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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0158_D08
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 1,501)
[FASTA format sequence]
GCTTGCGGAG CCCATAGGTG TGGCCCACTG ACGATCGGTG GGAGTCGTGC GTGGGGTTGG
GAGTTGACTC CGGGTGTACT TCTGTGTTTC TGCTCATCCT TTCCGTAGAT GTCTCATATG
GAGCTGGGGT TGGACTCGGG TGACGATGAC TTGCTGGGCT TCCTGTTAGA GGAAAGCGGA
GGTCTGGGGG CGGCGCGGGA CGAAGCCTTG GAGGCGCCCC TGGATTGGGA GCTACCACTT
TCCGAGGCAT TGAGCGATTG GGACGTAGAG GATTTCCTGA GCTGCCTGTC GAGTCCCCCA
GCATCGTTGA CCGATTTTAG CCACTCTGAC CCCTATCTTG TCCACCATGA TCACACCTAT
TCCCTGTCAC AGGAGTATGT CTCCATAGAT CTAGATAATG AGGATTATGA GAAGGAAGGG
GCCCGAATGA CTTCACTGCG TGTGGAGGCG CCCGCAGAGC AGGAGATTGG TGAGCTGATA
CTGACGGAGG AGGAGAAGAG GCTTTTGGAG AAGGAGGGGC TTACTCTGCC CGGGACACTT
CCTCTCACTA GGATGGAGGA ACAAGTTCTG AGACGAGTGC GAAGGAAGAT TCGAAACAAA
AAGTCTGCTC AAGAGAGCCG CAGGAAGAAG AAGGTGTATG TGGGGAGTTT AGAGAGCAGG
GTCCTGAAAT ACTCGGCCCA GAATCTGGAG CTACAGAACA AAGTACAGCT CCTGGAGGAG
CAGAATCTGT CCCTTTTGGA TCAGTTGAGG AGGCTGCAGT CCATGGTGAT TCAGACGGCA
AACAAAGCCA GCAGCAGCAG CACCTGCATC TTGGTCCTGC TCTTCTCCTT CTGTCTCCTC
TTCGTACCTG CCATGTACTC CTCGGACACA AGGGGGAGCC CGCCAGCCGA GCATGGAGTG
TTGTCCCGCC AGCTTCGTGC CCTCCCCAGC GAGGACGTTC CCCAGCGGGA CCTGCCTGCA
CTGCAGTCAG AGGTACCACA GGACAGCTCA ACCCACGAGC TCCAGGCTCC TGGCAACTCT
TGCTGCCTGT TCCACCACAT GGCTTGGGCT CCTGGGGCAG AATCGCCCAT GAAGCTGCCA
CTGCCCGACC GCTTCTCAAG GTCTTCTAGC CCAGGTCCCA TCTTCCCCCT GCATGCAAAT
CTCACAAGAG AGGGAGGATG GCCCCCTACC CACAGCCCCA TATCTGTTAC CTTGCAGGGC
AGGTACTCAG GCTAGATGTG AGAATGCAGG GGGCCTCAGC CAGAGCCTGG TGCCCCCAGT
CTGTGTTCAA AGGAAAAGGA ATGGGAGAGG GTGAGCCTCA GGTCCTGTCC CCTGTCAGGA
AGCCTGAGGG CACAAACACA CCACACTTAC TGGCTTTCTG GGGTTTTATT TGCACCCATG
TATGTCTGTT GTTCCATTAA GGGGCCTGGG AGAGTCCACT GACTTCCTTG AACATTTCAT
GCAATGAGGG GATGGGGTGA AGAAAGAAAT AAATAAGTGA TTCTGAAAAA AAAAAAAAAA
A
Deduced amino acid sequence: (length: 368) [FASTA format sequence]
MSHMELGLDS GDDDLLGFLL EESGGLGAAR DEALEAPLDW ELPLSEALSD WDVEDFLSCL
SSPPASLTDF SHSDPYLVHH DHTYSLSQEY VSIDLDNEDY EKEGARMTSL RVEAPAEQEI
GELILTEEEK RLLEKEGLTL PGTLPLTRME EQVLRRVRRK IRNKKSAQES RRKKKVYVGS
LESRVLKYSA QNLELQNKVQ LLEEQNLSLL DQLRRLQSMV IQTANKASSS STCILVLLFS
FCLLFVPAMY SSDTRGSPPA EHGVLSRQLR ALPSEDVPQR DLPALQSEVP QDSSTHELQA
PGNSCCLFHH MAWAPGAESP MKLPLPDRFS RSSSPGPIFP LHANLTREGG WPPTHSPISV
TLQGRYSG
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
BLAST on RefSeq (Human): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| CREB3 | cyclic AMP-responsive element-binding protein 3 [Homo sapiens]. | 374 | e-103 | O |
|
| CREB3L4 | cyclic AMP-responsive element-binding protein 3-like protein 4 [Homo sapiens]. | 97.1 | 4e-20 | |
|
