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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  THY01_0071_D01

Library: THY01 (Thymus)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)

Nucleotide sequence:   (length: 3,194)  [FASTA format sequence]
GCTACTCTTG GCGATCGAGC GTGGCGCCGG CGGCTCCTCA GCGCTCGGCA GCCATGGACC
TCGCGGCGGC AGCGGAACCG AGCGCCGGCA GCCAGCACTT AGAAGTCCGC GACGAGGTGG
CCGAAAAGTG CCAGAAATTG TTCCTAGATT TCTTGGAGGA ATTCCAGAAC AGCGATGGAG
AAATTAAGTA CTTGCAGTTA GCTGAGGAAC TAATTCGTCC TGAGAGAAAC ACATTGGTTG
TGAGTTTTGT GGACCTGGAG CAATTCAACC AGCAACTTTC TACCACTATT CAAGAGGAGT
TCTATAGGGT TTACCCTTAC CTATGTCGCG CTTTGAAAAC GTTTGTCAAA GACCGTAAAG
AGATTCCCCT GGCCAAGGAT TTTTATGTTG CATTCCAAGA CCTTCCTACC AGACACAAAA
TTCGAGAACT TAACTCATCT AGAATTGGTT TGCTCACTCG CATCAGTGGG CAGGTAGTAC
GGACTCACCC GGTTCACCCA GAGCTTGTGA GCGGAACTTT CCTGTGCTTG GACTGTCAAA
CAGTGATCAG GGACGTAGAA CAGCAGTTCA AGTACACACA GCCAAACATC TGCCGAAATC
CAGTTTGTGC CAATAGAAAG AGATTCCTGC TAGATACAAA TAAATCAAGA TTTGTTGATT
TTCAAAAGGT TCGTATTCAA GAGACTCAAG CTGAGCTTCC CCGAGGGAGT ATCCCCCGCA
GCCTAGAAGT GATCTTGAGG GCTGAAGCTG TGGAGTCAGC TCAAGCTGGT GATAAGTGTG
ACTTCACAGG AACGCTGATT GTTGTGCCTG ACGTGTCTAA GCTTAGCACA CCAGGAGCAC
GTGCAGAAAC TAATTCCCGT GTGAATGGTG TTGATGGATA TGAGACAGAA GGCATTCGAG
GACTCCGGGC CCTTGGTGTT AGGGACCTTT CATATAGGCT GGTCTTTCTT GCGTGCTGTG
TTGCACCGAC CAACCCAAGG TTTGGAGGAA AAGAGCTCCG AGATGAGGAG CAGACGGCTG
AGAGCATTAA GAACCAAATG ACTGTGAAGG AGTGGGAGAA GGTGTTTGAA ATGAGTCAAG
ATAAAAATCT ATACCACAAT CTTTGCACAA GCCTGTTTCC TACTATACAT GGCAATGATG
AAGTAAAACG AGGTGTCTTG CTGATGCTCT TTGGTGGTGT TCCAAAAACA ACAGGGGAAG
GGACCTCTCT TCGAGGGGAC ATAAACGTTT GCATTGTTGG TGACCCCAGT ACAGCTAAGA
GCCAGTTTCT CAAGCATGTG GAGGAATTCA GTCCCAGAGC TGTCTACACC AGTGGCAAAG
CGTCCAGTGC TGCTGGCTTA ACAGCAGCTG TTGTGAGAGA TGAAGAATCT CATGAGTTTG
TCATTGAGGC TGGAGCTTTG ATGCTGGCTG ATAATGGTGT ATGTTGTATT GACGAATTTG
ATAAGATGGA TGTGCGGGAT CAAGTTGCTA TTCATGAAGC TATGGAACAA CAGACCATCT
CCATCACTAA AGCAGGAGTG AAGGCTACTC TGAATGCCAG GACGTCCATT TTGGCAGCAG
CAAACCCGAT CAGTGGACAC TATGACAGAT CAAAGTCATT GAAACAGAAT ATAAATTTGT
CAGCTCCTAT CATGTCCCGA TTTGATCTCT TCTTTATACT TGTGGATGAA TGTAATGAGG
TCACAGATTA TGCCATTGCC AGGCGAATAG TAGACTTGCA TCCAAGAATT GAGGATTCAA
TTGATCGTGT CTATTCCCTT GATGATATCA GGAGGTATCT TCTTTTTGCA AGACAGTTTA
AACCCAAGAT TTCTAAAGAG TCAGAGGACT TCATAGTGGA ACGGTATAAA CGCCTTCGCC
AGAGGGATGG TTCTGGAGTA ACCAAGTCTT CATGGAGGAT TACAGTGCGA CAGCTCGAGA
GCATGATCCG TCTTTCTGAA GCAATGGCTC GGATGCACTG CTGTGATGAG GTCCAGCCTA
AACATGTGAA GGAAGCTTTC AGGTTACTGA ATAAATCAAT CATCCGTGTA GAAACACCTG
ATGTCAATCT GGATCAAGAA GAAGATGCCC AGATGGAGGT AGATGAGAGT CCAGATGGCA
TCAATGGTCA TGCTGATAGC CCTGCTCCTG TAAATGGAAT CAACGGCCAT AGTGAAGACA
TGAATCAAGA TTCAGTTCCG AAAGCCTCCT TAAAGCTGGG CTTCTCTGAA TACTGCCGAA
TCTCTAATCT TATTGTGCTT CACCTCAGAA AGATGGAAGA AGAAGAGGAT GAGTCAGCAT
TAAAGAGGAG TGAGCTTGTT AACTGGTACC TGAAGGAAAT TGAATCAGAA ATTGATTTTG
AAGAAGAACT GATAAATAAA AAGAGAATCA TAGAGAAAGT CATTTATCGA CTCACCCACT
ACGATCATGT TCTAATTGAG CTCACCCAAG CTGGATTGAA AGGCTCCACA GAAGGAAGTG
AGAGCTATGA AGAAGACCCC TACTTGGTCG TTAACCCTAA CTACTTGCTT GAAGATTGAG
CTATTGAAGG TAACCAGAGA AAATGGGGTC CTCTACCTAT AGCCTGGAGT CTGGATGGAG
TTCTGCTGGC CAGAGAAATG CTTCTGGGAG TGATGCTTCA AGAAGATACA CTTTGAGGAA
GAAAAACCAA CTTGATGGTC TTGTGTGTCT CATTTTTGTC ATATACTTTT ATACCAGCAC
AGTTTTTATC CTTTTGTTTA GTGTGCTTCT TGTCTGAATG AAGTTTGATG ACAATTATGT
GTTGTTCTCA TAACTAAGAC CTTTGTTTTC ATGTGTAGGA AAAGGTTCAT TGCTTTTACA
GTGTGTGTTA TCTTATTGGG GAAATAACTT TTTAAAATTG CCAACCCCTG CTTTTTTCCA
CCAAAGTGAC TTTTTTCTGC TGTTGTCTAT TGGATATATT TCTAGTCTAC TAAAATTAAT
GCTTCCATTT ATTCATGAAA ATGAGTCTTT CCCTTTTTGC TTGATATGGG GCAAGAGGGT
AGAAACACAG CATTATAGTA AACATGTAGG AATAGGTTCC TGTGAAGAGA AGTCCTTATT
AAAATTTGTT AATATGAATG TAAAACGTGT TGGAGATGAC TTTTCGAGGT TAATTCCAAT
TCTCTTTGTT TTATTTTGAT TTAAGATAGT TTGTGAAAAT AAAAGGTTTA TTATAAAAAA
AAAAAAAAAA AAAA

