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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  TES01_0034_F05

Library: TES01 (Testis)
Individual: LWD6, Crossbred pig ((Landrace x Large White) x Duroc, Western)

Nucleotide sequence:   (length: 1,159)  [FASTA format sequence]
TCATTGCTCT ACAACTCCGA AGAGCAAGAG CTGAGACCAC CTTGAGAAGA GCATGGTCCC
AGGCCGAGTT CTGATGTGGG GGGCCCTCGC CCTGACCACC GTGATGAGCG CCTGTGGAGC
CGACCATGTT GCCTCCTATG GCTTAAATGT CTACCAGTCT TACGGTCCCA GCGGCTATTT
TACCCATGAA TTTGATGGCG ACGAGGAATT CTGCGTGGAC CTGGAGAAGA AGGAGACTGT
CTGGCGGCTG CCTCTGTTTA GTGAATTTAC AAGTTTTGAC CCGCAGGGTG CACTGAGGAA
TATAGCTACG TTAAAACATA ACTTGAACAT CGTGACTAAA CGCTCCAACA ACACCGCGGC
TGTCAATCAG GTTCCTGAGG TGACTGTGTT TTCCAAGTCT CCAGTGATAC TGGGTCAGCC
CAACACCCTC ATCTGTCATG TGGACAGCAT CTTTCCTCCT GTGATCAACA TCACGTGGTT
GAAGAACGGG CACTCTGTCA AAGGTTTTTC TGAGACCAGC TTCCTCTCCA AAAATGATCA
TTCCTTCCTC AAGATCAGTT ATCTCACCTT CCTCCCTTCT GATGATGATT TTTATGACTG
CAAAGTGGAG CACTGGGGCC TGGATAAGCC ACTTCTGAAA CACTGGGAAC CTGAGATTCC
AGCCCCCATG TCAGAGCTGA CAGAGACTGT GGTCTGCGCC CTGGGATTGA TCGTGGGCCT
TGTGGGCATC GTGGTGGGCA CTGTCTTCAT CATTCAAGGC CTGCGCTCAG GTGGTCCCTC
TAGACACCAA GGGTCCTTGT GAGTCACACT CCAGAAGGGA AGGAGCACTG CCCGCCTACA
AGAGCTGAAG AGTGGATGTG CTCAACGACC TAGAACTATT TTCTGGCCAA ATTCATCATA
TACCTTCTCT CTTCCTACAT TCTTCTTCTC ACCTCTTCTC TGGAACTTAA GGTGCTGTGT
CATCTCAGAA TTCATATGCC CTTGGAATCC TCTTCCTGAC CTTCTAGGTC TTTTTCTTTT
CTCAGTTGTT ACCTGTTATG GGATCTCTGA GATATCCCAC TCGGCTACCT GATCCCTCAG
TGACCCTAAA CTAATATGTA CATGGAAACA ATAAATCACT TCATGAGGTT TTTGTACTGA
AAAAAAAAAA AAAAAAAAA

Deduced amino acid sequence:  (length: 249) [FASTA format sequence]
MVPGRVLMWG ALALTTVMSA CGADHVASYG LNVYQSYGPS GYFTHEFDGD EEFCVDLEKK
ETVWRLPLFS EFTSFDPQGA LRNIATLKHN LNIVTKRSNN TAAVNQVPEV TVFSKSPVIL
GQPNTLICHV DSIFPPVINI TWLKNGHSVK GFSETSFLSK NDHSFLKISY LTFLPSDDDF
YDCKVEHWGL DKPLLKHWEP EIPAPMSELT ETVVCALGLI VGLVGIVVGT VFIIQGLRSG
GPSRHQGSL


SNP mapping information
SNP IDRel.Chr.Location (cM)
SNPF014380.9b7(54.2)
SNPF014380.91b7(54.2)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100507718PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 3 [Homo sapiens]. 374e-103
Contig/Assembly ProteinLOC100509457PREDICTED: HLA class II histocompatibility antigen, DQ alpha 1 chain-like isoform 2 [Homo sapiens]. 367e-102


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Aahistocompatibility 2, class II antigen A, alpha precursor [Mus musculus]. 3202e-87O
Contig/Assembly ProteinH2-Oahistocompatibility 2, O region alpha locus [Mus musculus]. 2254e-59
Contig/Assembly ProteinH2-Ea-pshistocompatibility 2, class II antigen E alpha precursor [Mus musculus]. 2133e-55
Contig/Assembly ProteinH2-DMaclass II histocompatibility antigen, M alpha chain precursor [Mus musculus]. 828e-16
Contig/Assembly ProteinH2-Eb1H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. 58.21e-08


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha [Canis lupus familiaris]. 363e-100O
Contig/Assembly ProteinLOC474869PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 11 [Canis familiaris]. 2257e-59
Contig/Assembly ProteinDLA-DRAMHC class II DR alpha chain [Canis lupus familiaris]. 2225e-58
Contig/Assembly ProteinLOC607827PREDICTED: similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) [Canis familiaris]. 58.51e-08


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DQA1major histocompatibility complex, class II, DQ alpha 5 [Bos taurus]. 3523e-97
Contig/Assembly ProteinLOC100336394PREDICTED: BOLA-DQA2 protein-like [Bos taurus]. 3447e-95
Contig/Assembly ProteinBOLA-DQA1major histocompatibility complex, class II, DQ alpha, type 1 [Bos taurus]. 3423e-94
Contig/Assembly ProteinBOLA-DQA3major histocompatibility complex, class II, DQ alpha, type 3 [Bos taurus]. 3301e-90
Contig/Assembly ProteinBOLA-DRAmajor histocompatibility complex, class II, DR alpha [Bos taurus]. 2141e-55


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLA-DQASLA class II histocompatibility antigen, DQ haplotype C alpha chain precursor [Sus scrofa]. 453e-128
Contig/Assembly ProteinSLA-DQA1SLA class II histocompatibility antigen, DQ haplotype D alpha chain precursor [Sus scrofa]. 434e-122
Contig/Assembly ProteinSLAsrc-like-adapter [Sus scrofa]. 2515e-67
Contig/Assembly ProteinSLA-DRAMHC class II DR-alpha [Sus scrofa]. 2223e-58
Contig/Assembly ProteinLOC100513292PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 56.23e-08


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-073644.1ATCCCTCAGTGACCCTAAACTAATATGTACATGGAAACAATAAATCACTTCATGAGGTTT


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2004020420040204C-0002252fwd
2005032220050322C-0002002fwd
2006061120060611C-0001692fwd
2007080620070806C-0000472fwd
2008051520080515C-0004142fwd
2010100120101001C-0012902fwd
2011060120110601C-0016482fwd