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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRT1_0036_B01
Library: OVRT1 (Ovary)
Individual: D2-14C, Unknown
Nucleotide sequence:
(length: 1,486)
[FASTA format sequence]
TAAGTCCTGA AAAGGGGCAC TTTCCAGCAG CTGCGGCCAG CGGTGCCGAC GTCAGGCCCT
CCCCCAGCGG TGCTGACGTC GACGGCCGGG CAGGGTGACC TCATCGCCCC GACGGCGGCC
CTGCCGGGGG CGGGGAGAGG CAGGGGCGGC CCCCCGGCGT AGGCAAAGGC TCGGGGGCCG
GGGCGCGGCT GCTGCAGCTC TTGCAAGAGC AGAGCCGAGC CGAGCGCCCG CCGCTGCCCG
CCGCCCGCTG CGTGCGCCTC CGCGCCATGG CTGGCCTCAA CTCCCTGGAG GCGGTGAAAC
GCAAGATCCA GGCCCTGCAG CAGCAGGCGG ACGAGGCAGA GGATCGCGCG CAGGGCCTGC
AGCGGGAGCT GGACGGCGAG CGCGAGCGGC GGGAGAAAGC CGAAGGGGAT GTAGCAGCTC
TCAATCGGCG CATCCAACTC GTTGAGGAGG AGTTGGACAG GGCTCAGGAA CGACTGGCCA
CAGCCCTGCA GAAGCTTGAG GAGGCAGAAA AGGCTGCAGA TGAGAGCGAG AGAGGAATGA
AGGTGATAGA AAACCGGGCC ATGAAAGATG AGGAGAAGAT GGAGATTCAG GAGATGCAGC
TCAAAGAGGC CAAGCACATT GCCGAGGAGG CCGACCGCAA ATACGAGGAG GTAGCTCGTA
AGTTGGTCAT CCTGGAGGGC GAGCTGGAGA GGGCAGAGGA GCGTGCCGAG GTGTCTGAAC
TAAAATGTGG TGACCTGGAA GAAGAACTCA AGAATGTCAC CAACAACCTG AAGTCGCTAG
AGGCTGCATC TGAAAAGTAT TCTGAAAAGG AGGATAAATA TGAAGAAGAG ATTAAACTTC
TGTCTGACAA ACTGAAAGAG GCTGAGACCC GTGCTGAATT TGCAGAGAGA ACAGTTGCAA
AACTGGAAAA GACCATCGAT GACCTGGAAG AAAAACTTGC CCAGGCCAAA GAAGAGAACG
TGGGCTTACA TCAGACACTG GATCAGACAC TAAACGAACT AAACTGTATA TAACCAAAAC
AGAAGAGTCT CGTTCCATCA GAAACTCCAG AGCTACGTGT TTTTCTCTTC TCTTGTAAGA
AGTTTCTTTT GTTATTGCCT CTTTGCTTTG CTGGAAATGT CAAGCAAATT ATGAATACGT
GACCAAATAT TTTGTATCAG AAAAGCTTTG AGCACCAGTT AAATCTATTC CTTCCTTTTT
TTCAAGTGGC ACCAGCTTTT TCAGCTCTAT TTTTATCCTT AAATTGCATT TATTCCTAAA
GTAGGCAGGG TATTTCATAT TGAGCATACT CTCTTAAGAC TGAGGGCATT TGGTTCCTGG
GAGAATAGAC AACCCCACAC TTTAAAAATA CAGACTCCAA TGTCTAGTCA TGGGTCAATT
TAAAAAGTTG AAGAATATCC ACTGCTGGTC ACACTATAGG AGGCCAGGGA CCATCACATT
AAAATGAGTG GGGATTTTCC AGCCAGAGTA AAAAAAAAAA AAAAAA
Deduced amino acid sequence: (length: 248) [FASTA format sequence]
MAGLNSLEAV KRKIQALQQQ ADEAEDRAQG LQRELDGERE RREKAEGDVA ALNRRIQLVE
EELDRAQERL ATALQKLEEA EKAADESERG MKVIENRAMK DEEKMEIQEM QLKEAKHIAE
EADRKYEEVA RKLVILEGEL ERAEERAEVS ELKCGDLEEE LKNVTNNLKS LEAASEKYSE
KEDKYEEEIK LLSDKLKEAE TRAEFAERTV AKLEKTIDDL EEKLAQAKEE NVGLHQTLDQ
TLNELNCI
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TPM4 | tropomyosin alpha-4 chain isoform 2 [Homo sapiens]. | 281 | 1e-75 | |
|
| TPM3 | tropomyosin alpha-3 chain isoform 4 [Homo sapiens]. | 213 | 3e-55 | |
|
| TPM2 | tropomyosin beta chain isoform 2 [Homo sapiens]. | 184 | 2e-46 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tpm4 | tropomyosin alpha-4 chain [Mus musculus]. | 271 | 1e-72 | |
|
| Tpm1 | tropomyosin alpha-1 chain isoform 6 [Mus musculus]. | 223 | 2e-58 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC609879 | PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis familiaris]. | 235 | 7e-62 | |
|
| TPM1 | PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 19 [Canis familiaris]. | 224 | 2e-58 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Bos taurus]. | 235 | 7e-62 | |
|
| TPM3 | PREDICTED: tropomyosin 4-like [Bos taurus]. | 193 | 3e-49 | |
|
| TPM3 | tropomyosin alpha-3 chain [Bos taurus]. | 176 | 4e-44 | |
|
| LOC784223 | PREDICTED: tropomyosin 4 [Bos taurus]. | 164 | 2e-40 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Sus scrofa]. | 281 | 9e-76 | |
|
| TPM3 | tropomyosin alpha-3 chain [Sus scrofa]. | 197 | 1e-50 | |
|
| TPM2 | tropomyosin beta chain [Sus scrofa]. | 177 | 1e-44 | |
|
| LOC100620599 | PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa]. | 175 | 5e-44 | |
|
| TPM1 | tropomyosin alpha-1 chain [Sus scrofa]. | 172 | 6e-43 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07957 | 4.1 | AAGAATATCCACTGCTGGTCACACTATAGGAGGCCAGGGACCATCACATTAAAATGAGTG |
Assembly member: TOP