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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
PTG01_0051_E06
Library: PTG01 (Pituitary gland)
Individual: LWD4, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,647)
[FASTA format sequence]
GATTTGACTT GGGCCAAGAT GTTATTGATT TTACTGGGCA TGCCCTAGCC CTTTACAGAA
CTGATGACTA TTTAGATCAA CCATGTTGTG AAACCATTAA TAGGATTAAG CTTTACAGTG
AGTCTTTGGC AAGATATGGC AAAAGCCCAT ACCTTTATCC GCTCTACGGC CTTGGAGAAC
TGCCTCAAGG ATTTGCAAGG CTAAGTGCTA TTTATGGAGG TACCTACATG CTGAATAAAC
CCATCGAAGA AATCATTGTG CAGAATGGAA AAGTGATTGG TGTAAAATCT GAAGGAGAGA
TCGCGCGCTG CAAGCAGCTC ATCTGCGACC CCAGCTACGT GAAAGACCGC GTGGAGAAGG
TGGGCCAGGT GATCCGTGTC ATCTGCATCC TGAGCCACCC CATCAAGAAC ACCAGTGACG
CCAACTCCTG CCAGATCATC ATTCCCCAGA ACCAAGTCAA CCGCAAGTCC GACATCTACG
TCTGCATGAT CTCCTCGGCG CACAACGTGG CTGCGCAGGG CAAGTACATC GCCATCGCCA
GCACCACCGT GGAGACCAAG GAACCCGAGA AGGAGATCAG ACCAGCCCTG GAGCTCCTGG
AGCCGATTGA GCAGAAATTC GTCAGCATCA GCGACCTCCT TGTCCCGAAA GATCTGGGAA
CAGACAGCCA GATCTTCATC TCCCGCACGT ACGACGCCAC CACTCACTTC GAGACCACCT
GTGACGACAT CAAGGACATC TATAAGAGGA TGACGGGGTC CGAGTTCGAC TTCGAGGAAA
TGAAGCGCAA GAAAAACGAC ATCTACGGGG AGGACTAAGG GCCGTGCCCG GCGCTCAGTT
AGGACGCCTT CCGGCCTGGC GGGGACGCGC AGCGGAGGAC GTCACTCTCG CGAGGCTGCG
CTCGTAACCA GGCCGGGCGG CGGCAGGGCC CTGTGCCCGT CAAGACCCTC CCCTCCTAAT
ATCATGTATT AACTTGTTCC ACCGCGTGGC TCTTCAGAAT TGGCGGGTTC CCACATCCCA
TCCATGTAAC CAATACTGGC TTGTTTTTTC TAGTGAAGGA TCAGTTTTAA CACATTGTGA
TACCGACACA GAACTCGATA CAGCACTCGT ATCTTTTAAT CAGCCTGGCC TTTGCCCTTC
CGAGCTGCTG CTGCTGCTCG CGAGCTGGGC GCTGGGGCTG TGTGCAGTTT GCGACAGTTG
GCGTGCGCCT GTCCTCTAGA CGTTCAGGAG ACTCGGAATC CGACATTCCC TCAGCCGGGA
CAGCATCCCC GACCCCTGCT CACCCTGTAC CTTTACGGCA GGCGTGACGA CCCTGCCCGG
GCAGCACAGC TACGCGTTTG GTTCACGTGG GCCTCCACTT CTAACCCAGC TCCAGACTTG
GAGAGTCGTT TTGGCGGAAG CCGAGTGCGG TGTTTTAACC TAATGAAATG GATGCGAGCA
GAGGGAGGAA ACCTCTCCTG AAGCAGGTAA ATACAGAAGC TGCGTTTGTG CCCCAGGTGT
GGCTTCCTCC GCGGACCAAG CCGCAGGGTG GCGTGGAGGT GACAGAGCCC TGCGTCCGTG
GTGTCGGTCT CAGAAAGGCT CCCGATGATT TCTGTCCTGC AAAATAAAGC CAAACTCTGG
AAACCAGCAA AAAAAAAAAA AAAAAAA
Deduced amino acid sequence: (length: 196) [FASTA format sequence]
MLNKPIEEII VQNGKVIGVK SEGEIARCKQ LICDPSYVKD RVEKVGQVIR VICILSHPIK
NTSDANSCQI IIPQNQVNRK SDIYVCMISS AHNVAAQGKY IAIASTTVET KEPEKEIRPA
LELLEPIEQK FVSISDLLVP KDLGTDSQIF ISRTYDATTH FETTCDDIKD IYKRMTGSEF
DFEEMKRKKN DIYGED
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | GDI2 | rab GDP dissociation inhibitor beta isoform 2 [Homo sapiens]. | 486 | e-137 | |
|
| GDI1 | rab GDP dissociation inhibitor alpha [Homo sapiens]. | 434 | e-121 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Gdi2 | rab GDP dissociation inhibitor beta [Mus musculus]. | 488 | e-138 | |
|
| Gdi1 | rab GDP dissociation inhibitor alpha [Mus musculus]. | 438 | e-123 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| GDI2 | rab GDP dissociation inhibitor beta [Canis lupus familiaris]. | 490 | e-138 | |
|
| GDI1 | rab GDP dissociation inhibitor alpha [Canis lupus familiaris]. | 437 | e-122 | |
|
| LOC608718 | PREDICTED: similar to Rab GDP dissociation inhibitor beta (Rab GDI beta) (GDI-2) [Canis familiaris]. | 350 | 2e-96 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| GDI2 | rab GDP dissociation inhibitor beta [Bos taurus]. | 491 | e-138 | |
|
| GDI1 | rab GDP dissociation inhibitor alpha [Bos taurus]. | 437 | e-122 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| GDI2 | rab GDP dissociation inhibitor beta [Sus scrofa]. | 494 | e-140 | |
|
| LOC100623607 | PREDICTED: rab GDP dissociation inhibitor alpha-like isoform 2 [Sus scrofa]. | 438 | e-123 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-21223 | 4.1 | TCTCAGAAAGGCTCCCGATGATTTCTGTCCTGCAAAATAAAGCCAAACTCTGGAAACCAG |
Assembly member: TOP