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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
OVRT1_0067_H10
Library: OVRT1 (Ovary)
Individual: D2-14C, Unknown
Nucleotide sequence:
(length: 1,024)
[FASTA format sequence]
GCATAAATAG GCTGGAGGAG ACCGGGCGGT CAGAGACCGC TGGCGCATCG AGGTCACCCA
CGTCCCTTCA GGATGAAAGC CGTGGTGCTG ACCTTGGCTG TGCTCTTCCT CACAGGGAGC
CAGGCTCGGC ATTTCTGGCA GCAAGATGAC CCGCAGTCAC CCTGGGATCG GGTGAAGGAT
TTTGCCACCG TGTATGTGGA TGCGATCAAA GACAGTGGCA GAGATTATGT GGCCCAGTTT
GAAGCCTCCG CTTTGGGAAA ACACCTCAAC CTGAAACTCC TGGACAACTG GGACAGCCTG
GGCAGCACGT TCACCAAAGT GCGTGAGCAG CTGGGCCCAG TGACCCAGGA GTTCTGGGAC
AACCTGGAAA AGGAGACCGA GGCGCTGCGG CAGGAGATGA GCAAGGACCT GGAGGAGGTG
AAGAAGAAGG TGCAGCCCTA CCTGGACGAC TTCCAGAACA AGTGGCAGGA GGAGATGGAG
ACGTACCGCC AGAAGATGGC GCCGCTGGGC GCCGAGTTCC GCGAGGGCGC GCGCCAGAAG
GTGCAGGAGC TGCAGGAGAA GCTGAGCCCG CTGGCCGAGG AGCTCCGCGA CCGCCTGCGC
GCCCACGTGG AGGCGCTGCG CCAGCAGCTG GCGCCCTACA GCGACGACCT GCGCCAGCGC
ATGGCCGCCC GCTTCGAGGC GCTCAAGGAG GGCGGCGGCA GCCTGGCCGA GTACCAGGCC
AAGGCCCAGG AGCAGCTGAA AGCGCTGGGC GAGAAGGCCA AGCCGGCGCT GGAGGACCTC
CGCCAGGGCC TGCTGCCCGT GCTGGAGAAC CTCAAGGTCA GCATCCTGGC CGCCATCGAC
GAGGCCTCCA AGAAGCTGAA CGCCCAGTGA GACGCCCTCC GCCCGCGCTC CCCTCGCCAT
CAGTTCGGCT TCTTGGAATA AGCAGTTCCG GAGCAGGACG CTTGTGATGG GTTGTATTTT
TTTGTGAAGC TTCGATGTTG ATTTTTAAAC AATAAAAAGT TCTCCAAAAA AAAAAAAAAA
AAAA
Deduced amino acid sequence: (length: 265) [FASTA format sequence]
MKAVVLTLAV LFLTGSQARH FWQQDDPQSP WDRVKDFATV YVDAIKDSGR DYVAQFEASA
LGKHLNLKLL DNWDSLGSTF TKVREQLGPV TQEFWDNLEK ETEALRQEMS KDLEEVKKKV
QPYLDDFQNK WQEEMETYRQ KMAPLGAEFR EGARQKVQEL QEKLSPLAEE LRDRLRAHVE
ALRQQLAPYS DDLRQRMAAR FEALKEGGGS LAEYQAKAQE QLKALGEKAK PALEDLRQGL
LPVLENLKVS ILAAIDEASK KLNAQ
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | APOA1 | apolipoprotein A-I preproprotein [Homo sapiens]. | 404 | e-113 | |
|
| APOA4 | apolipoprotein A-IV precursor [Homo sapiens]. | 94.7 | 1e-19 | |
|
| APOE | apolipoprotein E precursor [Homo sapiens]. | 60.1 | 3e-09 | |
|
| APOA5 | apolipoprotein A-V precursor [Homo sapiens]. | 54.7 | 1e-07 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Apoa1 | apolipoprotein A-I preproprotein [Mus musculus]. | 342 | 3e-94 | |
|
| Apoa4 | apolipoprotein A-IV precursor [Mus musculus]. | 78.6 | 7e-15 | |
|
| Apoe | apolipoprotein E precursor [Mus musculus]. | 69.3 | 5e-12 | |
|
| Apoa5 | apolipoprotein A-V precursor [Mus musculus]. | 53.1 | 3e-07 | |
|
| Myh9 | myosin-9 isoform 1 [Mus musculus]. | 50.4 | 2e-06 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC479427 | PREDICTED: similar to Apolipoprotein A-I precursor (Apo-AI) (ApoA-I) [Canis familiaris]. | 436 | e-122 | |
|
| LOC489392 | PREDICTED: similar to Apolipoprotein A-IV precursor (Apo-AIV) (ApoA-IV) [Canis familiaris]. | 95.9 | 6e-20 | |
|
| APOE | PREDICTED: similar to Apolipoprotein E precursor (Apo-E) isoform 4 [Canis familiaris]. | 68.6 | 9e-12 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| APOA1 | apolipoprotein A-I preproprotein [Bos taurus]. | 445 | e-125 | |
|
| LOC100297695 | PREDICTED: apolipoprotein A-I-like [Bos taurus]. | 288 | 5e-78 | |
|
| APOA4 | apolipoprotein A-IV precursor [Bos taurus]. | 97.1 | 2e-20 | |
|
| APOE | apolipoprotein E precursor [Bos taurus]. | 53.5 | 3e-07 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| APOA1 | apolipoprotein A-I preproprotein [Sus scrofa]. | 484 | e-137 | |
|
| APOA4 | apolipoprotein A-IV precursor [Sus scrofa]. | 101 | 8e-22 | |
|
| APOE | apolipoprotein E precursor [Sus scrofa]. | 68.6 | 5e-12 | |
|
| APOA5 | apolipoprotein A-V [Sus scrofa]. | 65.1 | 6e-11 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07837 | 4.1 | GTTCGGCTTCTTGGAATAAGCAGTTCCGGAGCAGGACGCTTGTGATGGGTTGTATTTTTT |
Assembly member: TOP