Deduced amino acid sequence:  (length: 821) [FASTA format sequence]
MDLAAAAEPS AGSQHLEVRD EVAEKCQKLF LDFLEEFQNS DGEIKYLQLA EELIRPERNT
LVVSFVDLEQ FNQQLSTTIQ EEFYRVYPYL CRALKTFVKD RKEIPLAKDF YVAFQDLPTR
HKIRELNSSR IGLLTRISGQ VVRTHPVHPE LVSGTFLCLD CQTVIRDVEQ QFKYTQPNIC
RNPVCANRKR FLLDTNKSRF VDFQKVRIQE TQAELPRGSI PRSLEVILRA EAVESAQAGD
KCDFTGTLIV VPDVSKLSTP GARAETNSRV NGVDGYETEG IRGLRALGVR DLSYRLVFLA
CCVAPTNPRF GGKELRDEEQ TAESIKNQMT VKEWEKVFEM SQDKNLYHNL CTSLFPTIHG
NDEVKRGVLL MLFGGVPKTT GEGTSLRGDI NVCIVGDPST AKSQFLKHVE EFSPRAVYTS
GKASSAAGLT AAVVRDEESH EFVIEAGALM LADNGVCCID EFDKMDVRDQ VAIHEAMEQQ
TISITKAGVK ATLNARTSIL AAANPISGHY DRSKSLKQNI NLSAPIMSRF DLFFILVDEC
NEVTDYAIAR RIVDLHPRIE DSIDRVYSLD DIRRYLLFAR QFKPKISKES EDFIVERYKR
LRQRDGSGVT KSSWRITVRQ LESMIRLSEA MARMHCCDEV QPKHVKEAFR LLNKSIIRVE
TPDVNLDQEE DAQMEVDESP DGINGHADSP APVNGINGHS EDMNQDSVPK ASLKLGFSEY
CRISNLIVLH LRKMEEEEDE SALKRSELVN WYLKEIESEI DFEEELINKK RIIEKVIYRL
THYDHVLIEL TQAGLKGSTE GSESYEEDPY LVVNPNYLLE D


