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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  OVRM1_0213_A06

Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)

Nucleotide sequence:   (length: 2,704)  [FASTA format sequence]
GAGCGGTGCG CGGCGGCGGC AGCGGCGGCG GTAGCTGGGC CGGGAGAGGC TGGCGCGCCG
GGCGGCTCTG CGAATCCTCC GGCATCCACC CCGGCGGGTC GCCCCCGCCC GCGGCAGCCC
CCCGAGCAGC GGCCCGGCAC CGGCGCCTTC CCGGCGGGGA GTGAACC
ATG GAGCTTCGTG
TGGGGAACAA GTACCGCCTG GGCCGGAAGA TCGGGAGCGG ATCCTTTGGA GATATCTACC
TGGGTGCCAA CATTGCCTCT GGTGAAGAAG TTGCTATCAA GCTCGAGTGT GTGAAGACAA
AGCACCCCCA GCTGCACATC GAGAGCAAGT TCTACAAGAT GATGCAGGGG GGAGTGGGAA
TCCCGTCCAT CAAGTGGTGC GGGGCCGAGG GTGACTACAA CGTGATGGTC ATGGAGTTGC
TGGGGCCCAG CCTCGAGGAC CTCTTCAACT TCTGCTCCCG AAAGTTTAGC CTCAAGACGG
TGCTGCTCCT GGCGGACCAG ATGATAAGCC GCATCGAGTA CATCCACTCC AAGAACTTCA
TCCACCGGGA CGTCAAACCC GACAACTTCC TCATGGGGCT GGGGAAGAAG GGCAACCTGG
TGTACATCAT CGACTTCGGG CTGGCCAAGA AGTACCGGGA CGCCCGCACC CACCAGCACA
TCCCCTACCG GGAAAACAAG AACTTGACCG GCACGGCCCG CTACGCCTCC ATCAACACCC
ACCTGGGCAT CGAGCAAAGC CGTCGAGATG ACCTGGAGAG TCTGGGTTAC GTGCTCATGT
ACTTCAACCT GGGCTCCCTG CCCTGGCAGG GCCTCAAGGC GGCCACCAAG CGCCAGAAGT
ATGAGCGCAT CAGCGAGAAG AAGATGTCGA CGCCCATCGA GGTCCTCTGC AAAGGCTACC
CCTCTGAGTT CTCAACATAC CTCAACTTCT GCCGTTCACT GCGGTTCGAT GACAAGCCTG
ACTACTCCTA CCTGCGCCAG CTCTTCCGCA ACCTCTTCCA CCGGCAGGGC TTCTCCTACG
ACTACGTTTT CGACTGGAAC ATGCTCAAAT TCGGTGCAGC CCGGAACCCC GAGGACGTGG
ACCGGGAGCG GCGAGAACAC GAACGCGAGG AGAGAATGGG GCAGCTCCGA GGGTCCGCGA
CTCGAGCCCT GCCCCCTGGC CCACCCACGG GGGCCACCGC CAACCGGCTC CGCAGTGCTG
CCGAGCCTGT GGCTTCCACC CCCGCCTCCC GCCTCCAGCA AGCTGGCAAT ACTTCTCCCA
GAGCGATCTC CAGGGTGGAC AGAGAGAGGA AGGTGAGCAT GAGGCTGCAC AGGGGCGCAC
CTGCCAATGT CTCGTCCTCC GACCTCACTG GGCGGCAAGA GGTCTCCCGG ATTTCAGCCT
CACAGACAAG CGTGCCATTT GACCACCTCG GGAAGTGAGG AGGAGCCACC ATCGGACCAG
TATTTGCTTA GTGTCTTCAC TGTATTTTCT TTTAAAAAAA AAAACCAACA ACAAAAAGAT
GGGGAAGAAA AACCACTCAA AAGAACAAAA AAAGACAAAA CCCAGCACAA AACTGACGAT
GGATATTGTT TCGATTCTTT TTTTTCTTCC CTTTTATTTC TTTCTTTTTT CTTTTTTCTT
TTTTCTTTTT TTTTTTGCCA ATGGCAAGAA GACGGGCTGC CCTCGGCACA GAGGATCCTT
TTCCTCCGCA TTTCCCGCTG CCCACAGCCT TGAGGCTGCC AAGCGCTCCC TACACCAGGC
TACACCTGCC AGACGCCACG GCCCCACCCC TGCTGACGCC CGACGTGGCT TGGAAGGGGG
ACTTTTCTGC ACTGGAGAGG CCACGGGTCC TCACGGGCCC TTGCAAGGTG GCCCAAGGAG
CTGGGGGGAA TGGGTTGGTT GGCCAGAGGC AGGTCCCCAC TGGGTGTTTG TGAGCCTTGG
GGCCACAGGT GTGTGCAGCC CCCACCCCCT GAGATGATGG TCACTGACTT TCTGTGCTGG
GTCTTCTCCA GTGCTTCCCT GACCGTTCGG GTCCCTTGGC CTCTCCATGG GGACCTTGAG
GAGGAGGGTC AAGAGTCCCT GTGGGCGTGT GTGTATGTTT CTGACCTGTA TCTCCCAGGA
TGGCAGGTGT CCCACCCACC TGCCAGACCG ACTCTCTGTT CTTATCCCCG CTAACAAGGA
TAGGGGTGGG CAGTGACCTC ATGTCCCTCA AGAAGGGCAC AGGCTTCGTG CCACCACCGA
GCCTGACTGT CATCAGCCTG TGGTCCCCCT TGCCTGGTCT TAGGGCAGAA TCTGTGGAGA
CTGCTTCCAG AAAGCCTCTA GCTCTTGGGT TATAGATGAA TTCCCTGGTT CTGACTCTCC
TGGGGCCTCC CCTCCCTGCG TGCTGCCTCT CTGAGGAGGA GGAGCCCAGG GTCAGGGCTG
GGCACTGGAT TTATCCATCC CTCCTAGTTA ACACCCATTC TTTCTTTATT TTGTTTTTTT
CCTGTGTGTA TTTCCTAATT TATTTACCTC TGTTTCCCCT TTTTTCTCTT TCTTTTTTTT
TAATTAAAGA GCAAAGCTTT TTATTACTTT GTAATTTAAA AAACTGAAAA AAAAATACTG
AAGAACTTTG GGGGGAATTT TGTACTTTTT TCCTGTGTAA ATATTGGACT TTTTTGAGCT
TTATTGTGGT TGTTAATTTG AAGTAATAAA GTAGAAAAGG ATAAAAAAAA AAAAAAAAAA
AAAA

