Please validate JavaScript on your browser
[Help]
[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0206_E09
Library: OVRM1 (Ovary) Individual: M1 , Meishan (Chinese)
Nucleotide sequence :
(length: 1,194)
[FASTA format sequence] TGTTGCCTAC TGGCCTACTG GATCATTGCT CTACAACTCC GAAGAGCAAC AGCTGAGACC ACCTTGAGAA GAGC ATGGTC CCAGGCCGAG TTCTGATGTG GGGGGCCCTC GCCCTGACCG CCGTGATGAG CGCCTGTGGA GGTGAAGACA TTGCGGCCGA CCATGTTGCC TCCTATGGCT TAAATGTCTA CCAGTCTTAC GGTCCCAGCG GCTATTATAC CCATGAATTT GATGGTGACG AGCAATTCTA CGTGGACCTG GAGAAGAAGG AGACTGTCTG GCAGCTGCCT CTGTTTAGCA AATTTACAAG TTTTGACCCG CAGGGTGCAC TGAGGAACAT AGCTACGGCA AAACATAATT TGAACATCCT GATTAAACGT TCCAACAACA CCGCGGCTGT CAATCAGGTT CCTGAGGTGA CTGTGTTTCC CAAGTCTCCA GTGATGCTGG GTCAGCCCAA CACCCTCATC TGTCATGTGG ACAACATCTT TCCTCCTGTG ATCAACATCA CGTGGTTGAA GAACGGGCAC TCTGTCACAG AAGGTTTTTC TGAGACCAGC TTCCTCTCCA AAAATGATCA TTCCTTCCTC AAGATCAGTT ATCTCACCTT CCTCCCTTCT GATGATGATT TTTATGACTG CAAAGTGGAG CACTGGGGCC TGGATAAGCC ACTTCTGAAA CACTGGGAAC CTGAGATTCC AGCCCCCATG TCAGAGCTGA CAGAGACAGT GGTCTGCGCC CTGGGATTGA TCGTGGGCCT TGTGGGCATC GTGGTGGGCA CTGTCTTCAT CATTCAAGGC CTGCGCTCAG GTGGTCCCTC TAGACACCAA GGGTCCTTGT GAGTCACACT CCAGAAGGGA AGGTGCACTG CCCGCCTACA AGAGCTGAAG AGTGGATGTG CTCAACGACC TAGAACTATT TTCTGGCCAA ATTCATCATA TACCTTCTCT CTTCCTACAT TCTTCTTCTC ACCTCTTCTC TGGAACTTAA GGTGCTGTGT CATCTCAGAA TTCATATGCC CTTGGAATCC TCTTCCTGAC CTTCTAGGTT TTTTTTCTTT TCTCAGTTGT TACCTGTTAT GGGATCTCTG AGATATCCCA CTCGGCTACC TGATCCCTCA GTGACCCTAA ACTAATATGT ACATGGAAAC AATAAATCAC TTCATGAGGT TTTTGTAAAA AAAAAAAAAA AAAA
Deduced amino acid sequence : (length: 255) [FASTA format sequence] MVPGRVLMWG ALALTAVMSA CGGEDIAADH VASYGLNVYQ SYGPSGYYTH EFDGDEQFYV DLEKKETVWQ LPLFSKFTSF DPQGALRNIA TAKHNLNILI KRSNNTAAVN QVPEVTVFPK SPVMLGQPNT LICHVDNIFP PVINITWLKN GHSVTEGFSE TSFLSKNDHS FLKISYLTFL PSDDDFYDCK VEHWGLDKPL LKHWEPEIPA PMSELTETVV CALGLIVGLV GIVVGTVFII QGLRSGGPSR HQGSL
SNP mapping information
SNP ID Rel. Chr. Location (cM)
BLAST on RefSeq (Human) : TOP
Locus Definition Score E value FL
LOC100507718 PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 2 [Homo sapiens]. 393 e-109
HLA-DQA2 HLA class II histocompatibility antigen, DQ alpha 2 chain precursor [Homo sapiens]. 385 e-107
HLA-DQA1 HLA class II histocompatibility antigen, DQ alpha 1 chain precursor [Homo sapiens]. 385 e-107
LOC100509457 PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 4 [Homo sapiens]. 345 6e-95
BLAST on RefSeq (Mouse) : TOP
Locus Definition Score E value FL
H2-Aa histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]. 342 3e-94 O
H2-Oa histocompatibility 2, O region alpha locus [Mus musculus]. 234 1e-61
H2-Ea-ps histocompatibility 2, class II antigen E alpha precursor [Mus musculus]. 220 1e-57
H2-DMa class II histocompatibility antigen, M alpha chain precursor [Mus musculus]. 79.7 4e-15
H2-DMb2 histocompatibility 2, class II, locus Mb2 [Mus musculus]. 63.5 3e-10
BLAST on RefSeq (Dog) : TOP
Locus Definition Score E value FL
HLA-DQA1 major histocompatibility complex, class II, DQ alpha [Canis lupus familiaris]. 385 e-107 O
LOC474869 PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 11 [Canis familiaris]. 235 5e-62
DLA-DRA MHC class II DR alpha chain [Canis lupus familiaris]. 230 2e-60
HLA-DOB major histocompatibility complex, class II, DO beta [Canis lupus familiaris]. 60.5 3e-09
BLAST on RefSeq (Cattle) : TOP
Locus Definition Score E value FL
HLA-DQA1 major histocompatibility complex, class II, DQ alpha 5 [Bos taurus]. 380 e-105
LOC100336394 PREDICTED: BOLA-DQA2 protein-like [Bos taurus]. 371 e-103
BOLA-DQA1 major histocompatibility complex, class II, DQ alpha, type 1 [Bos taurus]. 370 e-102
BOLA-DQA3 major histocompatibility complex, class II, DQ alpha, type 3 [Bos taurus]. 357 1e-98
BOLA-DRA major histocompatibility complex, class II, DR alpha [Bos taurus]. 225 5e-59
BLAST on RefSeq (Pig) : TOP
Locus Definition Score E value FL
SLA-DQA1 SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor [Sus scrofa]. 478 e-135
SLA-DQA SLA class II histocompatibility antigen, DQ haplotype C alpha chain precursor [Sus scrofa]. 449 e-126
SLA src-like-adapter [Sus scrofa]. 264 8e-71
SLA-DRA MHC class II DR-alpha [Sus scrofa]. 229 3e-60
LOC100513292 PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 63.5 2e-10
Oligo-microarray probe : TOP
Probe ID Rel. Probe sequence AGPOA4-07469 4.1 CCTCAGTGACCCTAAACTAATATGTACATGGAAACAATAAATCACTTCATGAGGTTTTTG
Assembly member : TOP