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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRM1_0213_A06
Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)
Nucleotide sequence:
(length: 2,704)
[FASTA format sequence]
GAGCGGTGCG CGGCGGCGGC AGCGGCGGCG GTAGCTGGGC CGGGAGAGGC TGGCGCGCCG
GGCGGCTCTG CGAATCCTCC GGCATCCACC CCGGCGGGTC GCCCCCGCCC GCGGCAGCCC
CCCGAGCAGC GGCCCGGCAC CGGCGCCTTC CCGGCGGGGA GTGAACCATG GAGCTTCGTG
TGGGGAACAA GTACCGCCTG GGCCGGAAGA TCGGGAGCGG ATCCTTTGGA GATATCTACC
TGGGTGCCAA CATTGCCTCT GGTGAAGAAG TTGCTATCAA GCTCGAGTGT GTGAAGACAA
AGCACCCCCA GCTGCACATC GAGAGCAAGT TCTACAAGAT GATGCAGGGG GGAGTGGGAA
TCCCGTCCAT CAAGTGGTGC GGGGCCGAGG GTGACTACAA CGTGATGGTC ATGGAGTTGC
TGGGGCCCAG CCTCGAGGAC CTCTTCAACT TCTGCTCCCG AAAGTTTAGC CTCAAGACGG
TGCTGCTCCT GGCGGACCAG ATGATAAGCC GCATCGAGTA CATCCACTCC AAGAACTTCA
TCCACCGGGA CGTCAAACCC GACAACTTCC TCATGGGGCT GGGGAAGAAG GGCAACCTGG
TGTACATCAT CGACTTCGGG CTGGCCAAGA AGTACCGGGA CGCCCGCACC CACCAGCACA
TCCCCTACCG GGAAAACAAG AACTTGACCG GCACGGCCCG CTACGCCTCC ATCAACACCC
ACCTGGGCAT CGAGCAAAGC CGTCGAGATG ACCTGGAGAG TCTGGGTTAC GTGCTCATGT
ACTTCAACCT GGGCTCCCTG CCCTGGCAGG GCCTCAAGGC GGCCACCAAG CGCCAGAAGT
ATGAGCGCAT CAGCGAGAAG AAGATGTCGA CGCCCATCGA GGTCCTCTGC AAAGGCTACC
CCTCTGAGTT CTCAACATAC CTCAACTTCT GCCGTTCACT GCGGTTCGAT GACAAGCCTG
ACTACTCCTA CCTGCGCCAG CTCTTCCGCA ACCTCTTCCA CCGGCAGGGC TTCTCCTACG
ACTACGTTTT CGACTGGAAC ATGCTCAAAT TCGGTGCAGC CCGGAACCCC GAGGACGTGG
ACCGGGAGCG GCGAGAACAC GAACGCGAGG AGAGAATGGG GCAGCTCCGA GGGTCCGCGA
CTCGAGCCCT GCCCCCTGGC CCACCCACGG GGGCCACCGC CAACCGGCTC CGCAGTGCTG
CCGAGCCTGT GGCTTCCACC CCCGCCTCCC GCCTCCAGCA AGCTGGCAAT ACTTCTCCCA
GAGCGATCTC CAGGGTGGAC AGAGAGAGGA AGGTGAGCAT GAGGCTGCAC AGGGGCGCAC
CTGCCAATGT CTCGTCCTCC GACCTCACTG GGCGGCAAGA GGTCTCCCGG ATTTCAGCCT
CACAGACAAG CGTGCCATTT GACCACCTCG GGAAGTGAGG AGGAGCCACC ATCGGACCAG
TATTTGCTTA GTGTCTTCAC TGTATTTTCT TTTAAAAAAA AAAACCAACA ACAAAAAGAT
GGGGAAGAAA AACCACTCAA AAGAACAAAA AAAGACAAAA CCCAGCACAA AACTGACGAT
GGATATTGTT TCGATTCTTT TTTTTCTTCC CTTTTATTTC TTTCTTTTTT CTTTTTTCTT
TTTTCTTTTT TTTTTTGCCA ATGGCAAGAA GACGGGCTGC CCTCGGCACA GAGGATCCTT
TTCCTCCGCA TTTCCCGCTG CCCACAGCCT TGAGGCTGCC AAGCGCTCCC TACACCAGGC
TACACCTGCC AGACGCCACG GCCCCACCCC TGCTGACGCC CGACGTGGCT TGGAAGGGGG
ACTTTTCTGC ACTGGAGAGG CCACGGGTCC TCACGGGCCC TTGCAAGGTG GCCCAAGGAG
CTGGGGGGAA TGGGTTGGTT GGCCAGAGGC AGGTCCCCAC TGGGTGTTTG TGAGCCTTGG
GGCCACAGGT GTGTGCAGCC CCCACCCCCT GAGATGATGG TCACTGACTT TCTGTGCTGG
GTCTTCTCCA GTGCTTCCCT GACCGTTCGG GTCCCTTGGC CTCTCCATGG GGACCTTGAG
GAGGAGGGTC AAGAGTCCCT GTGGGCGTGT GTGTATGTTT CTGACCTGTA TCTCCCAGGA
TGGCAGGTGT CCCACCCACC TGCCAGACCG ACTCTCTGTT CTTATCCCCG CTAACAAGGA
TAGGGGTGGG CAGTGACCTC ATGTCCCTCA AGAAGGGCAC AGGCTTCGTG CCACCACCGA
GCCTGACTGT CATCAGCCTG TGGTCCCCCT TGCCTGGTCT TAGGGCAGAA TCTGTGGAGA
CTGCTTCCAG AAAGCCTCTA GCTCTTGGGT TATAGATGAA TTCCCTGGTT CTGACTCTCC
TGGGGCCTCC CCTCCCTGCG TGCTGCCTCT CTGAGGAGGA GGAGCCCAGG GTCAGGGCTG
