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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  OVRM1_0223_E01

Library: OVRM1 (Ovary)
Individual: M1, Meishan (Chinese)

Nucleotide sequence:   (length: 1,388)  [FASTA format sequence]
ACTCAGTGCG CAGGTGCGAA GCCTCTTGGC TGGGGCCCTG GCCGGGGGCT GGCTTGAAGA
CGCGTCGTTT GGTTTTGGAC GCTTTGAGAG AGCCGTCTGG TATCAACCGC TGGGCGGAAG
GCGTTTGTCA GGGGCCCGGC CACGAACGAG GCCCACGAGT TTCCCGATGG TGTCCATGAC
TTTCAAGCGG CTGTTGCCAT GTCCGCACCG GGACGATCAT CCTGGGGACC TGGTAC
ATGG
TGATCAATCT GTTGATGGCA ATTTTGCTGA CTGTTGAGGT GACACATCCA AACTCAGTGC
CAGCTGTCAA CATTCAGTAT GGAGTCATTG GCAATTACTA TTCATCTGAG AGAATGGCAG
ATAATGCCTG TGTTCTTTTT GCGGTCTCTG TTCTTATGTT TATAATCAGT TCAATGCTGG
TTTATGGAGC AATTTCTTAT CAAGTGGGTT GGTTGATTCC ATTCTTCTGT TACCGGCTTT
TTGACTTCGT TCTCAGCTGC CTGGTTGCTA TCAGTTCTCT AACTTACTTG CCAAGAATCA
AAGAATATCT GGATCAATTA CCTGATTTCC CCTATAAAGA CGACCTCCTG GCATTGGACT
CCAGCTGCCT CCTGTTCATT GTTCTTGTGT TCTTTGCCTT GTTCATCATT TTTAAGGCTT
ATCTAATCAA CTGTGTTTGG AACTGTTACA AATACATCAA CAACAGAAAC ATGCCAGAGA
TTGCTGTGTA TCCTGCCTTT GAAGCACCTC CACAGTATGT TTTGCCAACC TATGAAATGG
CAGTGAAGAT GCCTGAGAAA GAACCCCCGC CTCCTTACAT ACCTGCCTGA AGAAATGCTG
CCTTTGTCAA TAAACCCTAT ACCAGCTTTT CGTCTTGTTT ATTTTACAGA ATGCTGCAAT
ACAGGGCTCT TCAAACTTGT TTGATATAAA GTACATTTTA CTTTAAGCAT TTATTTTCAA
ACACTAACAA GCTTGTTGGA TATCTATGAA AAGACTTTTG TTGTTTTGTT CAGTATATTA
CATTTTAATA GTTTTTGAAG ACAATCTAGG TTAAGAGCAA AATGCCATTG TTTGCCTTTG
ATTGGGGGGT GGGGAGGGGG CATTCTCCAC ACATAATCTT TTTTAACTTT GCACTTTCTT
CATATCACAG TTTGTATTTT GGTTATTTGC TGCCCTGGAT ACTTTCAGGA AGAATGAAGT
AAATACTCGG GGTGGGCAAG TTTAGTATAA GATCTGAAGT TTTCAGCTGT GAAAAAAACA
AAAAATATAC TACATTTTAT CTTGACTGTG GGTGATGATG GTTGCATGTT TCTAATTTGT
ACGTGTTTCC ATCTTTGTGA TAAGATGCTT TAATAAATCT CTTAAATATT AAAAAAAAAA
AAAAAAAA

Deduced amino acid sequence:  (length: 197) [FASTA format sequence]
MVINLLMAIL LTVEVTHPNS VPAVNIQYGV IGNYYSSERM ADNACVLFAV SVLMFIISSM
LVYGAISYQV GWLIPFFCYR LFDFVLSCLV AISSLTYLPR IKEYLDQLPD FPYKDDLLAL
DSSCLLFIVL VFFALFIIFK AYLINCVWNC YKYINNRNMP EIAVYPAFEA PPQYVLPTYE
MAVKMPEKEP PPPYIPA


SNP mapping information
SNP IDRel.Chr.Location (cM)
SNP0007670.9b3138.7
SNP0007670.91b3145


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLAPTM4Alysosomal-associated transmembrane protein 4A [Homo sapiens]. 3518e-97O
Contig/Assembly ProteinLAPTM4Blysosomal-associated transmembrane protein 4B [Homo sapiens]. 1529e-37


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLaptm4alysosomal-associated transmembrane protein 4A [Mus musculus]. 348e-107
Contig/Assembly ProteinLaptm4blysosomal-associated transmembrane protein 4B [Mus musculus]. 1502e-36O
Contig/Assembly ProteinLaptm5lysosomal-associated transmembrane protein 5 [Mus musculus]. 50.43e-06


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC475678PREDICTED: similar to lysosomal-associated protein transmembrane 4 alpha [Canis familiaris]. 3533e-97O
Contig/Assembly ProteinLOC475042PREDICTED: similar to lysosomal-associated transmembrane protein 4 beta [Canis familiaris]. 1495e-36


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLAPTM4Alysosomal-associated transmembrane protein 4A [Bos taurus]. 3533e-97O
Contig/Assembly ProteinLAPTM4Blysosomal-associated transmembrane protein 4B [Bos taurus]. 1541e-37O
Contig/Assembly ProteinLOC524129PREDICTED: lysosomal-associated protein transmembrane 4B-like [Bos taurus]. 1202e-27O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100516188PREDICTED: lysosomal-associated transmembrane protein 4A-like [Sus scrofa]. 3547e-98


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-094204.1GTGATGATGGTTGCATGTTTCTAATTTGTACGTGTTTCCATCTTTGTGATAAGATGCTTT


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003053120030531C-0019052fwd
2003082620030826C-0061062fwd
2004020420040204C-0034412fwd
2005032220050322C-0082602fwd
2006061120060611C-0104282fwd
2007080620070806C-0127052fwd
2008051520080515C-0107292fwd
2010100120101001C-0101612fwd
2011060120110601C-0021362fwd