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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRT1_0047_B01
Library: OVRT1 (Ovary)
Individual: D2-14C, Unknown
Nucleotide sequence:
(length: 1,376)
[FASTA format sequence]
GACGGCGGCC CTGCCGGGGG CGGGGAGAGG CAGGGGCGGC CCCCCGGCGT AGGCAAAGGC
TCGGGGGCCG GGGCGCGGCT GCTGCAGCTC TTGCAAGAGC AGAGCCGAGC CGAGCGCCCG
CCGCTGCCCG CCGCCCGCTG CGTGCGCCTC CGCGCCATGG CTGGCCTCAA CTCCCTGGAG
GCGGTGAAAC GCAAGATCCA GGCCCTGCAG CAGCAGGCGG ACGAGGCAGA GGATCGCGCG
CAGGGCCTGC AGCGGGAGCT GGACGGCGAG CGCGAGCGGC GGGAGAAAGC CGAAGGGGAT
GTAGCAGCTC TCAATCGGCG CATCCAACTC GTTGAGGAGG AGTTGGACAG GGCTCAGGAA
CGACTGGCCA CAGCCCTGCA GAAGCTTGAG GAGGCAGAAA AGGCTGCAGA TGAGAGCGAG
AGAGGAATGA AGGTGATAGA AAACCGGGCC ATGAAAGATG AGGAGAAGAT GGAGATTCAG
GAGATGCAGC TCAAAGAGGC CAAGCACATT GCCGAGGAGG CCGACCGCAA ATACGAGGAG
GTAGCTCGTA AGTTGGTCAT CCTGGAGGGC GAGCTGGAGA GGGCAGAGGA GCGTGCCGAG
GTGTCTGAAC TAAAATGTGG TGACCTGGAA GAAGAACTCA AGAATGTCAC CAACAACCTG
AAGTCGCTAG AGGCTGCATC TGAAAAGTAT TCTGAAAAGG AGGATAAATA TGAAGAAGAG
ATTAAACTTC TGTCTGACAA ACTGAAAGAG GCTGAGACCC GTGCTGAATT TGCAGAGAGA
ACAGTTGCAA AACTGGAAAA GACCATCGAT GACCTGGAAG AAAAACTTGC CCAGGCCAAA
GAAGAGAACG TGGGCTTACA TCAGACACTG GATCAGACAC TAAACGAACT AAACTGTATA
TAACCAAAAC AGAAGAGTCT CGTTCCATCA GAAACTCCAG AGCTACGTGT TTTTCTCTTC
TCTTGTAAGA AGTTTCTTTT GTTATTGCCT CTTTGCTTTG CTGGAAATGT CAAGCAAATT
ATGAATACGT GACCAAATAT TTTGTATCAG AAAAGCTTTG AGCACCAGTT AAATCTATTC
CTTCCTTTTT TTCAAGTGGC ACCAGCTTTT TCAGCTCTAT TTTTATCCTT AAATTGCATT
TATTCCTAAA GTAGGCAGGG TATTTCATAT TGAGCATACT CTCTTAAGAC TGAGGGCATT
TGGTTCCTGG GAGAATAGAC AACCCCACAC TTTAAAAATA CAGACTCCAA TGTCTAGTCA
TGGGTCAATT TAAAAAGTTG AAGAATATCC ACTGCTGGTC ACACTATAGG AGGCCAGGGA
CCATCACATT AAAATGAGTG GGGATTTTCC AGCCAGAGTA AAAAAAAAAA AAAAAA
Deduced amino acid sequence: (length: 248) [FASTA format sequence]
MAGLNSLEAV KRKIQALQQQ ADEAEDRAQG LQRELDGERE RREKAEGDVA ALNRRIQLVE
EELDRAQERL ATALQKLEEA EKAADESERG MKVIENRAMK DEEKMEIQEM QLKEAKHIAE
EADRKYEEVA RKLVILEGEL ERAEERAEVS ELKCGDLEEE LKNVTNNLKS LEAASEKYSE
KEDKYEEEIK LLSDKLKEAE TRAEFAERTV AKLEKTIDDL EEKLAQAKEE NVGLHQTLDQ
TLNELNCI
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TPM4 | tropomyosin alpha-4 chain isoform 2 [Homo sapiens]. | 281 | 1e-75 | |
|
| TPM3 | tropomyosin alpha-3 chain isoform 4 [Homo sapiens]. | 213 | 3e-55 | |
|
| TPM2 | tropomyosin beta chain isoform 2 [Homo sapiens]. | 184 | 2e-46 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tpm4 | tropomyosin alpha-4 chain [Mus musculus]. | 271 | 9e-73 | |
|
| Tpm1 | tropomyosin alpha-1 chain isoform 6 [Mus musculus]. | 223 | 2e-58 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC609879 | PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis familiaris]. | 235 | 7e-62 | |
|
| TPM1 | PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 19 [Canis familiaris]. | 224 | 2e-58 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Bos taurus]. | 235 | 6e-62 | |
|
| TPM3 | PREDICTED: tropomyosin 4-like [Bos taurus]. | 193 | 3e-49 | |
|
| TPM3 | tropomyosin alpha-3 chain [Bos taurus]. | 176 | 3e-44 | |
|
| LOC784223 | PREDICTED: tropomyosin 4 [Bos taurus]. | 164 | 2e-40 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Sus scrofa]. | 281 | 8e-76 | |
|
| TPM3 | tropomyosin alpha-3 chain [Sus scrofa]. | 197 | 1e-50 | |
|
| TPM2 | tropomyosin beta chain [Sus scrofa]. | 177 | 1e-44 | |
|
| LOC100620599 | PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa]. | 175 | 5e-44 | |
|
| TPM1 | tropomyosin alpha-1 chain [Sus scrofa]. | 172 | 5e-43 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07957 | 4.1 | AAGAATATCCACTGCTGGTCACACTATAGGAGGCCAGGGACCATCACATTAAAATGAGTG |
Assembly member: TOP