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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
PBL01_0026_E04
Library: PBL01 (PBMC)
Individual: LWD5, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,165)
[FASTA format sequence]
GAGCCGAGCC GAGCGCCCGC CGCTGCCCGC CGCCCGCTGC GTGCGCCTCC GCGCCATGGC
TGGCCTCAAC TCCCTGGAGG CGGTGAAACG CAAGATCCAG GCCCTGCAGC AGCAGGCGGA
CGAGGCAGAG GATCGCGCGC AGGGCCTGCA GCGGGAGCTG GACGGCGAGC GCGAGCGGCG
GGAGAAAGCC GAAGGGGATG TAGCAGCTCT CAATCGGCGC ATCCAACTCG TTGAGGAGGA
GTTGGACAGG GCTCAGGAAC GACTGGCCAC AGCCCTGCAG AAGCTTGAGG AGGCAGAAAA
GGCTGCAGAT GAGAGCGAGA GAGGAATGAA GGTGATAGAA AACCGGGCCA TGAAAGATGA
GGAGAAGATG GAGATTCAGG AGCGTGCCGA GGTGTCTGAA CTAAAATGTG GTGACCTGGA
AGAAGAACTC AAGAATGTCA CCAACAACCT GAAGTCGCTA GAGGCTGCAT CTGAAAAGTA
TTCTGAAAAG GAGGATAAAT ATGAAGAAGA GATTAAACTT CTGTCTGACA AACTGAAAGA
GGCTGAGACC CGTGCTGAAT TTGCAGAGAG AACAGTTGCA AAACTGGAAA AGACCATCGA
TGACCTGGAA GAAAAACTTG CCCAGGCCAA AGAAGAGAAC GTGGGCTTAC ATCAGACACT
GGATCAGACA CTAAACGAAC TAAACTGTAT ATAACCAAAA CAGAAGAGTC TCGTTCCATC
AGAAACTCCA GAGCTACGTG TTTTTCTCTT CTCTTGTAAG AAGTTTCTTT TGTTATTGCC
TCTTTGCTTT GCTGGAAATG TCAAGCAAAT TATGAATACG TGACCAAATA TTTTGTATCA
GAAAAGCTTT GAGCACCAGT TAAATCTATT CCTTCCTTTT TTTCAAGTGG CACCAGCTTT
TTCAGCTCTA TTTTTATCCT TAAATTGCAT TTATTCCTAA AGTAGGCAGG GTATTTCATA
TTGAGCATAC TCTCTTAAGA CTGAGGGCAT TTGGTTCCTG GGAGAATAGA CAACCCCACA
CTTTAAAAAT ACAGACTCCA ATGTCTAGTC ATGGGTCAAT TTAAAAAGTT GAAGAATATC
CACTGCTGGT CACACTATAG GAGGCCAGGG ACCATCACAT TAAAATGAGT GGGGATTTTC
CAGCCAGAGT AAAAAAAAAA AAAAA
Deduced amino acid sequence: (length: 212) [FASTA format sequence]
MAGLNSLEAV KRKIQALQQQ ADEAEDRAQG LQRELDGERE RREKAEGDVA ALNRRIQLVE
EELDRAQERL ATALQKLEEA EKAADESERG MKVIENRAMK DEEKMEIQER AEVSELKCGD
LEEELKNVTN NLKSLEAASE KYSEKEDKYE EEIKLLSDKL KEAETRAEFA ERTVAKLEKT
IDDLEEKLAQ AKEENVGLHQ TLDQTLNELN CI
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TPM4 | tropomyosin alpha-4 chain isoform 2 [Homo sapiens]. | 224 | 9e-59 | O |
|
| TPM3 | tropomyosin alpha-3 chain isoform 4 [Homo sapiens]. | 159 | 6e-39 | |
|
| TPM2 | tropomyosin beta chain isoform 2 [Homo sapiens]. | 130 | 3e-30 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tpm4 | tropomyosin alpha-4 chain [Mus musculus]. | 219 | 3e-57 | O |
|
| Tpm1 | tropomyosin alpha-1 chain isoform 6 [Mus musculus]. | 170 | 2e-42 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC609879 | PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis familiaris]. | 179 | 4e-45 | |
|
| TPM1 | PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 19 [Canis familiaris]. | 170 | 2e-42 | O |
|
| LOC480137 | PREDICTED: similar to tropomyosin 3 isoform 2 isoform 25 [Canis familiaris]. | 142 | 5e-34 | O |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Bos taurus]. | 179 | 4e-45 | O |
|
| TPM3 | PREDICTED: tropomyosin 4-like [Bos taurus]. | 139 | 6e-33 | |
|
| TPM3 | tropomyosin alpha-3 chain [Bos taurus]. | 122 | 8e-28 | |
|
| LOC784223 | PREDICTED: tropomyosin 4 [Bos taurus]. | 112 | 6e-25 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Sus scrofa]. | 224 | 5e-59 | O |
|
| TPM3 | tropomyosin alpha-3 chain [Sus scrofa]. | 142 | 3e-34 | O |
|
| TPM2 | tropomyosin beta chain [Sus scrofa]. | 127 | 9e-30 | |
|
| LOC100620599 | PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa]. | 120 | 1e-27 | |
|
| TPM1 | tropomyosin alpha-1 chain [Sus scrofa]. | 118 | 5e-27 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07957 | 4.1 | AAGAATATCCACTGCTGGTCACACTATAGGAGGCCAGGGACCATCACATTAAAATGAGTG |
Assembly member: TOP