SNP mapping information
SNP IDRel.Chr.Location (cM)
SNP0015670.9b1517.3
SNP0015670.91b1517.3
SNPF005930.9b15(17.3)
SNPF005930.91b15(17.3)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMCM6DNA replication licensing factor MCM6 [Homo sapiens]. 15560.0O
Contig/Assembly ProteinMCM2DNA replication licensing factor MCM2 [Homo sapiens]. 3235e-88
Contig/Assembly ProteinMCM7DNA replication licensing factor MCM7 isoform 1 [Homo sapiens]. 3174e-86
Contig/Assembly ProteinMCM4DNA replication licensing factor MCM4 [Homo sapiens]. 3052e-82O
Contig/Assembly ProteinMCM8DNA replication licensing factor MCM8 isoform 1 [Homo sapiens]. 2544e-67


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMcm6DNA replication licensing factor MCM6 [Mus musculus]. 15190.0O
Contig/Assembly ProteinMcm2DNA replication licensing factor MCM2 [Mus musculus]. 3282e-89O
Contig/Assembly ProteinMcm7DNA replication licensing factor MCM7 [Mus musculus]. 3082e-83O
Contig/Assembly ProteinMcm4DNA replication licensing factor MCM4 [Mus musculus]. 3012e-81
Contig/Assembly ProteinMcm3DNA replication licensing factor MCM3 [Mus musculus]. 2982e-80


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC476131PREDICTED: similar to DNA replication licensing factor MCM6 (P105MCM) [Canis familiaris]. 15550.0O
Contig/Assembly ProteinLOC484622PREDICTED: similar to minichromosome maintenance protein 2 [Canis familiaris]. 3221e-87
Contig/Assembly ProteinLOC479737PREDICTED: similar to DNA replication licensing factor MCM7 (CDC47 homolog) (P1.1-MCM3) isoform 1 [Canis familiaris]. 3151e-85O
Contig/Assembly ProteinLOC477163PREDICTED: similar to minichromosome maintenance protein 8 isoform 1 isoform 4 [Canis familiaris]. 2521e-66


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMCM6DNA replication licensing factor MCM6 [Bos taurus]. 15710.0O
Contig/Assembly ProteinMCM7DNA replication licensing factor MCM7 [Bos taurus]. 3167e-86
Contig/Assembly ProteinMCM4DNA replication licensing factor MCM4 [Bos taurus]. 3012e-81
Contig/Assembly ProteinMCM3DNA replication licensing factor MCM3 [Bos taurus]. 2982e-80
Contig/Assembly ProteinMCM8PREDICTED: minichromosome maintenance complex component 8 isoform 1 [Bos taurus]. 2522e-66


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinMCM3PREDICTED: DNA replication licensing factor MCM3 [Sus scrofa]. 2942e-79
Contig/Assembly ProteinMCM2PREDICTED: DNA replication licensing factor MCM2 [Sus scrofa]. 2912e-78
Contig/Assembly ProteinMCM8PREDICTED: DNA replication licensing factor MCM8 [Sus scrofa]. 2497e-66
Contig/Assembly ProteinLOC100624302PREDICTED: DNA replication licensing factor MCM7-like [Sus scrofa]. 2273e-59
Contig/Assembly ProteinMCM9PREDICTED: DNA replication licensing factor MCM9 [Sus scrofa]. 1081e-23


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-197204.1GAAACACAGCATTATAGTAAACATGTAGGAATAGGTTCCTGTGAAGAGAAGTCCTTATTA


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003053120030531C-0027172fwd
2003082620030826C-0054942fwd
2004020420040204C-0070372fwd
2005032220050322C-0078832fwd
2006061120060611C-0093342fwd
2007080620070806C-0059762fwd
2008051520080515C-0090372fwd
2010100120101001C-0097703fwd
2011060120110601C-0151864fwd