[Help]
[Other Clones] [Human Genome] [RefSeq] [UniGene] [Assembly]
Clone Name:
THY01_0124_E07
Library: THY01 (Thymus)
Individual: LWD1, Crossbred pig ((Landrace x Large White) x Duroc, Western)
Nucleotide sequence:
(length: 1,230)
[FASTA format sequence]
TTCTCTGAAG GGGGGATACG AGAACCACTG AGTGGGAGCT GTGTTGACTA CCATTACTTC
TTCGTTTGTC CTCAATTATG TCTGGGATGG TGGCTCTGCG GCTCCCCAGA GGCCTTTGGA
CAGCGGCCTT GACGGTGATG CTGGTGGTGC TGGGTGCTCC AGTGGCTGAG GGCAGAGACT
CTCCACAGGA TTTCGTGTAC CAGTTTAAGT TCGAGTGCTA CTTCTTCAAC GGAACGCAGC
GGGTGCGGGG CGTGGCCAGG TGGGTCTACA ACCAGGAGGA GCACGTGCGC TTCGACAGCG
ACGTGGGGGA GTTCCGGGCG GTGACCCCGC TGGGGCGGCC GACCGCCGAC TACTGGAACG
GCCAGAAGGA CGTCCTGGAG CAGAAGCGGG CCGAGGTGGA CACGGTGTGC AAACACAACT
ACCAGATAGA GGAAGGCACG ACCCTGCAGC GGCGAGTGCA ACCTACAGTG ACTATCTCCC
CATCCAAGGC AGAGGCTCTA AACCACCACA ACCTGCTGGT CTGTGCGGTG ACAGATTTCT
ATCCAAGCCA GGTGAAAGTC CAGTGGTTCC GGAATGGCCA GGAGGAGACA GCTGGCGTTG
TGTCCACTCC TCTTATTAGG AACGGAGACT GGACCTACCA GGTGCTCGTG ATGCTAGAGA
TGAATCTCCA GCGAGGAGAT GTCTACACCT GCCGCGTGGA GCACTCCAGC CTCCAGAACC
CCATCTTGGT GGAGTGGCGG GCACAGTCTG AATCTGCCCA GAGCAAGATG CTGAGCGGTG
TCGGGGGCTT CGTGCTGGGG CTGATCTTCC TCGGGCTGGG CCTTTTCATC CGTCACAGGA
GTCAGAAGGG GCTCGTGCGC TGAATCCTGA AGATACTTTG GGGTTGGTTT TTGCTCTTCT
TAAATGCCTG TCTGTTCTTG CCTGGAATTC CCATCCCCCC TGCCAGCTTG TCCTCTCTGA
GGTCAGATCC TACAGTGACT CTGATGCAGT CACCAGGGCG CTTCCTGTGA TCCCCACCTC
AAGGCTCTGG CTGTGAAGCT TCTTCCTGAA CTGACCCCAG CGCCTCTGCC TGAGTGCAGC
CAGCTGTGTC TACTCAGACC ACAAGGGATT TTCCTGTTCC TATTTCCCCT CAACAGACTG
TGCAAGAGAA GCACATTGAA ACCATTTAAC TGGCTGTAGA GTGCTTTTTT TTTAAAATCA
TAATTAAACA TGATTATGAG TTAAAAAAAA
Deduced amino acid sequence: (length: 261) [FASTA format sequence]
MSGMVALRLP RGLWTAALTV MLVVLGAPVA EGRDSPQDFV YQFKFECYFF NGTQRVRGVA
RWVYNQEEHV RFDSDVGEFR AVTPLGRPTA DYWNGQKDVL EQKRAEVDTV CKHNYQIEEG
TTLQRRVQPT VTISPSKAEA LNHHNLLVCA VTDFYPSQVK VQWFRNGQEE TAGVVSTPLI
RNGDWTYQVL VMLEMNLQRG DVYTCRVEHS SLQNPILVEW RAQSESAQSK MLSGVGGFVL
GLIFLGLGLF IRHRSQKGLV R
SNP mapping information
SNP ID | Rel. | Chr. | Location (cM) |
---|
BLAST on RefSeq (Human): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LOC100293977 | PREDICTED: HLA class II histocompatibility antigen, DQ beta 1 chain-like isoform 2 [Homo sapiens]. | 379 | e-105 | |
|
| HLA-DQB1 | HLA class II histocompatibility antigen, DQ beta 1 chain isoform 1 precursor [Homo sapiens]. | 376 | e-104 | |
|
| LOC100507709 | PREDICTED: HLA class II histocompatibility antigen, DRB1-7 beta chain-like isoform 1 [Homo sapiens]. | 305 | 7e-83 | |
BLAST on RefSeq (Mouse): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| H2-Ab1 | histocompatibility 2, class II antigen A, beta 1 precursor [Mus musculus]. | 320 | 1e-87 | O |