Deduced amino acid sequence:  (length: 416) [FASTA format sequence]
MELRVGNKYR LGRKIGSGSF GDIYLGANIA SGEEVAIKLE CVKTKHPQLH IESKFYKMMQ
GGVGIPSIKW CGAEGDYNVM VMELLGPSLE DLFNFCSRKF SLKTVLLLAD QMISRIEYIH
SKNFIHRDVK PDNFLMGLGK KGNLVYIIDF GLAKKYRDAR THQHIPYREN KNLTGTARYA
SINTHLGIEQ SRRDDLESLG YVLMYFNLGS LPWQGLKAAT KRQKYERISE KKMSTPIEVL
CKGYPSEFST YLNFCRSLRF DDKPDYSYLR QLFRNLFHRQ GFSYDYVFDW NMLKFGAARN
PEDVDRERRE HEREERMGQL RGSATRALPP GPPTGATANR LRSAAEPVAS TPASRLQQAG
NTSPRAISRV DRERKVSMRL HRGAPANVSS SDLTGRQEVS RISASQTSVP FDHLGK


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCSNK1Ecasein kinase I isoform epsilon [Homo sapiens]. 7840.0O
Contig/Assembly ProteinCSNK1Dcasein kinase I isoform delta isoform 2 [Homo sapiens]. 6900.0O
Contig/Assembly ProteinCSNK1G3casein kinase I isoform gamma-3 isoform 3 [Homo sapiens]. 363e-100


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCsnk1ecasein kinase I isoform epsilon [Mus musculus]. 7830.0O
Contig/Assembly ProteinCsnk1dcasein kinase I isoform delta isoform 2 [Mus musculus]. 6910.0O
Contig/Assembly ProteinCsnk1a1casein kinase I isoform alpha [Mus musculus]. 476e-134
Contig/Assembly ProteinTtbk2tau-tubulin kinase 2 isoform 2 [Mus musculus]. 1682e-41


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC474510PREDICTED: similar to casein kinase 1 epsilon isoform 3 [Canis familiaris]. 7870.0O
Contig/Assembly ProteinLOC479331PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha) (CK1) isoform 3 [Canis familiaris]. 476e-134


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCSNK1Dcasein kinase 1, delta [Bos taurus]. 6900.0O
Contig/Assembly ProteinCSNK1Ecasein kinase 1 epsilon [Bos taurus]. 608e-173
Contig/Assembly ProteinCSNK1A1casein kinase I isoform alpha [Bos taurus]. 476e-134
Contig/Assembly ProteinLOC100300748PREDICTED: casein kinase I alpha-like [Bos taurus]. 452e-127
Contig/Assembly ProteinCSNK1DPREDICTED: casein kinase 1, delta [Bos taurus]. 386e-107


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinCSNK1EPREDICTED: casein kinase I isoform epsilon isoform 2 [Sus scrofa]. 7890.0
Contig/Assembly ProteinLOC100625051PREDICTED: hypothetical protein LOC100625051 [Sus scrofa]. 478e-134
Contig/Assembly ProteinCSNK1A1PREDICTED: casein kinase I isoform alpha isoform 1 [Sus scrofa]. 476e-134
Contig/Assembly ProteinTTBK2PREDICTED: tau-tubulin kinase 2 [Sus scrofa]. 1674e-41


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-042404.1ATTTTGTACTTTTTTCCTGTGTAAATATTGGACTTTTTTGAGCTTTATTGTGGTTGTTAA


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003053120030531C-0019552fwd
2003082620030826C-0058332fwd
2005032220050322C-0082892fwd
2006061120060611C-0044462fwd
2007080620070806C-0125272fwd
2008051520080515C-0104702fwd
2010100120101001C-00080710fwd
2011060120110601C-00104111fwd