[Overview] [RefSeq] [UniGene] [Cluster & SNP] [Alignment]
Assembly Name: 20040204C-001938
Length:
1,178
Sequence:
[FASTA format sequence]
TTCGTGTAGG GGAGGCTGGA AGCCGCAGGA GCGGGAGACG GTGGAGGGGA TTTTGAGAAG
AAAACTGCGG TAGCGACCTC ACTCGGTGGT ACAAGAGGGG AACGCTAGTC CCTCCGAAAG
CCGGGTTACT GCGAACGCAC CAGCTGAGCC CTTAGTACTG CAACCCCCAC CCTCCTTTGG
TTTGTGGAGG AGCCTGACCA CTCTGCCTCT TATGGCCACA ATGCTGACCG CCCGCCTCTC
CAGACCCCTG TCGCAGCTCC CAAGGAAAAC CCTGAATTTC TCTGAGAGAG AAAATGGAGC
AAGAGGCTCG CTGCTGTTTT ACTCTCCCTC CTTTGTCCCT GGCAGCCGTC GGACTTATGC
TGATTCGGTG AACCCGGTTG GCAGCAAAGC TGTCCTGGTC ACAGGCTGTG ACTCTGGATT
TGGGTTCTCA CTGGCCAAGC ATCTGCATTC AAAAGGCTTC CTTGTATTTG CTGGCTGCTT
GATGAAGGAC AAAGGGCATG ACGGGGTCAA GGAACTGGAC AGCTTGAAGA GTGATCGATT
AAGAACCGTC CAGCTCAATG TCTGCAAAAG TGAAGAAGTA GAGAAAGTGG TGGAGACCAT
CCGCTCGAGC TTGCAGGACC CTGAGAAAGG CTTGTGGGGC CTGGTTAACA ATGCAGGCAT
CTCAACGTTC GGGGACGTGG AATTCACCAG CATGGAGACC TACAAGGAGG TGGCAGAAGT
GAACCTCTGG GGCACGGTGC GGGTGACAAA ATCTTTTCTC CCTCTCATCC GGAGGGCCAA
AGGCCGCGTG GTCAACATCA GCAGCATAAT GGGCGCTTGG CCAATGTGAG CCGCTCCCCC
TACTGCATCA CCAAGTTCGG GGTGGAGGCT TTCTCTGACT GCCTGCGCTA CGAGATGCAC
CCTCTAGGAG TGAAGGTCAG CGTGGTGGAG CCCGGCAACT TCATCGTCGC CACCAGCCTC
TACAGCCCTG AGCGCATCCG GGCCATCGCC ACTAAGATGT GGGAGCAGGT GCCCGAGACG
GTGCGTCAAG ACTACGGCAG GAAGTACTTT GATGAGATGG TCGCCAGGAT GGAGAACTTC
TGCAACAGCG GCTCCACGGA CACGTCTCCC GTCATCAATG CTGTCACCCA CGCCCTGACC
TCCACCACCC CCTACACTCG CTACCACCCC ATGGACTA
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | BDH1 | 3-hydroxybutyrate dehydrogenase (heart, mitochondrial) | 305 | e-142 | O |
|
|
| BDH1 | 3-hydroxybutyrate dehydrogenase (heart, mitochondrial) | 305 | e-142 | O |
|
|
| BDH1 | 3-hydroxybutyrate dehydrogenase (heart, mitochondrial) | 305 | e-142 | O |
|
|
| HSD17B2 | hydroxysteroid (17-beta) dehydrogenase 2 | 117 | 2e-26 | O |
|
|
| HSD17B6 | 3-hydroxysteroid epimerase | 110 | 2e-24 | O |
|
|
| DHRS9 | dehydrogenase/reductase (SDR family) member 9 | 108 | 4e-41 | O |
|
|
| RDH16 | microsomal NAD+-dependent retinol dehydrogenase 4 | 108 | 2e-41 | O |
|
|
| DHRS9 | dehydrogenase/reductase (SDR family) member 9 | 108 | 4e-41 | O |
|
|
| HSD11B2 | hydroxysteroid (11-beta) dehydrogenase 2 | 99.8 | 5e-32 | O |
|
|
| SDR-O | orphan short-chain dehydrogenase / reductase | 97.8 | 1e-20 | O |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
|
| Bdh1 | 3-hydroxybutyrate dehydrogenase (heart, mitochondrial) | 296 | e-141 | O |
|
|
| Hsd17b2 | hydroxysteroid (17-beta) dehydrogenase 2 | 125 | 4e-29 | O |
