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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0136_G03
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,296)
[FASTA format sequence]
GCAGCTCTTG CAAGAGCAGA GCCGAGCCGA GCGCCCGCCG CTGCCCGCCG CCCGCTGCGT
GCGCCTCCGC GCCATGGCTG GCCTCAACTC CCTGGAGGCG GTGAAACGCA AGGTCCAGGC
CCTGCAGCAG CAGGCGGACG AGGCAGAGGA TCGCGCGCAG GGCCTGCAGC GGGAGCTGGA
CGGCGAGCGC GAGCGGCGGG AGAAAGCCGA AGGGGATGTA GCAGCTCTCA ATCGGCGCAT
CCAACTCGTT GAGGAGGAGT TGGACAGGGC TCAGGAACGA CTGGCCACAG CCCTGCAGAA
GCTTGAGGAG GCAGAAAAGG CTGCAGATGA GAGCGAGAGA GGAATGAAGG TGATAGAAAA
CCGGGCCATG AAAGATGAGG AGAAGATGGA GATTCAGGAG ATGCAGCTCA AAGAGGCCAA
GCACATTGCC GAGGAGGCCG ACCGCAAATA CGAGGAGGTA GCTCGTAAGT TGGTCATCCT
GGAGGGCGAG CTGGAGAGGG CAGAGGAGCG TGCCGAGGTG TCTGAACTAA AATGTGGTGA
CCTGGAAGAA GAACTCAAGA ATGTCACCAA CAACCTGAAG TCGCTAGAGG CTGCATCTGA
AAAGTATTCT GAAAAGGAGG ATAAATATGA AGAAGAGATT AAACTTCTGT CTGACAAACT
GAAAGAGGCT GAGACCCGTG CTGAATTTGC AGAGAGAACA GTTGCAAAAC TGGAAAAGAC
CATCGATGAC CTGGAAGAAA AACTTGCCCA GGCCAAAGAA GAGAACGTGG GCTTACATCA
GACACTGGAT CAGACACTAA ACGAACTAAA CTGTATATAA CCAAAACAGA AGAGTCTCGT
TCCATCAGAA ACTCCAGAGC TACGTGTTTT TCTCTTCTCT TGTAAGAAGT TTCTTTTGTT
ATTGCCTCTT TGCTTTGCTG GAAATGTCAA GCAAATTATG AATACGTGAC CAAATATTTT
GTATCAGAAA AGCTTTGAGC ACCAGTTAAA TCTATTCCTT CCTTTTTTTC AAGTGGCACC
AGCTTTTTCA GCTCTATTTT TATCCTTAAA TTGCATTTAT TCCTAAAGTA GGCAGGGTAT
TTCATATTGA GCATACTCTC TTAAGACTGA GGGCATTTGG TTCCTGGGAG AATAGACAAC
CCCACACTTT AAAAATACAG ACTCCAATGT CTAGTCATGG GTCAATTTAA AAAGTTGAAG
AATATCCACT GCTGGTCACA CTATAGGAGG CCAGGGACCA TCACATTAAA ATGAGTGGGG
ATTTTCCAGC CAGAGTAAAA AAAAAAAAAA AAAAAA
Deduced amino acid sequence: (length: 248) [FASTA format sequence]
MAGLNSLEAV KRKVQALQQQ ADEAEDRAQG LQRELDGERE RREKAEGDVA ALNRRIQLVE
EELDRAQERL ATALQKLEEA EKAADESERG MKVIENRAMK DEEKMEIQEM QLKEAKHIAE
EADRKYEEVA RKLVILEGEL ERAEERAEVS ELKCGDLEEE LKNVTNNLKS LEAASEKYSE
KEDKYEEEIK LLSDKLKEAE TRAEFAERTV AKLEKTIDDL EEKLAQAKEE NVGLHQTLDQ
TLNELNCI
SNP mapping information
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TPM4 | tropomyosin alpha-4 chain isoform 2 [Homo sapiens]. | 280 | 2e-75 | O |
|
| TPM3 | tropomyosin alpha-3 chain isoform 4 [Homo sapiens]. | 213 | 3e-55 | |
|
| TPM2 | tropomyosin beta chain isoform 2 [Homo sapiens]. | 184 | 2e-46 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tpm4 | tropomyosin alpha-4 chain [Mus musculus]. | 271 | 1e-72 | O |
|
| Tpm1 | tropomyosin alpha-1 chain isoform 6 [Mus musculus]. | 223 | 3e-58 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC609879 | PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis familiaris]. | 235 | 6e-62 | |
|
| TPM1 | PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 19 [Canis familiaris]. | 223 | 2e-58 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Bos taurus]. | 235 | 6e-62 | O |
|
| TPM3 | PREDICTED: tropomyosin 4-like [Bos taurus]. | 193 | 3e-49 | |
|
| TPM3 | tropomyosin alpha-3 chain [Bos taurus]. | 176 | 4e-44 | |
|
| LOC784223 | PREDICTED: tropomyosin 4 [Bos taurus]. | 164 | 2e-40 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Sus scrofa]. | 280 | 1e-75 | O |
|
| TPM3 | tropomyosin alpha-3 chain [Sus scrofa]. | 197 | 1e-50 | O |
|
| TPM2 | tropomyosin beta chain [Sus scrofa]. | 177 | 1e-44 | |
|
| LOC100620599 | PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa]. | 175 | 6e-44 | |
|
| TPM1 | tropomyosin alpha-1 chain [Sus scrofa]. | 172 | 5e-43 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07957 | 4.1 | AAGAATATCCACTGCTGGTCACACTATAGGAGGCCAGGGACCATCACATTAAAATGAGTG |
Assembly member: TOP