|
| H2-Eb1 | H-2 class II histocompatibility antigen, I-E beta chain precursor [Mus musculus]. | 293 | 2e-79 | |
|
| H2-Eb2 | histocompatibility 2, class II antigen E beta2 [Mus musculus]. | 259 | 2e-69 | |
|
| H2-Ob | histocompatibility 2, O region beta locus [Mus musculus]. | 242 | 4e-64 | |
|
| LOC68395 | PREDICTED: LOW QUALITY PROTEIN: h-2 class I histocompatibility antigen, Q8 alpha chain [Mus musculus]. | 68.2 | 1e-11 | |
BLAST on RefSeq (Dog): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| HLA-DQB1 | major histocompatibility complex, class II, DQ beta 1 [Canis lupus familiaris]. | 379 | e-105 | O |
|
| HLA-DRB1 | DLA class II histocompatibility antigen, DR-1 beta chain precursor [Canis lupus familiaris]. | 308 | 5e-84 | |
|
| HLA-DOB | major histocompatibility complex, class II, DO beta [Canis lupus familiaris]. | 266 | 3e-71 | O |
|
| LOC607827 | PREDICTED: similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) [Canis familiaris]. | 74.7 | 2e-13 | O |
|
| AZGP1 | PREDICTED: similar to Zinc-alpha-2-glycoprotein precursor (Zn-alpha-2-glycoprotein) (Zn-alpha-2-GP) [Canis familiaris]. | 62.4 | 9e-10 | |
BLAST on RefSeq (Cattle): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| LA-DQB | MHC cell surface glycoprotein [Bos taurus]. | 392 | e-109 | |
|
| BLA-DQB | boLa class II histocompatibility antigen, DQB*0101 beta chain precursor [Bos taurus]. | 384 | e-107 | |
|
| BOLA-DQB | major histocompatibility complex, class II, DQ beta [Bos taurus]. | 371 | e-103 | |
|
| BOLA-DYB | major histocompatibility complex, class II, DY beta [Bos taurus]. | 295 | 6e-80 | |
|
| BOLA-DOB | major histocompatibility complex, class II, DO beta [Bos taurus]. | 253 | 2e-67 | |
BLAST on RefSeq (Pig): TOP
| | Locus | Definition | Score | E value | FL |
---|
|
| SLA-DQB1 | SLA class II histocompatibility antigen, DQ haplotype C beta chain precursor [Sus scrofa]. | 468 | e-132 | |
|
| SLA-DRB1 | MHC class II histocompatibility antigen SLA-DRB1 [Sus scrofa]. | 309 | 2e-84 | |
|
| LOC100513292 | PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. | 289 | 3e-78 | |
|
| LOC100519552 | PREDICTED: DLA class II histocompatibility antigen, DR-1 beta chain-like [Sus scrofa]. | 285 | 3e-77 | |
|
| LOC100626428 | PREDICTED: class I histocompatibility antigen, Gogo-C*0101/C*0102 alpha chain-like [Sus scrofa]. | 71.2 | 1e-12 | |
Oligo-microarray probe: TOP
Probe ID | Rel. | Probe sequence |
---|
AGPOA4-20176 | 4.1 | CAACAGACTGTGCAAGAGAAGCACATTGAAACCATTTAACTGGCTGTAGAGTGCTTTTTT |
Assembly member: TOP