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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
PBL01_0038_E12
Library: PBL01 (PBMC)
Individual: LWD5, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,227)
[FASTA format sequence]
CACAGTACCC ATTTGAGTGG GACTTGCCTG CTCCCCTTAC ACACTGTCCT CTCCTGTTCT
CCAGCATGTT GCATCTGTGT TTCTCCAGAG GCTTCTGGAT GGCAGCTCTG ACTGTGATGC
TGGTGGTGCT GAGCCCTCCC TTGGCTTTGG CCAGGGACAC CCCACCGCAT TTCTTGTACC
TGTTGAAATT CGAGTGTCAT TTCTTCAATG GGACCGAGCG GGTGAGGTTA TTGGAGAGGC
AGTACTATAA CGGAGAGGAG TACGTGCGCT TCGACAGCGA CGTGGGCGAG TACCGGGCGG
TGACCGAGCT GGGGCGGCCG GTCGCCAAGA ACTGGAACAG CCAGAAGGAC CTCCTGGAGC
AGAGGCGGGC GGAGGTGGAC ACGTACTGCA GACACAACTA CAGGACCTCG GATACATTCC
TCGTGCCGCG GCGAGCTGAG CCCAGAGTGA CGGTGTACCC TGCAAAGACC CAGCCCCTGC
AGCACCACAA CCTCCTGGTC TGCTCTGTGA CCGGGTTCTA CCCAGGCCAC GTGGAGGTCA
GGTGGTTCCG GAATGGCCAG GAAGAGGCGG CGGGGGTGGT CTCCACAGGC CTGATCCCTA
ATGGAGACTG GACCTTCCAG ACCATGGTGA TGCTTGAAAC GGTTCCTCAG AGTGGAGAGG
TCTACAGCTG CCGAGTGGAG CACCCCAGCC TGACGAGCCC CGTCACAGTG GAATGGAGGG
CACGGTCTGA ATCTGCTCAG GGCAAGATGA TGAGTGAGGT CGGGGGCTTC GTCCTGGGTC
TGCTCTTTGT TGCTGTGGGG CTGTTCATCT ACTTCAAGAA TCAGAAAGGA CGCCCTGCCC
TTCAGCCAAC AGGCCTCCTG AGCTGAAGTG CAGGTGGTGA CACTCCAAGC AAGCATCCTC
TGTGCCAGTG TCTTCACAGC ATGAGAAGGC TCCTGCTATG CTCTGCGTCC TCCCCCAGGA
GAGCTCTTCC TCAGACTCTC CTTTGCTCCT GGTTCAGGGA CCCTGCAGAA AAGGTCTTTT
GATGGCTTTT TCAGCCTCCC CCCTTTGACT TGGAAGTTCC TGGCATTGAT TGCTGTGCCT
ATATTCATTT TTCTTTTTTT TTTTTCCTGG TTGGTCCCTG TTGTTTTCGA CGTTACTGCC
TCCTGTGCAT CTGAACTCAT CCACTGCCCA TATTACCTTA TTATGTTTTT CTCAAATAAA
TATGGAGTGA CAAAAAAAAA AAAAAAA
Deduced amino acid sequence: (length: 266) [FASTA format sequence]
MLHLCFSRGF WMAALTVMLV VLSPPLALAR DTPPHFLYLL KFECHFFNGT ERVRLLERQY
YNGEEYVRFD SDVGEYRAVT ELGRPVAKNW NSQKDLLEQR RAEVDTYCRH NYRTSDTFLV
PRRAEPRVTV YPAKTQPLQH HNLLVCSVTG FYPGHVEVRW FRNGQEEAAG VVSTGLIPNG
DWTFQTMVML ETVPQSGEVY SCRVEHPSLT SPVTVEWRAR SESAQGKMMS EVGGFVLGLL
FVAVGLFIYF KNQKGRPALQ PTGLLS
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | LOC100507714 | PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 2 [Homo sapiens]. | 385 | e-107 | |
|
| LOC100507709 | PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 2 [Homo sapiens]. | 385 | e-107 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| H2-Eb1 | H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. | 370 | e-103 | O |
|
| H2-Eb2 | histocompatibility 2, class II antigen E beta2 [Mus musculus]. | 300 | 2e-81 | |
|
| H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]. | 280 | 1e-75 | |
|
| H2-Ob | histocompatibility 2, O region beta locus [Mus musculus]. | 254 | 7e-68 | |
|
| H2-T24 | histocompatibility 2, T region locus 24 [Mus musculus]. | 67.8 | 2e-11 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| HLA-DRB1 | DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris]. | 387 | e-107 | O |
|
| HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. | 320 | 1e-87 | |
|
| HLA-DOB | major histocompatibility complex, class II, DO beta [Canis lupus familiaris]. | 270 | 3e-72 | O |
|
| LOC607827 | PREDICTED: similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) [Canis familiaris]. | 71.6 | 1e-12 | |
|
| DLA-12 | MHC class I DLA-12 [Canis lupus familiaris]. | 67.4 | 3e-11 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| BoLA-DRB3 | major histocompatibility complex, class II, DRB3 [Bos taurus]. | 402 | e-112 | O |
|
| LOC786695 | PREDICTED: major histocompatibility complex, class II, DR beta 3-like [Bos taurus]. | 387 | e-107 | |
|
| BOLA-DRB2 | PREDICTED: histocompatibility complex, class II, DR beta 2 [Bos taurus]. | 335 | 5e-92 | |
|
| BOLA-DOB | major histocompatibility complex, class II, DO beta [Bos taurus]. | 249 | 5e-66 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| SLA-DRB1 | MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa]. | 484 | e-137 | |
|
| LOC100519552 | PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. | 363 | e-100 | |
|
| LOC100513292 | PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. | 348 | 3e-96 | |
|
| SLA-DQB1 | SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa]. | 304 | 6e-83 | |
|
| LOC100153694 | PREDICTED: hereditary hemochromatosis protein homolog [Sus scrofa]. | 75.1 | 7e-14 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-14720 | 4.1 | CCTGTGCATCTGAACTCATCCACTGCCCATATTACCTTATTATGTTTTTCTCAAATAAAT |
Assembly member: TOP