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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
PST01_0098_D08
Library: PST01 (Prostate)
Individual: LWD10, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,395)
[FASTA format sequence]
TCTCGACCCC GACGCCGCTG CCGCCGCAGG CCCCTCCACG CCCACACCCC CTACCCACTG
CCCAGCCATG GAGGCCATCA AGAAGAAGAT GCAGATGCTG AAGCTGGACA AGGAGAACGC
CATCGACCGG GCCGAGCAGG CGGAGTCGGA TAAGAAAGCT GCTGAGGAGA AGTGCAAGCA
GGTGGAGGAG GAGCTGACGC ACCTCCAGAA GAAGCTGAAG GGGACAGAGG ATGAGCTGGA
CAAATACTCC GAGAACCTGA AGGACGCGCA GGAAAAGCTG GAGCTGAGCG AGAAGAAAGC
CTCCGACGCC GAAGGGGATG TAGCAGCTCT CAATCGGCGC ATCCAACTCG TTGAGGAGGA
GTTGGACAGG GCTCAGGAAC GACTGGCCAC AGCCCTGCAG AAGCTTGAGG AGGCAGAAAA
GGCTGCAGAT GAGAGCGAGA GAGGAATGAA GGTGATAGAA AACCGGGCCA TGAAAGATGA
GGAGAAGATG GAGATTCAGG AGATGCAGCT CAAAGAGGCC AAGCACATTG CCGAGGAGGC
CGACCGCAAA TACGAGGAGG TAGCTCGTAA GTTGGTCATC CTGGAGGGCG AGCTGGAGAG
GGCAGAGGAG CGTGCCGAGG TGTCTGAACT AAAATGTGGT GACCTGGAAG AAGAACTCAA
GAATGTCACC AACAACCTGA AGTCGCTAGA GGCTGCATCT GAAAAGTATT CTGAAAAGGA
GGATAAATAT GAAGAAGAGA TTAAACTTCT GTCTGACAAA CTGAAAGAGG CTGAGACCCG
TGCTGAATTT GCAGAGAGAA CAGTTGCAAA ACTGGAAAAG ACCATCGATG ACCTGGAAGA
AAAACTTGCC CAGGCCAAAG AAGAGAACGT GGGCTTACAT CAGACACTGG ATCAGACACT
AAACGAACTA AACTGTATAT AACCAAAACA GAAGAGTCTC GTTCCATCAG AAACTCCAGA
GCTACGTGTT TTTCTCTTCT CTTGTAAGAA GTTTCTTTTG TTATTGCCTC TTTGCTTTGC
TGGAAATGTC AAGCAAATTA TGAATACGTA ACCAAATATT TTGTATCAGA AAAGCTTTGA
GCACCAGTTA AATCTATTCC TTCCTTTTTT TCAAGTGGCA CCAGCTTTTT CAGCTCTATT
TTTATCCTTA AATTGGGTTT ATTCCTAAAG TAGGCAGGGT ATTTCATATT GAGCATACTC
TCTTAAGACT GAGGGCATTT GGTTCCTGGG AGAATAGACA ACCCCACACT TTAAAAATAC
AGACTCCAAT GTCTAGTCAT GGGTCAATTT AAAAAGTTGA AGAATATCCA CTGCTGGTCA
CACTATAGGA GGCCAGGGAC CATCACATTA AAATGAGTGG GGATTTTCCA GCCAGAGTAA
AAAAAAAAAA AAAAA
Deduced amino acid sequence: (length: 284) [FASTA format sequence]
MEAIKKKMQM LKLDKENAID RAEQAESDKK AAEEKCKQVE EELTHLQKKL KGTEDELDKY
SENLKDAQEK LELSEKKASD AEGDVAALNR RIQLVEEELD RAQERLATAL QKLEEAEKAA
DESERGMKVI ENRAMKDEEK MEIQEMQLKE AKHIAEEADR KYEEVARKLV ILEGELERAE
ERAEVSELKC GDLEEELKNV TNNLKSLEAA SEKYSEKEDK YEEEIKLLSD KLKEAETRAE
FAERTVAKLE KTIDDLEEKL AQAKEENVGL HQTLDQTLNE LNCI
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | TPM4 | tropomyosin alpha-4 chain isoform 1 [Homo sapiens]. | 379 | e-105 | |
|
| TPM1 | tropomyosin alpha-1 chain isoform 3 [Homo sapiens]. | 322 | 5e-88 | |
|
| TPM2 | tropomyosin beta chain isoform 2 [Homo sapiens]. | 304 | 1e-82 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Tpm1 | tropomyosin alpha-1 chain isoform 3 [Mus musculus]. | 322 | 4e-88 | |
|
| Tpm2 | tropomyosin beta chain [Mus musculus]. | 298 | 5e-81 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC609879 | PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis familiaris]. | 383 | e-106 | |
|
| LOC481598 | PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 15 [Canis familiaris]. | 325 | 8e-89 | |
|
| TPM1 | PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin) isoform 6 [Canis familiaris]. | 300 | 3e-81 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM4 | tropomyosin alpha-4 chain [Bos taurus]. | 380 | e-105 | |
|
| TPM3 | tropomyosin alpha-3 chain [Bos taurus]. | 299 | 5e-81 | |
|
| TPM1 | tropomyosin alpha-1 chain [Bos taurus]. | 296 | 2e-80 | |
|
| TPM2 | tropomyosin beta chain [Bos taurus]. | 280 | 3e-75 | |
|
| LOC784223 | PREDICTED: tropomyosin 4 [Bos taurus]. | 155 | 6e-38 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| TPM2 | tropomyosin beta chain [Sus scrofa]. | 299 | 2e-81 | |
|
| LOC100620599 | PREDICTED: tropomyosin alpha-3 chain-like isoform 1 [Sus scrofa]. | 298 | 6e-81 | |
|
| TPM1 | tropomyosin alpha-1 chain [Sus scrofa]. | 292 | 3e-79 | |
|
| TPM4 | tropomyosin alpha-4 chain [Sus scrofa]. | 243 | 1e-64 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-07957 | 4.1 | AAGAATATCCACTGCTGGTCACACTATAGGAGGCCAGGGACCATCACATTAAAATGAGTG |
Assembly member: TOP