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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0101_F10
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,467)
[FASTA format sequence]
GGAAGACTCG CCCCGCAGCA GGGCGGTGCA CCCCAGGAGC CTATAAGGGC TTCTCCTCCA
CCCGGCCGGC TCACTCGACC CCGACGCCGC TGCCGCCGCA GGCCCCTCCA CGCCCACACC
CCCTACCCAC TGCCCAGCCA TGGAGGCCAT CAAGAAGAAG ATGCAGATGC TGAAGCTGGA
CAAGGAGAAC GCCATCGACC GGGCCGAGCA GGCGGAGTCG GATAAGAAAG CTGCTGAGGA
GAAGTGCAAG CAGGTGGAGG AGGAGCTGAC GCACCTCCAG AAGAAGCTGA AGGGGACAGA
GGATGAGCTG GACAAATACT CCGAGAACCT GAAGGACGCG CAGGAAAAGC TGGAGCTGAG
CGAGAAGAAA GCCTCCGACG CCGAAGGGGA TGTAGCAGCT CTCAATCGGC GCATCCAACT
CGTTGAGGAG GAGTTGGACA GGGCTCAGGA ACGACTGGCC ACAGCCCTGC AGAAGCTTGA
GGAGGCAGAA AAGGCTGCAG ATGAGAGCGA GAGAGGAATG AAGGTGATAG AAAACCGGGC
CATGAAAGAT GAGGAGAAGA TGGAGATTCA GGAGATGCAG CTCAAAGAGG CCAAGCACAT
TGCCGAGGAG GCCGACCGCA AATACGAGGA GGTAGCTCGT AAGTTGGTCA TCCTGGAGGG
CGAGCTGGAG AGGGCAGAGG AGCGTGCCGA GGTGTCTGAA CTAAAATGTG GTGACCTGGA
AGAAGAACTC AAGAATGTCA CCAACAACCT GAAGTCGCTA GAGGCTGCAT CTGAAAAGTA
TTCTGAAAAG GAGGATAAAT ATGAAGAAGA AATTAAACTT CTGTCTGACA AACTGAAAGA
GGCTGAGACC CGTGCTGAAT TTGCAGAGAG AACAGTTGCA AAACTGGAAA AGACCATCGA
TGACCTGGAA GAAAAACTTG CCCAGGCCAA AGAAGAGAAC GTGGGCTTAC ATCAGACACT
GGATCAGACA CTAAACGAAC TAAACTGTAT ATAACCAAAA CAGAAGAGTC TCGTTCCATC
AGAAACTCCA GAGCTACGTG TTTTTCTCTT CTCTTGTAAG AAGTTTCTTT TGTTATTGCC
TCTTTGCTTT GCTGGAAATG TCAAGCAAAT TATGAATACG TGACCAAATA TTTTGTATCA
GAAAAGCTTT GAGCACCAGT TAAATCTATT CCTTCCTTTT TTTCAAGTGG CACCAGCTTT
TTCAGCTCTA TTTTTATCCT TAAATTGCAT TTATTCCTAA AGTAGGCAGG GTATTTCATA
TTGAGCATAC TCTCTTAAGA CTGAGGGCAT TTGGTTCCTG GGAGAATAGA CAACCCCACA
CTTTAAAAAT ACAGACTCCA ATGTCTAGTC ATGGGTCAAT TTAAAAAGTT GAAGAATATC
CACTGCTGGT CACACTATAG GAGGCCAGGG ACCATCACAT TAAAATGAGT GGGGATTTTC
CAGCCAGAGT AAAAAAAAAA AAAAAAA
Deduced amino acid sequence: (length: 284) [FASTA format sequence]
MEAIKKKMQM LKLDKENAID RAEQAESDKK AAEEKCKQVE EELTHLQKKL KGTEDELDKY
SENLKDAQEK LELSEKKASD AEGDVAALNR RIQLVEEELD RAQERLATAL QKLEEAEKAA
DESERGMKVI ENRAMKDEEK MEIQEMQLKE AKHIAEEADR KYEEVARKLV ILEGELERAE
ERAEVSELKC GDLEEELKNV TNNLKSLEAA SEKYSEKEDK YEEEIKLLSD KLKEAETRAE
FAERTVAKLE KTIDDLEEKL AQAKEENVGL HQTLDQTLNE LNCI
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TPM4 | tropomyosin alpha-4 chain isoform 1 [Homo sapiens]. | 379 | e-105 | |
|
| TPM1 | tropomyosin alpha-1 chain isoform 3 [Homo sapiens]. | 322 | 6e-88 | |
|
| TPM2 | tropomyosin beta chain isoform 2 [Homo sapiens]. | 304 | 1e-82 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tpm1 | tropomyosin alpha-1 chain isoform 3 [Mus musculus]. | 322 | 5e-88 | |
|
| Tpm2 | tropomyosin beta chain [Mus musculus]. | 298 | 6e-81 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC609879 | PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis familiaris]. | 383 | e-106 | |
|
| LOC481598 | PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 15 [Canis familiaris]. | 325 | 9e-89 | |
|
| TPM1 | PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin) isoform 6 [Canis familiaris]. | 300 | 3e-81 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Bos taurus]. | 380 | e-105 | |
|
| TPM3 | tropomyosin alpha-3 chain [Bos taurus]. | 299 | 5e-81 | |
|
| TPM1 | tropomyosin alpha-1 chain [Bos taurus]. | 296 | 2e-80 | |
|
| TPM2 | tropomyosin beta chain [Bos taurus]. | 280 | 3e-75 | |
|
| LOC784223 | PREDICTED: tropomyosin 4 [Bos taurus]. | 155 | 7e-38 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM2 | tropomyosin beta chain [Sus scrofa]. | 299 | 2e-81 | |
|
| LOC100620599 | PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa]. | 298 | 7e-81 | |
|
| TPM1 | tropomyosin alpha-1 chain [Sus scrofa]. | 292 | 3e-79 | |
|
| TPM4 | tropomyosin alpha-4 chain [Sus scrofa]. | 243 | 2e-64 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07957 | 4.1 | AAGAATATCCACTGCTGGTCACACTATAGGAGGCCAGGGACCATCACATTAAAATGAGTG |
Assembly member: TOP