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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  OVRM1_0206_E09

Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)

Nucleotide sequence:   (length: 1,194)  [FASTA format sequence]
TGTTGCCTAC TGGCCTACTG GATCATTGCT CTACAACTCC GAAGAGCAAC AGCTGAGACC
ACCTTGAGAA GAGC
ATGGTC CCAGGCCGAG TTCTGATGTG GGGGGCCCTC GCCCTGACCG
CCGTGATGAG CGCCTGTGGA GGTGAAGACA TTGCGGCCGA CCATGTTGCC TCCTATGGCT
TAAATGTCTA CCAGTCTTAC GGTCCCAGCG GCTATTATAC CCATGAATTT GATGGTGACG
AGCAATTCTA CGTGGACCTG GAGAAGAAGG AGACTGTCTG GCAGCTGCCT CTGTTTAGCA
AATTTACAAG TTTTGACCCG CAGGGTGCAC TGAGGAACAT AGCTACGGCA AAACATAATT
TGAACATCCT GATTAAACGT TCCAACAACA CCGCGGCTGT CAATCAGGTT CCTGAGGTGA
CTGTGTTTCC CAAGTCTCCA GTGATGCTGG GTCAGCCCAA CACCCTCATC TGTCATGTGG
ACAACATCTT TCCTCCTGTG ATCAACATCA CGTGGTTGAA GAACGGGCAC TCTGTCACAG
AAGGTTTTTC TGAGACCAGC TTCCTCTCCA AAAATGATCA TTCCTTCCTC AAGATCAGTT
ATCTCACCTT CCTCCCTTCT GATGATGATT TTTATGACTG CAAAGTGGAG CACTGGGGCC
TGGATAAGCC ACTTCTGAAA CACTGGGAAC CTGAGATTCC AGCCCCCATG TCAGAGCTGA
CAGAGACAGT GGTCTGCGCC CTGGGATTGA TCGTGGGCCT TGTGGGCATC GTGGTGGGCA
CTGTCTTCAT CATTCAAGGC CTGCGCTCAG GTGGTCCCTC TAGACACCAA GGGTCCTTGT
GAGTCACACT CCAGAAGGGA AGGTGCACTG CCCGCCTACA AGAGCTGAAG AGTGGATGTG
CTCAACGACC TAGAACTATT TTCTGGCCAA ATTCATCATA TACCTTCTCT CTTCCTACAT
TCTTCTTCTC ACCTCTTCTC TGGAACTTAA GGTGCTGTGT CATCTCAGAA TTCATATGCC
CTTGGAATCC TCTTCCTGAC CTTCTAGGTT TTTTTTCTTT TCTCAGTTGT TACCTGTTAT
GGGATCTCTG AGATATCCCA CTCGGCTACC TGATCCCTCA GTGACCCTAA ACTAATATGT
ACATGGAAAC AATAAATCAC TTCATGAGGT TTTTGTAAAA AAAAAAAAAA AAAA

Deduced amino acid sequence:  (length: 255) [FASTA format sequence]
MVPGRVLMWG ALALTAVMSA CGGEDIAADH VASYGLNVYQ SYGPSGYYTH EFDGDEQFYV
DLEKKETVWQ LPLFSKFTSF DPQGALRNIA TAKHNLNILI KRSNNTAAVN QVPEVTVFPK
SPVMLGQPNT LICHVDNIFP PVINITWLKN GHSVTEGFSE TSFLSKNDHS FLKISYLTFL
PSDDDFYDCK VEHWGLDKPL LKHWEPEIPA PMSELTETVV CALGLIVGLV GIVVGTVFII
QGLRSGGPSR HQGSL


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100507718PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 2 [Homo sapiens]. 393e-109
Contig/Assembly ProteinHLA-DQA2HLA class II histocompatibility antigen, DQ alpha 2 chain precursor [Homo sapiens]. 385e-107
Contig/Assembly ProteinHLA-DQA1HLA class II histocompatibility antigen, DQ alpha 1 chain precursor [Homo sapiens]. 385e-107
Contig/Assembly ProteinLOC100509457PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 4 [Homo sapiens]. 3456e-95


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Aahistocompatibility 2, class II antigen A, alpha precursor [Mus musculus]. 3423e-94O
Contig/Assembly ProteinH2-Oahistocompatibility 2, O region alpha locus [Mus musculus]. 2341e-61
Contig/Assembly ProteinH2-Ea-pshistocompatibility 2, class II antigen E alpha precursor [Mus musculus]. 2201e-57
Contig/Assembly ProteinH2-DMaclass II histocompatibility antigen, M alpha chain precursor [Mus musculus]. 79.74e-15
Contig/Assembly ProteinH2-DMb2histocompatibility 2, class II, locus Mb2 [Mus musculus]. 63.53e-10


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha [Canis lupus familiaris]. 385e-107O
Contig/Assembly ProteinLOC474869PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 11 [Canis familiaris]. 2355e-62
Contig/Assembly ProteinDLA-DRAMHC class II DR alpha chain [Canis lupus familiaris]. 2302e-60
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta [Canis lupus familiaris]. 60.53e-09


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 5 [Bos taurus]. 380e-105
Contig/Assembly ProteinLOC100336394PREDICTED: BOLA-DQA2 protein-like [Bos taurus]. 371e-103
Contig/Assembly ProteinBOLA-DQA1major histocompatibility complex, class II, DQ alpha, type 1 [Bos taurus]. 370e-102
Contig/Assembly ProteinBOLA-DQA3major histocompatibility complex, class II, DQ alpha, type 3 [Bos taurus]. 3571e-98
Contig/Assembly ProteinBOLA-DRAmajor histocompatibility complex, class II, DR alpha [Bos taurus]. 2255e-59


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLA-DQA1SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor [Sus scrofa]. 478e-135
Contig/Assembly ProteinSLA-DQASLA class II histocompatibility antigen, DQ haplotype C alpha chain precursor [Sus scrofa]. 449e-126
Contig/Assembly ProteinSLAsrc-like-adapter [Sus scrofa]. 2648e-71
Contig/Assembly ProteinSLA-DRAMHC class II DR-alpha [Sus scrofa]. 2293e-60
Contig/Assembly ProteinLOC100513292PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 63.52e-10


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-074694.1CCTCAGTGACCCTAAACTAATATGTACATGGAAACAATAAATCACTTCATGAGGTTTTTG


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003053120030531C-0000598fwd
2003082620030826C-00343211fwd
2004020420040204C-0002214fwd
2005032220050322C-000197384fwd
2006061120060611C-000165389fwd
2007080620070806C-000038388fwd
2008051520080515C-000329397fwd
2010100120101001C-00137013fwd
2011060120110601C-001518452fwd