|
|
| Rdh16 | retinol dehydrogenase 6 | 115 | 5e-26 | O |
|
|
| Rdh1 | retinol dehydrogenase 1 (all trans) | 114 | 1e-25 | O |
|
|
| Rdhs | retinol dehydrogenase similar | 112 | 2e-44 | O |
|
|
| similar to Cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like | 112 | 8e-45 | O | |
|
|
| Rdh9 | retinol dehydrogenase 9 | 109 | 6e-44 | O |
|
|
| Dhrs9 | dehydrogenase/reductase (SDR family) member 9 | 107 | 2e-39 | O |
|
|
| BC089597 | cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like | 107 | 4e-43 | O |
|
|
| Hsd11b2 | hydroxysteroid 11-beta dehydrogenase 2 | 101 | 4e-31 | O |
| Definition | Score | E value | FL | ||
|---|---|---|---|---|---|
 |
 | BP442645 full-length enriched swine cDNA library, adult liver Sus scrofa cDNA clone LVR010026B11 5', mRNA sequence | 1542 | 0.0 | |
|
|
| Homo sapiens 3-hydroxybutyrate dehydrogenase (heart, mitochondrial) (BDH), nuclear gene encoding mitochondrial protein, mRNA | 910 | 0.0 | O |
|
|
| Mus musculus 3-hydroxybutyrate dehydrogenase (heart, mitochondrial) (Bdh), mRNA | 626 | e-178 | O |
|
|
| Sus scrofa hydroxysteroid 11-beta dehydrogenase 2 mRNA, complete cds | 44.1 | 0.016 | |
|
|
| 602025543F1 NCI_CGAP_Li9 Mus musculus cDNA clone IMAGE:4160650 5'. | 40.1 | 0.26 | |
|
|
| Homo sapiens calcium channel, voltage-dependent, P/Q type, alpha 1A subunit (CACNA1A), transcript variant 2, mRNA | 40.1 | 0.26 | |
|
|
| Mus musculus retinol dehydrogenase 7 (Rdh7), mRNA | 40.1 | 0.26 | |
|
|
| Mus musculus CRAD-2 mRNA for cis-retinol/androgen dehydrogenase type 2, complete cds. | 40.1 | 0.26 | |
|
|
| Homo sapiens orphan short-chain dehydrogenase | 38.2 | 1.0 | |
|
|
| wh51a07.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE:2384244 3' similar to contains LOR1.b2 LOR1 LOR1 repetitive element ;, mRNA sequence | 38.2 | 1.0 |
|
20040204C-001938 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVRM1_0109_C11.b.ab1 : nagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0026_B11.b.ab1 : cttagggtgaatatanngacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0013_F12.b.ab1 :
20040204C-001938 : .........................TTCGTGTAGGGGAGGCTGGAAGCCGCAGGAGCGGG
---------+---------+---------+---------+---------+---------+ 35
LVRM1_0109_C11.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxTTCGTGTAGGGGAGGCTGGAAGCCGCAGGAGCGGG
LVR01_0026_B11.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxTTCGTGTAGGGGAGGCTGGAAGCCGCAGGAGCGGG
LVRM1_0013_F12.b.ab1 :
