]. | 292 | 3e-79 | |
|
| TPM4 | tropomyosin alpha-4 chain [Sus scrofa]. | 243 | 1e-64 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07957 | 4.1 | AAGAATATCCACTGCTGGTCACACTATAGGAGGCCAGGGACCATCACATTAAAATGAGTG |
Assembly member: TOP