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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0110_G06
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,494)
[FASTA format sequence]
GGTGTGGCCC ACTGACGATC GGTGGGAGTC GTGCGTGGGG TTGGGAGTTG ACTCCGGGTG
TACTTCTGTG TTTCTGCTCA TCCTTTCCGT AGATGTCTCA TATGGAGCTG GGGTTGGACT
CGGGTGACGA TGACTTGCTG GGCTTCCTGT TAGAGGAAAG CGGAGGTCTG GGGGCGGCGC
CGGACGAAGC CTTGGAGGCG CCCCTGGATT GGGAGCTACC ACTTTCCGAG GCATTGAGCG
ATTGGGACGT AGAGGATTTC CTGAGCTGCC TGTCGAGTCC CCCAGCATCG TTGACCGATT
TTAGCCACTC TGACCCCTAT CTTGTCCACC ATGATCACAC CTATTCCCTG TCACAGGAGT
ATGTCTCCAT AGATCTAGAT AATGAGGATT ATGAGAAGGA AGGGGCCCAA ATGACTTCAC
TGCGTGTGGA GGCGCCCGCA GAGCAGGAGA TTGGTGAGCT GATACTGACG GAGGAGGAGA
AGAGGCTTTT GGAGAAGGAG GGGCTTACTC TGCCCGGGAC ACTTCCTCTC ACTAAGATGG
AGGAACAAGT TCTGAGACGA GTGCGAAGGA AGATTCGAAA CAAAAAGTCT GCTCAAGAGA
GCCGCAGGAA GAAGAAGGTG TATGTGGGGA GTTTAGAGAG CAGGGTCCTG AAATACTCGG
CCCAGAATCT GGAGCTACAG AACAAAGTAC AGCTCCTGGA GGAGCAGAAT CTGTCCCTTT
TGGATCAGTT GAGGAGGCTG CAGTCCATGG TGATTCAGAC GGCAAACAAA GCCAGCAGCA
GCAGCACCTG CATCTTGGTC CTGCTCTTCT CCTTCTGTCT CCTCTTCGTA CCTGCCATGT
ACTCCTCGGA CACAAGGGGG AGCCCGCCAG CCGAGCATGG AGTGTTGTCC CGCCAGCTTC
GTGCCCTCCC CAGCGAGGAC GTTCCCCAGC GGGACCTGCC TGCACTGCAG TCAGAGGTAC
CACAGGACAG CTCAACCCAC GAGCTCCAGG CTCCTGGCAA CTCTTGCTGC CTGTTCCACC
TCATGGCTTG GGCTCCTGGG GCAGAATCGC CCATGAAGCT GCCACTGCCC GACCGCTTCT
CAAGGTCTTC TAGCCCAGGT CCCATCTTCC CCCTGCATGC AAATCTCACA AGAGAGGGAG
GATGGCTCCC TACCCACAGC CCCATATCTG TTACCTTGCA GGGCAGGTAC TCAGGCTAGA
TGTGAGAATG CAGGGGGCCT CAGCCAGAGC CTGGTGCCCC CAGTCTGTGT TCAAAGGAAA
AGGAATGGGA GAGGGTGAGC CTCAGGTCCT GTCCCCTGTC AGGAAGCCTG AGGGCACAAA
CACACCACAC TTACTGGCTC TCTGGGGTTT TATTTGCACC CATGTATGTC TGTTGTTCCA
TTAAGGGGCC TGGGAGAGTC CACTGACTTC CTTGAACATT TCATGCAATG AGGGGATGGG
GTGAAGAAAG AAATAAATAA GTGATTCTGA TGCTTGGGAA AAAAAAAAAA AAAA
Deduced amino acid sequence: (length: 368) [FASTA format sequence]
MSHMELGLDS GDDDLLGFLL EESGGLGAAP DEALEAPLDW ELPLSEALSD WDVEDFLSCL
SSPPASLTDF SHSDPYLVHH DHTYSLSQEY VSIDLDNEDY EKEGAQMTSL RVEAPAEQEI
GELILTEEEK RLLEKEGLTL PGTLPLTKME EQVLRRVRRK IRNKKSAQES RRKKKVYVGS
LESRVLKYSA QNLELQNKVQ LLEEQNLSLL DQLRRLQSMV IQTANKASSS STCILVLLFS
FCLLFVPAMY SSDTRGSPPA EHGVLSRQLR ALPSEDVPQR DLPALQSEVP QDSSTHELQA
PGNSCCLFHL MAWAPGAESP MKLPLPDRFS RSSSPGPIFP LHANLTREGG WLPTHSPISV
TLQGRYSG
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
BLAST on RefSeq (Human): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| CREB3 | cyclic AMP-responsive element-binding protein 3 [Homo sapiens]. | 382 | e-106 | O |
|
| CREB3L4 | cyclic AMP-responsive element-binding protein 3-like protein 4 [Homo sapiens]. | 98.2 | 2e-20 | |
|
