Supplementary Table 3 Supplementary Table 3Confirmation of SNPs detected in the PEDE database by using data for eight other individuals. The SNPs in this table occurred specifically between the Meishan (oriental) breed and the western breeds in the database.
LWD, (Landrace x Large White) x Duroc
aThe Meishan pig used for the confirmation of the SNPs was a different individual from those that provided tissues to construct the cDNA libraries.
| Assembly | Locus | Location of SNP | In PEDE Database | In other individuals | ||||||||
| LWD | Meishan | Western Breeds | Oriental Breeds | Other | ||||||||
| Landrace | Large White | Berkshire | Duroc | Meishana | Jinhua | Wild Boar | Goettingen Miniature | |||||
| 20030531C-000104 | RODH | 305 | C | G | C | C | C | C | G | G | C | G |
| 443 | A | G | A | A | A/G | A | G | G | A | G | ||
| 20030531C-000169 | CIRBP | 336 | G | C | G | G | G | G | C | C | C | C |
| 20030531C-000211 | APOH | 208 | T | C | T | C/T | T | T | C | C | C | C |
| 20030531C-000394 | LAP3 | 160 | A | G | G | G | G | G | G | G | G | G |
| 166 | G | A | G | G | G | G | A | A | A | A | ||
| 20030531C-000510 | PLOD | 426 | G | A | G | G | G | G | A/G | A/G | G | G |
| 20030531C-003018 | GJB1 | 332 | A | C | A | A | A | A | C | C | A | C |
| 542 | C | T | C | C | C | C | T | T | C | T | ||
| 602 | C | T | C | C | C | C | T | T | C | T | ||
| 20030531C-003267 | C1orf24 | 809 | C | T | C/T | C | C/T | C | C/T | C | C | T |
| 951 | T | G | T | T | T | T | G/T | T | T | G | ||
| 1228 | A | G | A | A | A | A | G | G | A | G | ||
| 20030531C-003380 | GSTO1 | 291 | A | G | A/G | A | A | A | G | G | A | G |
| 313 | G | C | G | G | G | G | G | G | G | G | ||