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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
TES01_0034_F05
Library: TES01 (Testis) Individual: LWD6 , Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence :
(length: 1,159)
[FASTA format sequence] TCATTGCTCT ACAACTCCGA AGAGCAAGAG CTGAGACCAC CTTGAGAAGA GC ATGGTCCC AGGCCGAGTT CTGATGTGGG GGGCCCTCGC CCTGACCACC GTGATGAGCG CCTGTGGAGC CGACCATGTT GCCTCCTATG GCTTAAATGT CTACCAGTCT TACGGTCCCA GCGGCTATTT TACCCATGAA TTTGATGGCG ACGAGGAATT CTGCGTGGAC CTGGAGAAGA AGGAGACTGT CTGGCGGCTG CCTCTGTTTA GTGAATTTAC AAGTTTTGAC CCGCAGGGTG CACTGAGGAA TATAGCTACG TTAAAACATA ACTTGAACAT CGTGACTAAA CGCTCCAACA ACACCGCGGC TGTCAATCAG GTTCCTGAGG TGACTGTGTT TTCCAAGTCT CCAGTGATAC TGGGTCAGCC CAACACCCTC ATCTGTCATG TGGACAGCAT CTTTCCTCCT GTGATCAACA TCACGTGGTT GAAGAACGGG CACTCTGTCA AAGGTTTTTC TGAGACCAGC TTCCTCTCCA AAAATGATCA TTCCTTCCTC AAGATCAGTT ATCTCACCTT CCTCCCTTCT GATGATGATT TTTATGACTG CAAAGTGGAG CACTGGGGCC TGGATAAGCC ACTTCTGAAA CACTGGGAAC CTGAGATTCC AGCCCCCATG TCAGAGCTGA CAGAGACTGT GGTCTGCGCC CTGGGATTGA TCGTGGGCCT TGTGGGCATC GTGGTGGGCA CTGTCTTCAT CATTCAAGGC CTGCGCTCAG GTGGTCCCTC TAGACACCAA GGGTCCTTGT GAGTCACACT CCAGAAGGGA AGGAGCACTG CCCGCCTACA AGAGCTGAAG AGTGGATGTG CTCAACGACC TAGAACTATT TTCTGGCCAA ATTCATCATA TACCTTCTCT CTTCCTACAT TCTTCTTCTC ACCTCTTCTC TGGAACTTAA GGTGCTGTGT CATCTCAGAA TTCATATGCC CTTGGAATCC TCTTCCTGAC CTTCTAGGTC TTTTTCTTTT CTCAGTTGTT ACCTGTTATG GGATCTCTGA GATATCCCAC TCGGCTACCT GATCCCTCAG TGACCCTAAA CTAATATGTA CATGGAAACA ATAAATCACT TCATGAGGTT TTTGTACTGA AAAAAAAAAA AAAAAAAAA
Deduced amino acid sequence : (length: 249) [FASTA format sequence] MVPGRVLMWG ALALTTVMSA CGADHVASYG LNVYQSYGPS GYFTHEFDGD EEFCVDLEKK ETVWRLPLFS EFTSFDPQGA LRNIATLKHN LNIVTKRSNN TAAVNQVPEV TVFSKSPVIL GQPNTLICHV DSIFPPVINI TWLKNGHSVK GFSETSFLSK NDHSFLKISY LTFLPSDDDF YDCKVEHWGL DKPLLKHWEP EIPAPMSELT ETVVCALGLI VGLVGIVVGT VFIIQGLRSG GPSRHQGSL
SNP mapping information
BLAST on RefSeq (Human) : TOP
Locus Definition Score E value FL
LOC100507718 PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 3 [Homo sapiens]. 374 e-103
LOC100509457 PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 2 [Homo sapiens]. 367 e-102
BLAST on RefSeq (Mouse) : TOP
Locus Definition Score E value FL
H2-Aa histocompatibility 2, class II antigen A, alpha precursor [Mus musculus]. 320 2e-87 O
H2-Oa histocompatibility 2, O region alpha locus [Mus musculus]. 225 4e-59
H2-Ea-ps histocompatibility 2, class II antigen E alpha precursor [Mus musculus]. 213 3e-55
H2-DMa class II histocompatibility antigen, M alpha chain precursor [Mus musculus]. 82 8e-16
H2-Eb1 H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. 58.2 1e-08
BLAST on RefSeq (Dog) : TOP
Locus Definition Score E value FL
HLA-DQA1 major histocompatibility complex, class II, DQ alpha [Canis lupus familiaris]. 363 e-100 O
LOC474869 PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 11 [Canis familiaris]. 225 7e-59
DLA-DRA MHC class II DR alpha chain [Canis lupus familiaris]. 222 5e-58
LOC607827 PREDICTED: similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) [Canis familiaris]. 58.5 1e-08
BLAST on RefSeq (Cattle) : TOP
Locus Definition Score E value FL
HLA-DQA1 major histocompatibility complex, class II, DQ alpha 5 [Bos taurus]. 352 3e-97
LOC100336394 PREDICTED: BOLA-DQA2 protein-like [Bos taurus]. 344 7e-95
BOLA-DQA1 major histocompatibility complex, class II, DQ alpha, type 1 [Bos taurus]. 342 3e-94
BOLA-DQA3 major histocompatibility complex, class II, DQ alpha, type 3 [Bos taurus]. 330 1e-90
BOLA-DRA major histocompatibility complex, class II, DR alpha [Bos taurus]. 214 1e-55
BLAST on RefSeq (Pig) : TOP
Locus Definition Score E value FL
SLA-DQA SLA class II histocompatibility antigen, DQ haplotype C alpha chain precursor [Sus scrofa]. 453 e-128
SLA-DQA1 SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor [Sus scrofa]. 434 e-122
SLA src-like-adapter [Sus scrofa]. 251 5e-67
SLA-DRA MHC class II DR-alpha [Sus scrofa]. 222 3e-58
LOC100513292 PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 56.2 3e-08
Oligo-microarray probe : TOP
Probe ID Rel. Probe sequence AGPOA4-07364 4.1 ATCCCTCAGTGACCCTAAACTAATATGTACATGGAAACAATAAATCACTTCATGAGGTTT
Assembly member : TOP