| CREB3L3 | cyclic AMP-responsive element-binding protein 3-like protein 3 [Homo sapiens]. | 86.7 | 5e-17 | |
|
| CREB3L2 | cyclic AMP-responsive element-binding protein 3-like protein 2 [Homo sapiens]. | 71.2 | 2e-12 | |
|
| CREB3L1 | cyclic AMP-responsive element-binding protein 3-like protein 1 [Homo sapiens]. | 67.8 | 3e-11 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| Creb3 | cyclic AMP-responsive element-binding protein 3 [Mus musculus]. | 272 | 4e-73 | O |
|
| Creb3l4 | cyclic AMP-responsive element-binding protein 3-like protein 4 [Mus musculus]. | 94 | 3e-19 | |
|
| Creb3l3 | cyclic AMP-responsive element-binding protein 3-like protein 3 [Mus musculus]. | 84.7 | 2e-16 | |
|
| LOC638517 | PREDICTED: cyclic AMP-responsive element-binding protein 3-like protein 2-like [Mus musculus]. | 71.2 | 2e-12 | |
|
| Creb3l2 | cyclic AMP-responsive element-binding protein 3-like protein 2 [Mus musculus]. | 71.2 | 2e-12 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LOC611934 | PREDICTED: similar to cAMP responsive element binding protein 3 [Canis familiaris]. | 396 | e-110 | O |
|
| LOC612303 | PREDICTED: similar to cAMP responsive element binding protein 3-like 4 [Canis familiaris]. | 95.1 | 2e-19 | |
|
| LOC485046 | PREDICTED: similar to cAMP responsive element binding protein 3-like 3 [Canis familiaris]. | 85.5 | 1e-16 | |
|
| LOC491369 | PREDICTED: similar to cAMP responsive element binding protein 3-like 2 [Canis familiaris]. | 71.2 | 2e-12 | |
|
| LOC483636 | PREDICTED: similar to cAMP responsive element binding protein 3-like 1 [Canis familiaris]. | 67.8 | 3e-11 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| CREB3 | cyclic AMP-responsive element-binding protein 3 [Bos taurus]. | 447 | e-125 | O |
|
| CREB3L4 | PREDICTED: cAMP responsive element binding protein 3-like 4-like [Bos taurus]. | 98.6 | 9e-21 | |
|
| CREB3L3 | cyclic AMP-responsive element-binding protein 3-like protein 3 [Bos taurus]. | 84.7 | 2e-16 | |
|
| CREB3L2 | cyclic AMP-responsive element-binding protein 3-like protein 2 [Bos taurus]. | 71.2 | 2e-12 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| CREB3 | cyclic AMP-responsive element-binding protein 3 [Sus scrofa]. | 565 | e-161 | |
|
| LOC100627545 | PREDICTED: hypothetical protein LOC100627545 [Sus scrofa]. | 128 | 7e-30 | |
|
| CREB3L4 | cyclic AMP-responsive element-binding protein 3-like protein 4 [Sus scrofa]. | 95.1 | 9e-20 | |
|
| LOC100522979 | PREDICTED: cyclic AMP-responsive element-binding protein 3-like protein 3-like isoform 2 [Sus scrofa]. | 85.9 | 5e-17 | |
Oligo-microarray probe: TOP
Probe ID | Rel. | Probe sequence |
---|
AGPOA4-13128 | 4.1 | TTTCATGCAATGAGGGGATGGGGTGAAGAAAGAAATAAATAAGTGATTCTGATGCTTGGG |
Assembly member: TOP