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[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly] 

Clone Name:  THY01_0124_E07

Library: THY01 (Thymus)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)

Nucleotide sequence:   (length: 1,230)  [FASTA format sequence]
TTCTCTGAAG GGGGGATACG AGAACCACTG AGTGGGAGCT GTGTTGACTA CCATTACTTC
TTCGTTTGTC CTCAATT
ATG TCTGGGATGG TGGCTCTGCG GCTCCCCAGA GGCCTTTGGA
CAGCGGCCTT GACGGTGATG CTGGTGGTGC TGGGTGCTCC AGTGGCTGAG GGCAGAGACT
CTCCACAGGA TTTCGTGTAC CAGTTTAAGT TCGAGTGCTA CTTCTTCAAC GGAACGCAGC
GGGTGCGGGG CGTGGCCAGG TGGGTCTACA ACCAGGAGGA GCACGTGCGC TTCGACAGCG
ACGTGGGGGA GTTCCGGGCG GTGACCCCGC TGGGGCGGCC GACCGCCGAC TACTGGAACG
GCCAGAAGGA CGTCCTGGAG CAGAAGCGGG CCGAGGTGGA CACGGTGTGC AAACACAACT
ACCAGATAGA GGAAGGCACG ACCCTGCAGC GGCGAGTGCA ACCTACAGTG ACTATCTCCC
CATCCAAGGC AGAGGCTCTA AACCACCACA ACCTGCTGGT CTGTGCGGTG ACAGATTTCT
ATCCAAGCCA GGTGAAAGTC CAGTGGTTCC GGAATGGCCA GGAGGAGACA GCTGGCGTTG
TGTCCACTCC TCTTATTAGG AACGGAGACT GGACCTACCA GGTGCTCGTG ATGCTAGAGA
TGAATCTCCA GCGAGGAGAT GTCTACACCT GCCGCGTGGA GCACTCCAGC CTCCAGAACC
CCATCTTGGT GGAGTGGCGG GCACAGTCTG AATCTGCCCA GAGCAAGATG CTGAGCGGTG
TCGGGGGCTT CGTGCTGGGG CTGATCTTCC TCGGGCTGGG CCTTTTCATC CGTCACAGGA
GTCAGAAGGG GCTCGTGCGC TGAATCCTGA AGATACTTTG GGGTTGGTTT TTGCTCTTCT
TAAATGCCTG TCTGTTCTTG CCTGGAATTC CCATCCCCCC TGCCAGCTTG TCCTCTCTGA
GGTCAGATCC TACAGTGACT CTGATGCAGT CACCAGGGCG CTTCCTGTGA TCCCCACCTC
AAGGCTCTGG CTGTGAAGCT TCTTCCTGAA CTGACCCCAG CGCCTCTGCC TGAGTGCAGC
CAGCTGTGTC TACTCAGACC ACAAGGGATT TTCCTGTTCC TATTTCCCCT CAACAGACTG
TGCAAGAGAA GCACATTGAA ACCATTTAAC TGGCTGTAGA GTGCTTTTTT TTTAAAATCA
TAATTAAACA TGATTATGAG TTAAAAAAAA

Deduced amino acid sequence:  (length: 261) [FASTA format sequence]
MSGMVALRLP RGLWTAALTV MLVVLGAPVA EGRDSPQDFV YQFKFECYFF NGTQRVRGVA
RWVYNQEEHV RFDSDVGEFR AVTPLGRPTA DYWNGQKDVL EQKRAEVDTV CKHNYQIEEG
TTLQRRVQPT VTISPSKAEA LNHHNLLVCA VTDFYPSQVK VQWFRNGQEE TAGVVSTPLI
RNGDWTYQVL VMLEMNLQRG DVYTCRVEHS SLQNPILVEW RAQSESAQSK MLSGVGGFVL
GLIFLGLGLF IRHRSQKGLV R


SNP mapping information
SNP IDRel.Chr.Location (cM)


Other Clones Sharing Similar Sequences:      TOP

Change score limit to  


Alignment to Human Genome Sequences:      TOP

Change score limit to  


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100293977PREDICTED: HLA class II histocompatibility antigen, DQ beta 1 chain-like isoform 2 [Homo sapiens]. 379e-105
Contig/Assembly ProteinHLA-DQB1HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]. 376e-104
Contig/Assembly ProteinLOC100507709PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 1 [Homo sapiens]. 3057e-83


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinH2-Ab1histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]. 3201e-87O
Contig/Assembly ProteinH2-Eb1H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. 2932e-79
Contig/Assembly ProteinH2-Eb2histocompatibility 2, class II antigen E beta2 [Mus musculus]. 2592e-69
Contig/Assembly ProteinH2-Obhistocompatibility 2, O region beta locus [Mus musculus]. 2424e-64
Contig/Assembly ProteinLOC68395PREDICTED: LOW QUALITY PROTEIN: h-2 class I histocompatibility antigen, Q8 alpha chain [Mus musculus]. 68.21e-11


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinHLA-DQB1major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. 379e-105O
Contig/Assembly ProteinHLA-DRB1DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris]. 3085e-84
Contig/Assembly ProteinHLA-DOBmajor histocompatibility complex, class II, DO beta [Canis lupus familiaris]. 2663e-71O
Contig/Assembly ProteinLOC607827PREDICTED: similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) [Canis familiaris]. 74.72e-13O
Contig/Assembly ProteinAZGP1PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis familiaris]. 62.49e-10


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLA-DQBMHC cell surface glycoprotein [Bos taurus]. 392e-109
Contig/Assembly ProteinBLA-DQBboLa class II histocompatibility antigen, DQB*0101 beta chain precursor [Bos taurus]. 384e-107
Contig/Assembly ProteinBOLA-DQBmajor histocompatibility complex, class II, DQ beta [Bos taurus]. 371e-103
Contig/Assembly ProteinBOLA-DYBmajor histocompatibility complex, class II, DY beta [Bos taurus]. 2956e-80
Contig/Assembly ProteinBOLA-DOBmajor histocompatibility complex, class II, DO beta [Bos taurus]. 2532e-67


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinSLA-DQB1SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa]. 468e-132
Contig/Assembly ProteinSLA-DRB1MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa]. 3092e-84
Contig/Assembly ProteinLOC100513292PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 2893e-78
Contig/Assembly ProteinLOC100519552PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. 2853e-77
Contig/Assembly ProteinLOC100626428PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102 alpha chain-like [Sus scrofa]. 71.21e-12


Oligo-microarray probe:      TOP
Probe IDRel.Probe sequence
AGPOA4-201764.1CAACAGACTGTGCAAGAGAAGCACATTGAAACCATTTAACTGGCTGTAGAGTGCTTTTTT


Assembly member:      TOP
ReleaseContig/SingletClonesDirection
2003053120030531C-00007197fwd
2003082620030826C-003446102fwd
2004020420040204C-003763128fwd
2005032220050322C-000213144fwd
2006061120060611C-000185144fwd
2007080620070806C-000310144fwd
2008051520080515C-000581144fwd
2010100120101001C-011145176fwd
2011060120110601C-001851201fwd