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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
THY01_0102_D11
Library: THY01 (Thymus)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,279)
[FASTA format sequence]
TTGCCGCGCG CCGAGGTCGC GCGGAGCCGG TCCTCGGAAG AGCTGAGGGG CTGTGCAGCC
GGGCAGTGAG AGCTGTCTGG CCTTAAGCCC TTCATCCTTG GGGAAGGAAA TGACTAACCA
GTACAGTATT CTCTTCAAAC AAGAGCAAGC CCATGATGAT GCCATTTGGT CAGTTGCCTG
GGGGACAAAC AAGAAAGAAA ACTCAGAGAC AGTGGTCACA GGATCCCTGG ATGACCTGGT
GAAGGTCTGG AAATGGCGTG ATGAGAAGCT GGATCTACAG TGGAGCCTGG AGGGCCATCA
GCTGGGTGTG GTGTCTGTGG ACATAAGCCA CACCCTGCCC ATTGCTGCAT CCAGTCCTCT
TGATGCTCAT ATTCGTCTCT GGGACTTGGA AAACGGCAAA CAGATAAAGT CTATAGATGC
AGGACCTGTG GATGCCTGGA CTTTGGCCTT TTCTCCTGAT TCCCAGTATC TGGCCACAGG
AACTCATGTG GGGAAAGTGA ACATTTTTGG TGTTGAAAGT GGGAAAAAGG AATATTCTTT
GGACACAAGA GGAAAATTCA TTCTTAGTAT TGCATATAGT CCTGATGGGA AGTATCTGGC
CAGTGGCGCT ATAGACGGAA TCATCAATAT TTTTGATATT GCAACTGGAA AACTTCTTCA
TACGCTGGAA GGCCATGCTA TGCCCATTCG CTCCTTGACT TTTTCCCCGG ATTCGCAGCT
CCTTGTCACT GCTTCAGATG ATGGCTACAT CAAGATCTAT GACGTACAAC ATGCCAACTT
GGCTGGCACA CTGAGTGGCC ATGCATCCTG GGTGTTGAAT GTTGCATTTT GTCCAGATGA
CACACACTTT GTTTCCAGTT CATCTGACAA AAGTGTAAAA GTTTGGGATG TTGGAACGAG
GACATGTGTT CACACCTTCT TTGATCACCA GGATCAGGTC TGGGGAGTAA AATACAATGG
AAATGGCTCA AAAATTGTGT CTGTTGGAGA TGACCAGGAA ATTCACATCT ATGATTGTCC
AATTTAAACG TCAAAGTCCT CCAGGCTAAA GCTGCAAAGA GAATGTATAG CTTGATCATG
ACATTCCTTA CCTTTCTAAC TTGTTTAAAA GAAGTATAGC ATTTATTGTA GCAAAAACTT
AAATTTTATA GAAACAGTAT AAATCTTTTC ATGTTTTATT GGAAATGCCG TTAATAGTTT
AACATAAAGA ACTCTTAATG CAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
AAAAAAAAAA AAAAAAAAA
Deduced amino acid sequence: (length: 305) [FASTA format sequence]
MTNQYSILFK QEQAHDDAIW SVAWGTNKKE NSETVVTGSL DDLVKVWKWR DEKLDLQWSL
EGHQLGVVSV DISHTLPIAA SSPLDAHIRL WDLENGKQIK SIDAGPVDAW TLAFSPDSQY
LATGTHVGKV NIFGVESGKK EYSLDTRGKF ILSIAYSPDG KYLASGAIDG IINIFDIATG
KLLHTLEGHA MPIRSLTFSP DSQLLVTASD DGYIKIYDVQ HANLAGTLSG HASWVLNVAF
CPDDTHFVSS SSDKSVKVWD VGTRTCVHTF FDHQDQVWGV KYNGNGSKIV SVGDDQEIHI
YDCPI
SNP mapping information
BLAST on RefSeq (Human): 
TOP
| | Locus | Definition | Score | E value | FL |
|---|
 |
 | WDR61 | WD repeat-containing protein 61 [Homo sapiens]. | 592 | e-169 | O |
|
| WDR69 | WD repeat-containing protein 69 [Homo sapiens]. | 111 | 2e-24 | |
|
| TAF5L | TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform a [Homo sapiens]. | 102 | 6e-22 | |
|
| WDR38 | WD repeat-containing protein 38 [Homo sapiens]. | 102 | 1e-21 | |
|
| WDR5B | WD repeat-containing protein 5B [Homo sapiens]. | 89 | 9e-18 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| Wdr61 | WD repeat-containing protein 61 isoform a [Mus musculus]. | 583 | e-166 | O |
|
| Wdr38 | WD repeat-containing protein 38 [Mus musculus]. | 102 | 6e-22 | |
|
| Taf5 | transcription initiation factor TFIID subunit 5 [Mus musculus]. | 89.7 | 4e-18 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| LOC479068 | PREDICTED: similar to WD repeat domain 61 isoform 1 [Canis familiaris]. | 588 | e-168 | O |
|
| LOC611043 | PREDICTED: similar to WD repeat domain 61 [Canis familiaris]. | 378 | e-105 | |
|
| LOC477397 | PREDICTED: similar to CG7568-PA [Canis familiaris]. | 110 | 4e-24 | |
|
| LOC484741 | PREDICTED: similar to WD repeat domain 51A isoform 1 [Canis familiaris]. | 87.4 | 3e-17 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| WDR61 | WD repeat-containing protein 61 [Bos taurus]. | 593 | e-169 | O |
|
| WDR69 | WD repeat-containing protein 69 [Bos taurus]. | 114 | 2e-25 | |
|
| LOC510413 | PREDICTED: PCAF associated factor 65 beta-like [Bos taurus]. | 103 | 3e-22 | |
|
| WDR38 | WD repeat-containing protein 38 [Bos taurus]. | 92.4 | 8e-19 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
|---|
|
| WDR61 | PREDICTED: WD repeat-containing protein 61 [Sus scrofa]. | 594 | e-170 | |
|
| TAF5L | PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L [Sus scrofa]. | 105 | 7e-23 | |
|
| WDR5 | PREDICTED: WD repeat-containing protein 5 [Sus scrofa]. | 100 | 2e-21 | |
|
| LOC100622360 | PREDICTED: WD repeat-containing protein 38-like [Sus scrofa]. | 95.1 | 7e-20 | |
|
| LOC100627452 | PREDICTED: WD repeat-containing protein 5B-like [Sus scrofa]. | 87.8 | 1e-17 | |
Oligo-microarray probe: TOP
| Probe ID | Rel. | Probe sequence |
|---|
| AGPOA4-19956 | 4.1 | CTAAAGCTGCAAAGAGAATGTATAGCTTGATCATGACATTCCTTACCTTTCTAACTTGTT |
Assembly member: TOP