| CREB3L3 | cyclic AMP-responsive element-binding protein 3-like protein 3 [Homo sapiens]. | 85.5 | 1e-16 | |
|
| CREB3L2 | cyclic AMP-responsive element-binding protein 3-like protein 2 [Homo sapiens]. | 70.1 | 5e-12 | |
|
| CREB3L1 | cyclic AMP-responsive element-binding protein 3-like protein 1 [Homo sapiens]. | 66.6 | 6e-11 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| Creb3 | cyclic AMP-responsive element-binding protein 3 [Mus musculus]. | 272 | 4e-73 | O |
|
| Creb3l4 | cyclic AMP-responsive element-binding protein 3-like protein 4 [Mus musculus]. | 92.8 | 6e-19 | |
|
| Creb3l3 | cyclic AMP-responsive element-binding protein 3-like protein 3 [Mus musculus]. | 83.6 | 4e-16 | |
|
| LOC638517 | PREDICTED: cyclic AMP-responsive element-binding protein 3-like protein 2-like [Mus musculus]. | 70.1 | 4e-12 | |
|
| Creb3l2 | cyclic AMP-responsive element-binding protein 3-like protein 2 [Mus musculus]. | 70.1 | 4e-12 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LOC611934 | PREDICTED: similar to cAMP responsive element binding protein 3 [Canis familiaris]. | 395 | e-110 | O |
|
| LOC612303 | PREDICTED: similar to cAMP responsive element binding protein 3-like 4 [Canis familiaris]. | 94 | 3e-19 | |
|
| LOC485046 | PREDICTED: similar to cAMP responsive element binding protein 3-like 3 [Canis familiaris]. | 84.3 | 3e-16 | |
|
| LOC491369 | PREDICTED: similar to cAMP responsive element binding protein 3-like 2 [Canis familiaris]. | 70.1 | 5e-12 | |
|
| LOC483636 | PREDICTED: similar to cAMP responsive element binding protein 3-like 1 [Canis familiaris]. | 66.6 | 6e-11 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| CREB3 | cyclic AMP-responsive element-binding protein 3 [Bos taurus]. | 436 | e-122 | O |
|
| CREB3L4 | PREDICTED: cAMP responsive element binding protein 3-like 4-like [Bos taurus]. | 97.4 | 2e-20 | |
|
| CREB3L3 | cyclic AMP-responsive element-binding protein 3-like protein 3 [Bos taurus]. | 83.6 | 4e-16 | |
|
| CREB3L2 | cyclic AMP-responsive element-binding protein 3-like protein 2 [Bos taurus]. | 70.1 | 5e-12 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| CREB3 | cyclic AMP-responsive element-binding protein 3 [Sus scrofa]. | 560 | e-160 | |
|
| LOC100627545 | PREDICTED: hypothetical protein LOC100627545 [Sus scrofa]. | 130 | 3e-30 | |
|
| CREB3L4 | cyclic AMP-responsive element-binding protein 3-like protein 4 [Sus scrofa]. | 94 | 2e-19 | |
|
| LOC100522979 | PREDICTED: cyclic AMP-responsive element-binding protein 3-like protein 3-like isoform 2 [Sus scrofa]. | 84.7 | 1e-16 | |
Oligo-microarray probe: TOP
Probe ID | Rel. | Probe sequence |
---|
AGPOA4-00369 | 4.1 | CCTTGAACATTTCATGCAATGAGGGGATGGGGTGAAGAAAGAAATAAATAAGTGATTCTG |
Assembly member: TOP