GGCACTGGAT TTATCCATCC CTCCTAGTTA ACACCCATTC TTTCTTTATT TTGTTTTTTT
CCTGTGTGTA TTTCCTAATT TATTTACCTC TGTTTCCCCT TTTTTCTCTT TCTTTTTTTT
TAATTAAAGA GCAAAGCTTT TTATTACTTT GTAATTTAAA AAACTGAAAA AAAAATACTG
AAGAACTTTG GGGGGAATTT TGTACTTTTT TCCTGTGTAA ATATTGGACT TTTTTGAGCT
TTATTGTGGT TGTTAATTTG AAGTAATAAA GTAGAAAAGG ATAAAAAAAA AAAAAAAAAA
AAAA
Deduced amino acid sequence: (length: 416) [FASTA format sequence]
MELRVGNKYR LGRKIGSGSF GDIYLGANIA SGEEVAIKLE CVKTKHPQLH IESKFYKMMQ
GGVGIPSIKW CGAEGDYNVM VMELLGPSLE DLFNFCSRKF SLKTVLLLAD QMISRIEYIH
SKNFIHRDVK PDNFLMGLGK KGNLVYIIDF GLAKKYRDAR THQHIPYREN KNLTGTARYA
SINTHLGIEQ SRRDDLESLG YVLMYFNLGS LPWQGLKAAT KRQKYERISE KKMSTPIEVL
CKGYPSEFST YLNFCRSLRF DDKPDYSYLR QLFRNLFHRQ GFSYDYVFDW NMLKFGAARN
PEDVDRERRE HEREERMGQL RGSATRALPP GPPTGATANR LRSAAEPVAS TPASRLQQAG
NTSPRAISRV DRERKVSMRL HRGAPANVSS SDLTGRQEVS RISASQTSVP FDHLGK
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
BLAST on RefSeq (Human): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| CSNK1E | casein kinase I isoform epsilon [Homo sapiens]. | 784 | 0.0 | O |
|
| CSNK1D | casein kinase I isoform delta isoform 2 [Homo sapiens]. | 690 | 0.0 | O |
|
| CSNK1G3 | casein kinase I isoform gamma-3 isoform 3 [Homo sapiens]. | 363 | e-100 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| Csnk1e | casein kinase I isoform epsilon [Mus musculus]. | 783 | 0.0 | O |
|
| Csnk1d | casein kinase I isoform delta isoform 2 [Mus musculus]. | 691 | 0.0 | O |
|
| Csnk1a1 | casein kinase I isoform alpha [Mus musculus]. | 476 | e-134 | |
|
| Ttbk2 | tau-tubulin kinase 2 isoform 2 [Mus musculus]. | 168 | 2e-41 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LOC474510 | PREDICTED: similar to casein kinase 1 epsilon isoform 3 [Canis familiaris]. | 787 | 0.0 | O |
|
| LOC479331 | PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha) (CK1) isoform 3 [Canis familiaris]. | 476 | e-134 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| CSNK1D | casein kinase 1, delta [Bos taurus]. | 690 | 0.0 | O |
|
| CSNK1E | casein kinase 1 epsilon [Bos taurus]. | 608 | e-173 | |
|
| CSNK1A1 | casein kinase I isoform alpha [Bos taurus]. | 476 | e-134 | |
|
| LOC100300748 | PREDICTED: casein kinase I alpha-like [Bos taurus]. | 452 | e-127 | |
|
| CSNK1D | PREDICTED: casein kinase 1, delta [Bos taurus]. | 386 | e-107 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| CSNK1E | PREDICTED: casein kinase I isoform epsilon isoform 2 [Sus scrofa]. | 789 | 0.0 | |
|
| LOC100625051 | PREDICTED: hypothetical protein LOC100625051 [Sus scrofa]. | 478 | e-134 | |
|
| CSNK1A1 | PREDICTED: casein kinase I isoform alpha isoform 1 [Sus scrofa]. | 476 | e-134 | |
|
| TTBK2 | PREDICTED: tau-tubulin kinase 2 [Sus scrofa]. | 167 | 4e-41 | |
Oligo-microarray probe: TOP
Probe ID | Rel. | Probe sequence |
---|
AGPOA4-04240 | 4.1 | ATTTTGTACTTTTTTCCTGTGTAAATATTGGACTTTTTTGAGCTTTATTGTGGTTGTTAA |
Assembly member: TOP