[Help]

[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  SPL01_0017_D10

Library: SPL01 (Spleen)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)

Nucleotide sequence:   (length: 1,151)  [FASTA format sequence]
ACAGTATCCA TTTGAGTGGG ACTTGCCTGC TCCCTTCACA CACTGTCCTC TCCTGTTCTC
CAGC
ATGTTG CATCTGTGTT TCTCCAGAGG CTTTTGGATG GCGGCTCTGA CCGTGATGCT
GGTGGTGCTG AGCCCTCCCT TGGCTTTGGC CAGGGACACC CCACCGCATT TCTTCTTTAT
GGAGAAATTC GAGTGTCATT TCTTCAACGG GACCGAGCGG GTGAGGTTAT TGGACAGGCA
TTACTATAAC GGAGAGGAGA TCTTGCGCTT CGATAGCGAC GTGGGCGAGT ACCGGGCGGT
GACTGAGCTG GGGCGGCCAG AAGCCAAGGA CTGGAACAGC CGGAAGGACA TCCTGGAGCA
GAGGCGGGCG GAGGTGGACA CGTACTGCAG ACACAACTAC AGGATCTCGG ATACATTCCT
GGTGCCGCGG CGAGCTGAGC CCACGGTGAC AGTGTATCCT GCAAAGACCC AGCCCCTGCA
GCACCACAAC CTCCTGGTCT GCTCTGTGAC CGGGTTCTAC CCAGGCCACG TGGAGACCAT
GGTGATGCTT GAAACGGTTC CTCAGAGTGG AGAGGTCTAC AGCTGCCGAG TGGAGCACCC
CAGCCTGACG AGCCCCGTCA CAGTGGAATG GAGGGCACGG TCTGAATCTG CTCAGGGCAA
GATGATGAGT GGGGTCGGGG GCTTCGTCCT GGGTCTGCTC TTTGTTGCTG TGGGGCTGTT
CATCTACTTC AAGAATCAGA AAGGACGCCC TGCCCTTCAG CCAACAGGCC TCCTGAGCTG
AAGTGCAGGT GGTGACACTC CAAGCAAGCA TCCTCTGTGC CAGCGTCTTC ACAGCATGAG
AAGGCTCCTG CTATGCTCTA CGTCCTCCCC CAGGAGAGCT CTTCCTCAGA CTCTCCTTTG
CTCCTGGTTC AGGGACCCTG CAGAAAAGGT CTTTTGATGG CTTTCTCAGC CTCCCCCCTT
TGACTTGGAA GTTCCTGGCA TTGATTGCTG TGCCTATGTT CATTTTTCTT TCTTTTTTTT
TTCCTGGTTG GTCCCTGTTG TTTTCGACGT TACTGCCTCC TGTGCATCTG AACTCATCCA
CTGCCCATAT TACCTTATTA TGTTTTTCTC CAATAAATAT GGAGTGACAA TAAAAAAAAA
AAAAAAAAAA A

Deduced amino acid sequence:  (length: 238) [FASTA format sequence]
MLHLCFSRGF WMAALTVMLV VLSPPLALAR DTPPHFFFME KFECHFFNGT ERVRLLDRHY
YNGEEILRFD SDVGEYRAVT ELGRPEAKDW NSRKDILEQR RAEVDTYCRH NYRISDTFLV
PRRAEPTVTV YPAKTQPLQH HNLLVCSVTG FYPGHVETMV MLETVPQSGE VYSCRVEHPS
LTSPVTVEWR ARSESAQGKM MSGVGGFVLG LLFVAVGLFI YFKNQKGRPA LQPTGLLS


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DRB1major histocompatibility complex, class II, DR beta 1 precursor [Homo sapiens]. 2918e-79O
Contig/Assembly ProteinLOC100507714PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 2 [Homo sapiens]. 2871e-77
Contig/Assembly ProteinLOC100507709PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 2 [Homo sapiens]. 2871e-77


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Eb1H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. 2892e-78O
Contig/Assembly ProteinH2-Eb2histocompatibility 2, class II antigen E beta2 [Mus musculus]. 2102e-54O
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]. 1962e-50O
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus [Mus musculus]. 1788e-45O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DRB1DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris]. 2985e-81O
Contig/Assembly ProteinHLA-DQB1major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. 2433e-64O
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta [Canis lupus familiaris]. 1893e-48O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinBoLA-DRB3major histocompatibility complex, class II, DRB3 [Bos taurus]. 3123e-85O
Contig/Assembly ProteinLOC786695PREDICTED: major histocompatibility complex, class II, DR beta 3-like [Bos taurus]. 2924e-79
Contig/Assembly ProteinBOLA-DRB2PREDICTED: histocompatibility complex, class II, DR beta 2 [Bos taurus]. 2563e-68
Contig/Assembly ProteinBOLA-DOBmajor histocompatibility complex, class II, DO beta [Bos taurus]. 1756e-44


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLA-DRB1MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa]. 379e-105
Contig/Assembly ProteinLOC100519552PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 2708e-73
Contig/Assembly ProteinLOC100513292PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 2622e-70
Contig/Assembly ProteinSLA-DQB1SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa]. 2293e-60
Contig/Assembly ProteinLOC100520439PREDICTED: HLA class II histocompatibility antigen, DO beta chain-like [Sus scrofa]. 1854e-47


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-051924.1TGAACTCATCCACTGCCCATATTACCTTATTATGTTTTTCTCCAATAAATATGGAGTGAC


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003053120030531S-0265111fwd
2003082620030826S-0320751fwd
2004020420040204S-0320301fwd
2005032220050322C-0047882fwd
2006061120060611C-0053932fwd
2007080620070806C-0067242fwd
2008051520080515C-0005242fwd
2010100120101001S-1124481fwd
2011060120110601S-1176671fwd