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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20060611S-033288

Length: 569

Sequence:  [FASTA format sequence]
TTTTATTTTT TNNTTNNTTT TTTTNTTTTT TTTTTTTCTT TTTTNTCCTA CCXXXXXXXX
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXCTCGACT
CCGACGCCGC TGCCGCCGCA GGCCCCTCCA CGCCCACACC CCCTACCCAG TGCCCAGCCA
TGGAGGCCAT CAAGAAGAAG ATGCAGATGC TGAAGCTGGA CAAGGAGAAC GCCATCGACC
GGGCCGAGCA GGCGGAGTCG GATAAGAAAG CTGCTGAGGA GAAGTGCAAG CAGGTGGGGG
AGGAGCTGAC GCACCTCCAC AAGAAGCTGA AGGGGACAGA GGATGAGCTG GACCTATACT
CCGAAAACCT GAAGGACGCG CAAGAGTAAC TGGAGTTGAG CTATATGAAA GCCTCCGACT
CCAAAGGGGA TGTAGCAGCT CTCAATCAGC GCATTCAACT CCCTCAGGAC GAGAAGCACA
GGTCTCAAGA ACGACTATCC ACAGCCCTGC CTAATCTCGA AGAGGCAGAA CAGGCTGCAG
ATGCAACCCA GAGACGAACG AAGGTGACAA AAACCCGCGC CCTGTACGAA TCCGAAAAGA
TGGTGATTCA TGATAAGCAG CTCGCAGAGG ACAAATCCAC TGCCGATGAC GCCTACGACC
ACTTCAAAGA AGCAGCCCGT AAATTGATAA TGCCGCGACA CGTATCTTTC ATGCCTCTGA
GCCTGTCAAG TGTCCTACTA AATTCGCGCG ACCGAGAGAA CACCCCTCGA TGCCACCATC
CATATGCGTC TCCCATCACC CATTCCGAAT CGCATTCATA AAGTAAGATA ATATCCGATC
ACCATAACCT CAATAGATAC CATACAAGAG CTCCCCCAAA CATCTTTTAC CAG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		TPM1	tropomyosin 1 (alpha)	197	5e-51	O
		TPM1	tropomyosin 1 (alpha)	197	5e-51	O
		TPM1	tropomyosin 1 (alpha)	197	5e-51	O
		TPM1	tropomyosin 1 (alpha)	197	5e-51	O
		TPM2	tropomyosin 2 (beta)	191	3e-49	O
		TPM2	tropomyosin 2 (beta)	191	3e-49	O
		TPM1	tropomyosin 1 (alpha)	160	6e-40	O
		TPM1	tropomyosin 1 (alpha)	160	6e-40	O
		TPM3	tropomyosin 3	115	2e-26	O
		TPM4	tropomyosin 4	92.4	2e-19	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Tpm1	tropomyosin 1, alpha	197	6e-51	O
		Tpm2	tropomyosin 2, beta	193	1e-49	O
		Tpm3	tropomyosin 3, gamma	190	9e-49	O
		Tpm4	tropomyosin 4	89.7	2e-18	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC609879	similar to tropomyosin 1 (alpha)	222	2e-58	O
		LOC609879	similar to tropomyosin 1 (alpha)	222	2e-58	O
		TPM1	tropomyosin 1 (alpha)	197	5e-51	O
		TPM1	tropomyosin 1 (alpha)	197	5e-51	O
		TPM1	tropomyosin 1 (alpha)	197	5e-51	O
		TPM1	tropomyosin 1 (alpha)	197	5e-51	O
		TPM1	tropomyosin 1 (alpha)	197	5e-51	O
		TPM1	tropomyosin 1 (alpha)	197	5e-51	O
		TPM1	tropomyosin 1 (alpha)	197	5e-51	O
		TPM1	tropomyosin 1 (alpha)	197	5e-51	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		LOC535277	similar to tropomyosin 4	219	1e-57	O
		LOC535277	similar to tropomyosin 4	199	2e-51	O
		TPM1	tropomyosin 1 (alpha)	195	2e-50	O
		TPM2	tropomyosin 2	193	8e-50	O
		TPM3	tropomyosin 3	191	2e-49	O
		LOC535277	similar to tropomyosin 4	139	2e-33	O
		LOC540799	similar to tropomyosin 3 isoform 2	84.7	4e-17	O
		LOC512435	similar to tropomyosin 3 isoform 2	83.6	9e-17	O
		LOC512435	similar to tropomyosin 3 isoform 2	83.6	9e-17	O
		LOC512435	similar to tropomyosin 3 isoform 2	83.6	9e-17	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		TPM4	tropomyosin 4	92.4	7e-21	O
		TPM3	tropomyosin 3	85.1	1e-18	O