20040204C-001938 : AGACGGTGGAGGGGATTTTGAGAAGAAAACTGCGGTAGCGACCTCACTCGGTGGTACAAG
---------+---------+---------+---------+---------+---------+ 95
LVRM1_0109_C11.b.ab1 : AGACGGTGGAGGGGATTTTGAGAAGAAAACTGCGGTAGCGACCTCACTCGGTGGTACAAG
LVR01_0026_B11.b.ab1 : AGACGGTGGAGGGGATTTTGAGAAGAAAACTGCGGTAGCGACCTCACTCGGTGGTACAAG
LVRM1_0013_F12.b.ab1 :
20040204C-001938 : AGGGGAACGCTAGTCCCTCCGAAAGCCGGGTTACTGCGAACGCACCAGCTGAGCCCTTAG
---------+---------+---------+---------+---------+---------+ 155
LVRM1_0109_C11.b.ab1 : AGGGGAACGCTAGTCCCTCCGAAAGCCGGGTTACTGCGAACGCACCAGCTGAGCCCTTAG
LVR01_0026_B11.b.ab1 : AGGGGAACGCTAGTCCCTCCGAAAGCCGGGTTACTGCGAACGCACCAGCTGAGCCCTTAG
LVRM1_0013_F12.b.ab1 :
20040204C-001938 : TACTGCAACCCCCACCCTCCTTTGGTTTGTGGAGGAGCCTGACCACTCTGCCTCTTATGG
---------+---------+---------+---------+---------+---------+ 215
LVRM1_0109_C11.b.ab1 : TACTGCAACCCCCACCCTCCTTTGGTTTGTGGAGGAGCCTGACCACTCTGCCTCTTATGG
LVR01_0026_B11.b.ab1 : TACTGCAACCCCCACCCTCCTTTGGTTTGTGGAGGAGCCTGACCACTCTGCCTCTTATGG
LVRM1_0013_F12.b.ab1 :
20040204C-001938 : CCACAATGCTGACCGCCCGCCTCTCCAGACCCCTGTCGCAGCTCCCAAGGAAAACCCTGA
---------+---------+---------+---------+---------+---------+ 275
LVRM1_0109_C11.b.ab1 : CCACAATGCTGACCGCCCGCCTCTCCAGGCCCCTGTCACAGCTCCCAAGGAAAACCCTGA
LVR01_0026_B11.b.ab1 : CCACAATGCTGACCGCCCGCCTCTCCAGACCCCTGTCGCAGCTCCCAAGGAAAACCCTGA
LVRM1_0013_F12.b.ab1 :
20040204C-001938 : ATTTCTCTGAGAGAGAAAATGGAGCAAGAGGCTCGCTGCTGTTTTACTCTCCCTCCTTTG
---------+---------+---------+---------+---------+---------+ 335
LVRM1_0109_C11.b.ab1 : ATTTCTCTGACAGAGAAAATGGAGCAAGAGGCTCGCTGCTGTTTTACTCTCCCTCCTTTG
LVR01_0026_B11.b.ab1 : ATTTCTCTGAGAGAGAAAATGGAGCAAGAGGCTCGCTGCTGTTTTACTCTCCCTCCTTTG
LVRM1_0013_F12.b.ab1 :
20040204C-001938 : TCCCTGGCAGCCGTCGGACTTATGCTGATTCGGTGAACCCGGTTGGCAGCAAAGCTGTCC
---------+---------+---------+---------+---------+---------+ 395
LVRM1_0109_C11.b.ab1 : TCCCTGGCGGCCGTCGGACTTATGCTGATTCAGTGAACCCGGTTGGTAGCAAAGCTGTCC
LVR01_0026_B11.b.ab1 : TCCCTGGCAGCCGTCGGACTTATGCTGATTCGGTGAACCCGGTTGGCAGCAAAGCTGTCC
LVRM1_0013_F12.b.ab1 :
20040204C-001938 : TGGTCACAGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCATTCAAAAG
---------+---------+---------+---------+---------+---------+ 455
LVRM1_0109_C11.b.ab1 : TGGTCACAGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCATTCAAAAG
LVR01_0026_B11.b.ab1 : TGGTCACAGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCATTCAAAAG
LVRM1_0013_F12.b.ab1 : agttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20040204C-001938 : GCTTCCTTGTATTTGCTGGCTGCTTGATGAAGGACAAAGGGCATGACGGGGTCAAGGAAC
