Supplementary Table 1

This page indicates the current status of sequencing and assembling of the PEDE ESTs. Numbers in this table will be automatically updated when a new assembly is released.

Sequencing

Library	Tissue	Origin	Clones	EST reads	High quality reads
THY01	Thymus	LWD	2,158	11,522	10,190
SPL01	Spleen	LWD	1,457	9,764	8,974
OVRT1	Ovary	Landrace	819	14,592	12,439
KDN01	Kidney	LWD	748	9,600	7,182
MLTL1	Longissimus muscle	Landrace	413	8,637	7,933
CLNT1	Colon	Landrace	537	14,592	11,325
DCI01	Dendritic cells (immature)	Landrace	887	11,327	9,468
OVRM1	Ovary	Meishan	3,309	20,735	17,924
ADR01	Adrenal gland	LWD	901	9,792	9,070
PTG01	Pituitary gland	LWD	864	10,272	8,678
TCH01	Trachea	LWD	1,412	9,888	7,903
MLN01	Mesenteric lymph nodes	LWD	1,176	9,792	8,972
TES01	Testis	LWD	697	10,752	7,556
PST01	Prostate	LWD	691	9,600	7,748
PCT01	Placenta	LWD	161	3,456	2,485
BMWN1	Bone marrow	Landrace	148	9,600	6,101
BFLT1	Brain (frontal lobe)	Landrace	991	14,592	11,900
UTR01	Uterus	LWD	1,441	9,550	8,984
BKFL1	Backfat	Landrace	453	10,560	8,538
LNG01	Lung	LWD	1,331	9,599	7,908
LVR01	Liver	LWD	779	9,120	8,284
LVRM1	Liver	Meishan	1,844	19,572	17,544
SMG01	Submaxillary gland	LWD	458	9,888	8,706
OVR01	Ovary	LWD	1,416	9,598	8,234
SKNB1	Skin	Berkshire	687	9,504	6,101
PBL01	PBMC	LWD	957	10,272	8,979
HTMT1	Hypothalamus	Landrace	1,663	14,591	10,480
AMP01	Alveolar macrophages	LWD	1,416	9,791	7,725
ITT01	Intestine	LWD	1,265	9,792	9,190
Total			31,079	320,350	266,521

PBMC: Peripheral blood mononuclear cells
LWD: (Landrace x Large White) x Duroc

Assemblies

Release: 20110601

Contigs	17,183
Singlets	120,928

Number of members	Contigs
2	6,740
3	2,552
4	1,422
5	998
6	759
7	514
8	428
9	361
10	257
11 - 20	1,494
21 - 30	574
31 - 40	284
41 - 50	177
51 - 100	345
101 - 200	163
201 - 300	43
301 - 400	19
401 - 500	19
501 - 1000	24
1001 +	10