[Help]
[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
SPL01_0017_D10
Library: SPL01 (Spleen)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,151)
[FASTA format sequence]
ACAGTATCCA TTTGAGTGGG ACTTGCCTGC TCCCTTCACA CACTGTCCTC TCCTGTTCTC
CAGCATGTTG CATCTGTGTT TCTCCAGAGG CTTTTGGATG GCGGCTCTGA CCGTGATGCT
GGTGGTGCTG AGCCCTCCCT TGGCTTTGGC CAGGGACACC CCACCGCATT TCTTCTTTAT
GGAGAAATTC GAGTGTCATT TCTTCAACGG GACCGAGCGG GTGAGGTTAT TGGACAGGCA
TTACTATAAC GGAGAGGAGA TCTTGCGCTT CGATAGCGAC GTGGGCGAGT ACCGGGCGGT
GACTGAGCTG GGGCGGCCAG AAGCCAAGGA CTGGAACAGC CGGAAGGACA TCCTGGAGCA
GAGGCGGGCG GAGGTGGACA CGTACTGCAG ACACAACTAC AGGATCTCGG ATACATTCCT
GGTGCCGCGG CGAGCTGAGC CCACGGTGAC AGTGTATCCT GCAAAGACCC AGCCCCTGCA
GCACCACAAC CTCCTGGTCT GCTCTGTGAC CGGGTTCTAC CCAGGCCACG TGGAGACCAT
GGTGATGCTT GAAACGGTTC CTCAGAGTGG AGAGGTCTAC AGCTGCCGAG TGGAGCACCC
CAGCCTGACG AGCCCCGTCA CAGTGGAATG GAGGGCACGG TCTGAATCTG CTCAGGGCAA
GATGATGAGT GGGGTCGGGG GCTTCGTCCT GGGTCTGCTC TTTGTTGCTG TGGGGCTGTT
CATCTACTTC AAGAATCAGA AAGGACGCCC TGCCCTTCAG CCAACAGGCC TCCTGAGCTG
AAGTGCAGGT GGTGACACTC CAAGCAAGCA TCCTCTGTGC CAGCGTCTTC ACAGCATGAG
AAGGCTCCTG CTATGCTCTA CGTCCTCCCC CAGGAGAGCT CTTCCTCAGA CTCTCCTTTG
CTCCTGGTTC AGGGACCCTG CAGAAAAGGT CTTTTGATGG CTTTCTCAGC CTCCCCCCTT
TGACTTGGAA GTTCCTGGCA TTGATTGCTG TGCCTATGTT CATTTTTCTT TCTTTTTTTT
TTCCTGGTTG GTCCCTGTTG TTTTCGACGT TACTGCCTCC TGTGCATCTG AACTCATCCA
CTGCCCATAT TACCTTATTA TGTTTTTCTC CAATAAATAT GGAGTGACAA TAAAAAAAAA
AAAAAAAAAA A
Deduced amino acid sequence: (length: 238) [FASTA format sequence]
MLHLCFSRGF WMAALTVMLV VLSPPLALAR DTPPHFFFME KFECHFFNGT ERVRLLDRHY
YNGEEILRFD SDVGEYRAVT ELGRPEAKDW NSRKDILEQR RAEVDTYCRH NYRISDTFLV
PRRAEPTVTV YPAKTQPLQH HNLLVCSVTG FYPGHVETMV MLETVPQSGE VYSCRVEHPS
LTSPVTVEWR ARSESAQGKM MSGVGGFVLG LLFVAVGLFI YFKNQKGRPA LQPTGLLS
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
BLAST on RefSeq (Human): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| HLA-DRB1 | major histocompatibility complex, class II, DR beta 1 precursor [Homo sapiens]. | 291 | 8e-79 | O |
|
| LOC100507714 | PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 2 [Homo sapiens]. | 287 | 1e-77 | |
|
| LOC100507709 | PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 2 [Homo sapiens]. | 287 | 1e-77 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| H2-Eb1 | H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. | 289 | 2e-78 | O |
|
| H2-Eb2 | histocompatibility 2, class II antigen E beta2 [Mus musculus]. | 210 | 2e-54 | O |
|
| H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]. | 196 | 2e-50 | O |
|
| H2-Ob | histocompatibility 2, O region beta locus [Mus musculus]. | 178 | 8e-45 | O |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| HLA-DRB1 | DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris]. | 298 | 5e-81 | O |
|
| HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. | 243 | 3e-64 | O |
|
| HLA-DOB | major histocompatibility complex, class II, DO beta [Canis lupus familiaris]. | 189 | 3e-48 | O |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| BoLA-DRB3 | major histocompatibility complex, class II, DRB3 [Bos taurus]. | 312 | 3e-85 | O |
|
| LOC786695 | PREDICTED: major histocompatibility complex, class II, DR beta 3-like [Bos taurus]. | 292 | 4e-79 | |
|
| BOLA-DRB2 | PREDICTED: histocompatibility complex, class II, DR beta 2 [Bos taurus]. | 256 | 3e-68 | |
|
| BOLA-DOB | major histocompatibility complex, class II, DO beta [Bos taurus]. | 175 | 6e-44 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| SLA-DRB1 | MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa]. | 379 | e-105 | |
|
| LOC100519552 | PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. | 270 | 8e-73 | |
|
| LOC100513292 | PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. | 262 | 2e-70 | |
|
| SLA-DQB1 | SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa]. | 229 | 3e-60 | |
|
| LOC100520439 | PREDICTED: HLA class II histocompatibility antigen, DO beta chain-like [Sus scrofa]. | 185 | 4e-47 | |
Oligo-microarray probe: TOP
Probe ID | Rel. | Probe sequence |
---|
AGPOA4-05192 | 4.1 | TGAACTCATCCACTGCCCATATTACCTTATTATGTTTTTCTCCAATAAATATGGAGTGAC |
Assembly member: TOP