---------+---------+---------+---------+---------+---------+ 515
LVRM1_0109_C11.b.ab1 : GCTTCCTTGTATTTGCTGGCTGCTTGATGAAAGACAAAGGGCATGACGGGGTCAAGGAAC
LVR01_0026_B11.b.ab1 : GCTTCCTTGTATTTGCTGGCTGCTTGATGAAGGACAAAGGGCATGACGGGGTCAAGGAAC
LVRM1_0013_F12.b.ab1 : xxxxCCTTGTATTTGCTGGCTGCTTGATGAAGGACAAAGGGCATGACGGGGTCAAGGAAC
20040204C-001938 : TGGACAGCTTGAAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCAAAAGTGAAG
---------+---------+---------+---------+---------+---------+ 575
LVRM1_0109_C11.b.ab1 : TGGACAGCTTGTAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCTAAAGTGAAG
LVR01_0026_B11.b.ab1 : TGGACAGCTTGAAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCAAAAGTGAAG
LVRM1_0013_F12.b.ab1 : TGGACAGCTTGAAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCAAAAGTGAAG
20040204C-001938 : AAGTAGAGAAAGTGGTGGAGACCATCCGCTCGAGCTTGCAGGACCCTGAGAAAGGCTTGT
---------+---------+---------+---------+---------+---------+ 635
LVRM1_0109_C11.b.ab1 : AAGTACAGAAAGTGGTGGAGACCATCCGCCCGAGCTTGCAGGACCCTGAGAAAGGCTCGT
LVR01_0026_B11.b.ab1 : AAGTAGAGAAAGTGGTGGAGACCATCCGCTCGAGCTTGCAGGACCCTGAGAAAGGCTTGT
LVRM1_0013_F12.b.ab1 : AAGTAGAGAAAGTGGTGGAGACCATCCGCTCGAGCTTGCAGGACCCTGAGAAAGGCTTGT
20040204C-001938 : GGGGCCTGGTTAACAATGCAGGCATCTCAACGTTCGGGGACGTGGAATTCACCAGCATGG
---------+---------+---------+---------+---------+---------+ 695
LVRM1_0109_C11.b.ab1 : GGGGCCTGGTTAACATTGCATGCATCTCAACGTTCGGGGACGTGGCATTCACCCGCATGG
LVR01_0026_B11.b.ab1 : GGGGCCTGGTTAACAATGCAGGCATCTCAACGTTCGGGGACGTGGAATTCACCAGCATGG
LVRM1_0013_F12.b.ab1 : GGGGCCTGGTTAACAATGCAGGCATCTCAACGTTCGGGGACGTGGAATTCACCAGCATGG
20040204C-001938 : AGACC*TACAAGGAGGTGGCAGAAGTGAACCTCTGGGGCACGGTGCGGGTGACAAAATCT
---------+---------+---------+---------+---------+---------+ 754
LVRM1_0109_C11.b.ab1 : AGATC*TACAAA*ATGTGGCAGAAGTGAAACTCTGGGGCACGGTGCAGGTGACAAAATCt
LVR01_0026_B11.b.ab1 : AGACC*TACAAGGAGGTGGCAGAAGTGAACCTCTGGGGCACGGTGCGGGTGACAAAATCC
LVRM1_0013_F12.b.ab1 : AGACCATACAAGGAGGTGGCAGAAGTGAACCTCTGGGGCACGGTGCGGGTGACAAAATCT
20040204C-001938 : TTTCTCCCTCTCATCCGGAGGGCCAAAGGCCGCGTGGTCAACATCAGCAGCATAATGGGC
---------+---------+---------+---------+---------+---------+ 814
LVRM1_0109_C11.b.ab1 : tt
LVR01_0026_B11.b.ab1 : TTTCTCCCTCTCATCCGGAGGGCCAAAGatttccaagaaacaacaacctcaaaatgtcca
LVRM1_0013_F12.b.ab1 : TTTCTCCCTCTCATCCGGAGGGCCAAAGGCCGCGTGGTCAACATCAGCAGCATAATGGGC
20040204C-001938 : GCTTGGCCAATGTGAGCCGCTCCCCCTACTGCATCACCAAGTTCGGGGTGGAGGCTTTCT
---------+---------+---------+---------+---------+---------+ 874
