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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
PST01_0069_F06
Library: PST01 (Prostate)
Individual: LWD10, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,319)
[FASTA format sequence]
GGCTCGGGGG CCGGGGCGCG GCTGCTGCAG CTCTTGCAAG AGCAGAGCCG AGCCGAGCGC
CCGCCGCTGC CCGCCGCCCG CTGCGTGCGC CTCCGCGCCA TGGCTGGCCT CAACTCCCTG
GAGGCGGTGA AACGCAAGAT CCAGGCCCTG CAGCAGCAGG CGGACGAGGC AGAGGATCGC
GCGCAGGGCC TGCAGCGGGA GCTGGACGGC GAGCGCGAGC GGCGGGAGAA AGCCGAAGGG
GATGTAGCAG CTCTCAATCG GCGCATCCAA CTCGTTGAGG AGGAGTTGGA CAGGGCTCAG
GAACGACTGG CCACAGCCCT GCAGAAGCTT GAGGAGGCAG AAAAGGCTGC AGATGAGAGC
GAGAGAGGAA TGAAGGTGAT AGAAAACCGG GCCATGAAAG ATGAGGAGAA GATGGAGATT
CAGGAGATGC AGCTCAAAGA GGCCAAGCAC ATTGCCGAGG AGGCCGACCG CAAATACGAG
GAGGTAGCTC GTAAGTTGGT CATCCTGGAG GGCGAGCTGG AGAGGGCAGA GGAGCGTGCC
GAGGTGTCTG AACTAAAATG TGGTGACCTG GAAGAAGAAC TCAAGAATGT CACCAACAAC
CTGAAGTCGC TAGAGGCTGC ATCTGAAAAG TATTCTGAAA AGGAGGATAA ATATGAAGAA
GAGATTAAAC TTCTGTCTGA CAAACTGAAA GAGGCTGAGA CCCGTGCTGA ATTTGCAGAG
AGAACAGTTG CAAAACTGGA AAAGACCATC GATGACCTGG AAGAAAAACT TGCCCAGGCC
AAAGAAGAGA ACGTGGGCTT ACATCAGACA CTGGATCAGA CACTAAACGA ACTAAACTGT
ATATAACCAA AACAGAAGAG TCTCGTTCCA TCAGAAACTC CAGAGCTACG TGTTTTTCTC
TTCTCTTGTA AGAAGTTTCT TTTGTTATTG CCTCTTTGCT TTGCTGGAAA TGTCAAGCAA
ATTATGAATA CGTGACCAAA TATTTTGTAT CAGAAAAGCT TTGAGCACCA GTTAAATCTA
TTCCTTCCTT TTTTTCAAGT GGCACCAGCT TTTTCAGCTC TATTTTTATC CTTAAATTGC
ATTTATTCCT AAAGTAGGCA GGGTATTTCA TATTGAGCAT ACTCTCTTAA GACTGAGGGC
ATTTGGTTCC TGGGAGAATA GACAACCCCA CACTTTAAAA ATACAGACTC CAATGTCTAG
TCATGGGTCA ATTTAAAAAG TTGAAGAATA TCCACTGCTG GTCACACTAT AGGAGGCCAG
GGACCATCAC ATTAAAATGA GTGGGGATTT TCCAGCCAGA GTAAAAAAAA AAAAAAAAA
Deduced amino acid sequence: (length: 248) [FASTA format sequence]
MAGLNSLEAV KRKIQALQQQ ADEAEDRAQG LQRELDGERE RREKAEGDVA ALNRRIQLVE
EELDRAQERL ATALQKLEEA EKAADESERG MKVIENRAMK DEEKMEIQEM QLKEAKHIAE
EADRKYEEVA RKLVILEGEL ERAEERAEVS ELKCGDLEEE LKNVTNNLKS LEAASEKYSE
KEDKYEEEIK LLSDKLKEAE TRAEFAERTV AKLEKTIDDL EEKLAQAKEE NVGLHQTLDQ
TLNELNCI
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TPM4 | tropomyosin alpha-4 chain isoform 2 [Homo sapiens]. | 281 | 1e-75 | |
|
| TPM3 | tropomyosin alpha-3 chain isoform 4 [Homo sapiens]. | 213 | 2e-55 | |
|
| TPM2 | tropomyosin beta chain isoform 2 [Homo sapiens]. | 184 | 2e-46 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tpm4 | tropomyosin alpha-4 chain [Mus musculus]. | 271 | 8e-73 | |
|
| Tpm1 | tropomyosin alpha-1 chain isoform 6 [Mus musculus]. | 223 | 2e-58 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC609879 | PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis familiaris]. | 235 | 6e-62 | |
|
| TPM1 | PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 19 [Canis familiaris]. | 224 | 2e-58 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Bos taurus]. | 235 | 6e-62 | |
|
| TPM3 | PREDICTED: tropomyosin 4-like [Bos taurus]. | 193 | 3e-49 | |
|
| TPM3 | tropomyosin alpha-3 chain [Bos taurus]. | 176 | 3e-44 | |
|
| LOC784223 | PREDICTED: tropomyosin 4 [Bos taurus]. | 164 | 2e-40 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Sus scrofa]. | 281 | 7e-76 | |
|
| TPM3 | tropomyosin alpha-3 chain [Sus scrofa]. | 197 | 1e-50 | |
|
| TPM2 | tropomyosin beta chain [Sus scrofa]. | 177 | 1e-44 | |
|
| LOC100620599 | PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa]. | 175 | 4e-44 | |
|
| TPM1 | tropomyosin alpha-1 chain [Sus scrofa]. | 172 | 5e-43 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07957 | 4.1 | AAGAATATCCACTGCTGGTCACACTATAGGAGGCCAGGGACCATCACATTAAAATGAGTG |
Assembly member: TOP