LVRM1_0109_C11.b.ab1 :
LVR01_0026_B11.b.ab1 : agtcatcaaggaccccatctggacgggaaagcttggtactgctcgctgttttactaccaa
LVRM1_0013_F12.b.ab1 : GCTTGGCCAATGTGAGCCGCTCCCCCTACTGCATCACCAAGTTCGGGGTGGAGGCTTTCT
20040204C-001938 : CTGACTGCCTGCGCTACGAGATGCACCCTCTAGGAGTGAAGGTCAGCGTGGTGGAGCCCG
---------+---------+---------+---------+---------+---------+ 934
LVRM1_0109_C11.b.ab1 :
LVR01_0026_B11.b.ab1 : gttcccttgtcacctgggcaagtcccttctccattttccacctcactctcctcatttaaa
LVRM1_0013_F12.b.ab1 : CTGACTGCCTGCGCTACGAGATGCACCCTCTAGGAGTGAAGGTCAGCGTGGTGGAGCCCG
20040204C-001938 : GCAACTTCATCGTCGCCACCAGCCTCTACAGCCCTGAGCGCATCCGGGCCATCGCCACTA
---------+---------+---------+---------+---------+---------+ 994
LVRM1_0109_C11.b.ab1 :
LVR01_0026_B11.b.ab1 : aatagcagtaatgacaacaatcataaccattcctaacacgctgtgacccaggcagaacat
LVRM1_0013_F12.b.ab1 : GCAACTTCATCGTCGCCACCAGCCTCTACAGCCCTGAGCGCATCCGGGCCATCGCCACTA
20040204C-001938 : AGATGTGGGAGCAGGTGCCCGAGACGGTGCGTCAAGACTACGGCAGGAAGTACTTTGATG
---------+---------+---------+---------+---------+---------+ 1054
LVRM1_0109_C11.b.ab1 :
LVR01_0026_B11.b.ab1 : gctctaaaaccaactgcctgcctaatttctaccaccccttttaagggaaacagcagttat
LVRM1_0013_F12.b.ab1 : AGATGTGGGAGCAGGTGCCCGAGACGGTGCGTCAAGACTACGGCAGGAAGTACTTTGATG
20040204C-001938 : AGATGGTCGCCAGGATGGAGAACTTCTGCAACAGCGGCTCCACGGACACGTCTCCCGTCA
---------+---------+---------+---------+---------+---------+ 1114
LVRM1_0109_C11.b.ab1 :
LVR01_0026_B11.b.ab1 : tttttatttcccggaaaaacccccaaaacaaccccagggtttttttcatttttgcccccc
LVRM1_0013_F12.b.ab1 : AGATGGTCGCCAGGATGGAGAACTTCTGCAACAGCGGCTCCACGGACACGTCTCCCGTCA
20040204C-001938 : TCAATGCTGTCACCCACGCCCTGACCTCCACCACCCCCTACACTCGCTACCACCCCATGG
---------+---------+---------+---------+---------+---------+ 1174
LVRM1_0109_C11.b.ab1 :
LVR01_0026_B11.b.ab1 : aaggtttccccccccccaaccaaaaaagttctaaaaaaatgggaaagaaaaaaaactttt
LVRM1_0013_F12.b.ab1 : TCAATGCTGTCACCCACGCCCTGACCTCCACCACCCCCTACACTCGCTACCACCCCATGG
20040204C-001938 : ACTA........................................................
---------+---------+---------+---------+---------+---------+ 1178
LVRM1_0109_C11.b.ab1 :
LVR01_0026_B11.b.ab1 : ttttaaaaaaaaaaaacaaaaaccccc
LVRM1_0013_F12.b.ab1 : ACTActactggtgggtgcgaatgcaaatcatgacccagttgcctgggaccatctccgaca
20040204C-001938 : ............................................................
---------+---------+---------+---------+---------+---------+ 1178
LVRM1_0109_C11.b.ab1 :
LVR01_0026_B11.b.ab1 :
LVRM1_0013_F12.b.ab1 : aga
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